BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487518
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06980.4 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1360 0.0
> AT5G06980.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to karrikin; LOCATED
IN: cellular_component unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G12320.1).
| chr5:2167468-2169348 FORWARD LENGTH=1323
Length=1323
Score = 1360 bits (736), Expect = 0.0
Identities = 823/863 (95%), Gaps = 13/863 (2%)
Strand=Plus/Plus
Query 1 AGCCACTAACTAAAGTTCAAACTCACGCGctctccacttcctctctccaacttgcttctt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 70 AGCCACTAACTAAAGTTCAAACTCACGCGCTCTCCACTTCCTCTCTTCAACTTGCTTCTT 129
Query 61 tgtcttctctctctctcctccttcGCACTCACAAATCTAC---AGA-AGAAGAAGATAGA 116
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 130 TGTCTTCTCTCTCTTTCCTCCTTCGCACTCACAAATCTACAGAAGATAGAAGAAGATAGA 189
Query 117 CTCATAATCTTTTGGATTTGGATTTAGATCTGATCTTAAAGGTTAAAGTATCATTCATGG 176
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 190 CTCATAATCTTTTGGATTTGGATTTAGATCTGATCATAAAGGTTAAAGTATCATTCATGG 249
Query 177 ATCGTTATTCGAGGAGGAATTTAGAGGATCTTGTTGTGCCCAACTATCAAGAGACATCAG 236
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 250 ATCGTTATTCGAGGAGGAATTTAGAGGATCTTGTTGTGCCTAACTATCAAGAGACATCAG 309
Query 237 ATTCATACCCTTCTCCTGATATGTGGGGTACTGGATGGAGCATGAACTCTTCAGAAGCTG 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ATTCGTACCCTTCTCCTGATATGTGGGGTACTGGATGGAGCATGAACTCTTCAGAAGCTG 369
Query 297 CTGAGAAATGTTTTGATTATGATGTCATTCACAATGGTTTCAGTGGAGGATTATACAGTC 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 370 CTGAGAAATGTTTTGATTATGATGTGATTCACAATGGTTTCAGTGGAGGATTATACAGTC 429
Query 357 AGATGCAGATGGAGATGGGAACTAGTGAACAAGTAGAAGAAGAAACTAAGAGGTTAAAGG 416
||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 430 AGATGGAGATGGATATGGGAACTAGTGAACAAGTAGAAGAAGAAACTAAGAAGTTAAAGG 489
Query 417 CTAGTGGTTGTTTTGACCGTTCGCTTCATGACTTTGATGAAATCCAACAGATGGATGACA 476
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 490 CTAGTGGTTGTTTTGACCGTTCGCTTCATGATTTTGATGAAATCCAACACATGGATGACA 549
Query 477 TGTTCTTAAGTTCCATTTTGGAGGATGTTCCAGGGAATGAGAATTTTCTTTCTTTCAAGG 536
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGTTCTT---TTCCATTTTGGAGGATGTTCCAGGGAATGAGAATTTTCTTTCTTTCAAGG 606
Query 537 AGTCGGATACTAACAACAGCTCCGGTTCTTCCTCTGCGTATCTCGACACTACCGATGGCA 596
||||||||| ||||||||||||| |||| | || | ||||||||||| || |||||||
Sbjct 607 AGTCGGATAATAACAACAGCTCCAGTTC--C-TC--C-TATCTCGACACAACTGATGGCA 660
Query 597 GGGAAGTCCCTATGTTCCATTACAACTGGGAAACTTGTCAAGACATGCCACTTATGGAGG 656
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 661 GGGAAGTCCCTTTGTTCCATTACAACTGGGAAACTTGTCAAGATATGCCACTTATGGAGG 720
Query 657 AGGACGCACCTATGAATCTGTGTGAGGAGAACATGGAGGAGGCATCTGCTGAAGAAGTGG 716
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 721 AGGATGCACCTATGAATCTGTGTGAGGAGAACAAGGAGGAGGCATCTGCTGAAGAAGTTG 780
Query 717 TGTTGCAGGATTTACAAAGGGCTACAGAAATGTTGACTGATGATGCCCGCAAATGCTTCC 776
||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 781 TGTTGCAGGATCTACAAAGGGCTACAGAAATGTTGACTGATGATACCCGCAAGTGCTTCC 840
Query 777 GCGATACCTTTTACCGACTCGCAAAGAACTCACAACAGAAGTCAGACTCCAACCCGGACG 836
|||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |
Sbjct 841 GCGATACCTTTTACCGGCTTGCAAAGAACTCACAACAGAAGTCAGACTCCAACTCGGATG 900
Query 837 AGTTCCTTGAGGATAGAACCAGT 859
|||||||||||||||||||||||
Sbjct 901 AGTTCCTTGAGGATAGAACCAGT 923
Score = 344 bits (186), Expect = 1e-93
Identities = 307/359 (86%), Gaps = 34/359 (9%)
Strand=Plus/Plus
Query 856 CAGTAGGGAAAGTGAACTGGAAACC-AACTCCATCGACAGAGCTGTCGCCAATCTCACAT 914
||||||||||| |||| | |||||| ||||| ||||||||||| || |||||||||||||
Sbjct 958 CAGTAGGGAAACTGAATTTGAAACCAAACTCAATCGACAGAGCCGTGGCCAATCTCACAT 1017
Query 915 TCAACAAGATGGAATCCAACATGAGAAATATGCCTCCACCAAAGAGACTTTCTTCTGTTC 974
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1018 TCAACAAGATGGAATCCAACATGAGAAATATGCCTCCACCGAAGAGACTTTCTTCTGTTC 1077
Query 975 AAGGATAAT-G--T---AT-ATATT----A-TAC-ATATGTGC-------------GTGT 1008
|||||||| | | || ||||| | ||| ||||||| ||||
Sbjct 1078 AAGGATAAGAGAGTTTCATCATATTTGGTAATACCATATGTGTATATAATATATATGTGT 1137
Query 1009 GT----ATCTGTGCTTGGCTTGACTTTT-CCAAGCTTCAGTTTTGATCTGTTTCGTTAGA 1063
|| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1138 GTGTGTATGTGTGCTTGGCTTGACTTTTTCCAAGCTTCAGTTTTGATCTGTTTCATTAGA 1197
Query 1064 GTCTGACTCTCGCTTCTGGATTTCCAATTTCTTATGCTATATGTTATTTACTGAGGGAAA 1123
||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1198 CTCTGACTCT-GCTTCTGGATTTCCAATTTCTTATGCTATATGTTATTTACCGAGTGAA- 1255
Query 1124 CCTATGAAAGTACATTACCCCATGTAGAATCTGTTGTTACAATGTATCAAAAGAGATAT 1182
||| |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1256 CCTGTGAATGTACATTACCCCATGTAGAATCTGTTGTTTCAATGTATCAAAAAAGATAT 1314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5