BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487522 Length=967 Score E Sequences producing significant alignments: (Bits) Value AT5G07020.1 | Symbols: | proline-rich family protein | chr5:21... 1336 0.0 > AT5G07020.1 | Symbols: | proline-rich family protein | chr5:2180502-2182418 REVERSE LENGTH=1009 Length=1009 Score = 1336 bits (723), Expect = 0.0 Identities = 883/959 (92%), Gaps = 15/959 (2%) Strand=Plus/Plus Query 1 GTTACACGCGTAGGCTAGTGAAAAAGCCCACCACACACATCTTCTTC-CGACTTCCTC-C 58 |||||||||||||||||||| |||||||||||||||| | | | | | || || || Sbjct 1 GTTACACGCGTAGGCTAGTGGAAAAGCCCACCACACATAAC-AC-ACAC-ACATCTTCTT 57 Query 59 CCTCT-TTTATCTTCTTCGCCT-TGTCTGT-TCTAAGAAGATAGAACAAACCCAAGAATC 115 ||||| |||||||||||| || ||| | | |||||||||||||||||| ||||||| || Sbjct 58 CCTCTCTTTATCTTCTTCTTCTCTGT-T-TCTCTAAGAAGATAGAACAATCCCAAGATTC 115 Query 116 TCGTCGAATCTGATAAACCATGTCGAACGTCTTGCTATCCCCAAACGGCTGCGTTTTTGC 175 || || || |||| |||||||||||| |||||||||||||||||||||| ||| ||||| Sbjct 116 TCCTCTTATTTGATCAACCATGTCGAATGTCTTGCTATCCCCAAACGGCTACGTATTTGC 175 Query 176 ATCGCCCAAACCTCTTGGCAGATTCCTGAATTCAAAGTCCGGCGGACGGAAACTTGTCGT 235 |||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || | Sbjct 176 ATCGCCTAAACCTCTTGGCAGATTCATCAATTCAAAGTCCGGCGGACGGAAACTTTTCTT 235 Query 236 CTCCGTCGTCAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 CTCCGTCGTTAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295 Query 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTGGCTGGAGAGAAGACGAAAGTGGTGGG 355 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTAGCTGGAGAGAAGACGAAAGTGGTGGG 355 Query 356 AACGTTTCCTCCTCGGAGGCCGCGTGGCTGGACTGGCTATGTTGAGAAAGATACTGCCGG 415 ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 356 AACATTTCCTCCTCGGAAGCCGCGTGGTTGGACTGGCTATGTTGAGAAAGATACTGCTGG 415 Query 416 TCAGACTAATGTTTACTCTATTGAGCCTGCAGTATATGTTGCAGAGAGCGCAATCAGCTC 475 |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 416 TCAGACTAATGTTTACTCCATTGAGCCTGCAGTATATGTTGCAGAGAGCGCGATTAGCTC 475 Query 476 AGGTACTGCAGGATCATCTTCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 476 AGGTACTGCAGGATCATCGGCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535 Query 536 TGCCCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTTGGGAAAGATGCACC 595 ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 536 TGCTCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTCGGGAAAGATGCCCC 595 Query 596 GACTCGACCAAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AACTCGACCCAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655 Query 656 CAAGCCTTCAGAAATTGTTCAAGCTTCTACCCCCTCCATCACAGAAGCTCCGCCGATGGC 715 ||||||||| |||||||||||| |||||||||||||| |||||||||| || ||| |||| Sbjct 656 CAAGCCTTCTGAAATTGTTCAACCTTCTACCCCCTCCGTCACAGAAGCCCCACCGGTGGC 715 Query 716 CGAGCAAGAAACCTCAGTCCCAGAAACTCCACCGGTGGCTCAGCAAGAAACCTCACTGCC 775 ||||| |||||| ||| | |||||||||||| |||||||||||||||||||||||||||| Sbjct 716 CGAGCTAGAAACTTCACTGCCAGAAACTCCATCGGTGGCTCAGCAAGAAACCTCACTGCC 775 Query 776 GGAAACTATGGCCAGTGAGGCTCAGCCAGAGGCGTCCTCTGTTCCAACAACAAGTAGTAC 835 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 776 GGAAACTATGGCTAGTGAGGCTCAGCCAGAGGCGTCTTCTGTTCCAACAACAAGTAGTAC 835 Query 836 CTCTTAGGAGG-TTAGCCTAGGATTATATCTT-GTGTAAAGATGAGATGAAGCATAGACC 893 |||||||| || |||||||||||||||||||| ||||||| ||||||||||||||| ||| Sbjct 836 CTCTTAGG-GGCTTAGCCTAGGATTATATCTTTGTGTAAAAATGAGATGAAGCATATACC 894 Query 894 A-GTATTATGCATTCTGTTAATATTCGGATATATCTACCTATATGTATACACTCTATCA 951 | | ||||||||||||||||||||||||||||| ||| | |||||||||||||| ||| Sbjct 895 AAG-ATTATGCATTCTGTTAATATTCGGATATACCTATATGTATGTATACACTCTGTCA 952 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47320566474 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5