BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487579 Length=963 Score E Sequences producing significant alignments: (Bits) Value AT5G07460.1 | Symbols: PMSR2, ATMSRA2 | peptidemethionine sulfo... 1303 0.0 AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfo... 318 5e-86 > AT5G07460.1 | Symbols: PMSR2, ATMSRA2 | peptidemethionine sulfoxide reductase 2 | chr5:2360634-2362013 REVERSE LENGTH=995 Length=995 Score = 1303 bits (705), Expect = 0.0 Identities = 891/975 (91%), Gaps = 36/975 (4%) Strand=Plus/Plus Query 1 TTAGCGTTGATTTTTAGGTGTTAATCTCTGACACGGACTAGCTTCTTTCTATATATAAAC 60 |||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 35 TTAGCGATGATTTTTAGGTGTTAATCTCT------GACTAGCTTCTTTATATATATAAAC 88 Query 61 GATCTTCACGAGGTTTTATCATCAACAATACACTTAAGACTTAACAATGGATTCTTCTCT 120 || |||| ||||| | |||||| ||| ||| | | |||||||||||||||||||||| Sbjct 89 GAGCTTCCCGAGG---TCTCATCATCAA-ACA-AT-ACACTTAACAATGGATTCTTCTCT 142 Query 121 GAAAACTCAGGAGCCTCAAGTAGTAGATACACCTGAAACTACTCCTTCTCCAATAGCTCA 180 |||||||||||| ||||||||||| | |||||| |||||||||| ||||||| Sbjct 143 GAAAACTCAGGAACCTCAAGTAGT-G--------GAAACTTCTCCTTCTCCGGTAGCTCA 193 Query 181 GGAGCCTCCTCAAGTGGCTGTCAAACCTGCGGTTGTTCCTTCTCCGATAGCTCAAGAGCC 240 ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| Sbjct 194 GGAGCCTCCTCAAGTAGCTGACAAACCTGCGATTGTTCCTTCTCCGATAGCTCAAGAGCC 253 Query 241 AGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGATGTTTCTG 300 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 254 AGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGTTGTTTCTG 313 Query 301 GGGAGTTGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAAGTCGGTTACAC 360 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 314 GGGAGTGGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAGGTCGGTTACAC 373 Query 361 TCAGGGGATCTCTCACAATCCATCTTATGAAGATGTCTGTACGAACACCACGAACCATGC 420 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 374 TCATGGGATCTCTCACAATCCGTCTTATGAAGATGTCTGTACGAACACCACGAACCATGC 433 Query 421 AGAAGTTGTTAGGGTTCAGTTTGATCCTAAAGAGTGCACTTATGAGACGCTTCTTGATCT 480 ||||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||| | Sbjct 434 AGAAGTTGTCAGGGTTCAATATGATCCTAAAGAATGCACTTATGAGACACTTCTTGATTT 493 Query 481 GTTTTGGTCTAGGCATGATCCTACCACCTTGAATCGTCAGGGAAAACTTTTGGGAGCACA 540 |||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 494 GTTTTGGTCTAGACATAATCCTACCACCTTGAATCGTCAGGGAGAACTTTTGGGAGCACA 553 Query 541 ATACCGATCAGGTATATACTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCT 600 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 554 ATACCGATCAGGTATATATTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCT 613 Query 601 AGAGAAAGAGCAGATAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAA 660 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 614 AGAGAAAGAGCAGAAAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAA 673 Query 661 ATTCTACAAAGCTGAAGAATACCATCAGCAATACCTCGTCAAAGGCGGGATGCATGGCAA 720 |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 674 ATTCTACAAAGCTGAAGAATACCATCAGCAGTACCTTGTCAAAGGTGGGATGCATGGAAA 733 Query 721 CGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTACGGCTAATCAAAAAT 780 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 734 CGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTATGGCTAATCAAAAGC 793 Query 781 CATTTGTTGCTCTTCTCCCAAAACAGAGGACTCTCTCAGAGGACCTCTTTACCTGTTTG- 839 | |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| | Sbjct 794 C-TTTGTTCCTCTTCTCCCAAAACAGAGGATTCTCCCAGAGGACCTCTTTACCTGTT-GC 851 Query 840 TGTGTTGGTTTATGTGTGTG--T-TA---ATATGTACTTGTCAGCTCAT-A--CATAATA 890 | ||||||||| |||||||| | | |||||||||||||| ||||| | ||||||| Sbjct 852 TTTGTTGGTTTGTGTGTGTGCGTGTGTTTATATGTACTTGTCATCTCATCATACATAATA 911 Query 891 AAAGATGTGGGATCATCTCACCTTTGT-AAACTTCTCTTAGTTAGTC-AAATTCAACTAA 948 ||||||||||||||||||||||||||| ||| |||| || |||| || |||||||||||| Sbjct 912 AAAGATGTGGGATCATCTCACCTTTGTGAAA-TTCTTTTCGTTACTCCAAATTCAACTAA 970 Query 949 TAAATATTTGAATAA 963 ||||||||||||||| Sbjct 971 TAAATATTTGAATAA 985 > AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfoxide reductase 1 | chr5:24775035-24776390 FORWARD LENGTH=924 Length=924 Score = 318 bits (172), Expect = 5e-86 Identities = 443/571 (78%), Gaps = 30/571 (5%) Strand=Plus/Plus Query 217 TCCTTCTCCGATAGCTCAAG-AGCCAGACAACGATGTTCCGGCGCCGGGAAACGAGTTTG 275 ||||||||| || || |||| | | ||| |||| | |||||||||||||||| ||||| Sbjct 126 TCCTTCTCCAATCGCACAAGTAATC-GACGACGAAGCTCCGGCGCCGGGAAACCAGTTTA 184 Query 276 CTGAGTTCGCCGCCGGATGTTTCTGGGGAGTTGAGCTT-GCTTTCCAGAGAATCCCTGGC 334 || | |||| |||||| ||||||||| | || || || || | ||||||| | || || Sbjct 185 CTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGA-ATTAGCGTACCAGAGAGTTCCAGGA 243 Query 335 GTGAC-CGTGACTGAAGTCGGTTACACTCAGGGGATCTCTCACAATCCATCTTATGAAGA 393 ||||| | || || || ||||| |||| |||||| ||||| |||| ||||| |||| Sbjct 244 GTGACTC-AAACAGAGGTTGGTTATTCTCAAGGGATCACTCACGATCCTTCTTACAAAGA 302 Query 394 TGTCTGTACGA-ACACCACGAACCATGCAGAAG-TTGTTAGGGTTCAGTTTGATCCTAAA 451 ||| ||| | | |||||||| ||||| | || ||||| | ||||| | |||||| ||| Sbjct 303 TGTTTGTTC-AGGTACCACGAATCATGCCG-AGATTGTTCGTGTTCAATATGATCCAAAA 360 Query 452 GAGTGCACTTATGAGACGCTTCTTGATCTGTTTTGGTCTAGGCATGATCCTACCACCTTG 511 ||||| | ||| || |||| |||||| |||| ||||||| ||||||||| ||||| ||| Sbjct 361 GAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGATCCCACCACTTTG 420 Query 512 AATCGTCAGGGAAAACTTTTGGGAGCACAATACCGATCAGGTATATACTTCTAC-ACACC 570 ||||| |||||||| | ||||| | |||||||| ||||| ||||| |||||| || || Sbjct 421 AATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATATTTCTACAAC-CC 479 Query 571 GGAGCAAGAGAAACTAGCACGCGAGTCTCTAGAGAAAG-AGCAGATAA-AACTGGA--GG 626 ||||||||||||||||||||||||||| || ||| | | ||| || || | || || Sbjct 480 GGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCG-GCACCAGC-AACAAGTTGACAGG 537 Query 627 ATAAGATTGTGACTGAGATCTTACCGGCAAAGAAATTCTACAAAGCTGAAGAATACCATC 686 | | | ||||||| |||||||||||||| |||||||| || | |||||| ||| | || | Sbjct 538 A-AGG-TTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGAACATCACC 595 Query 687 AGCAATACCTCGTC-AAAGGCGGGATGCATGG-C--AACGCTCAATCACCTGCAAAGAG- 741 |||||||| | ||| ||||| |||| | ||| | || || ||||| | | ||| || Sbjct 596 AGCAATACTT-GTCTAAAGGAGGGAGGTTTGGTCTTAA-GC--AATCAACGGAAAA-AGG 650 Query 742 CTGCAAGGACCCTATCCGCTGCTACGGCTAA 772 |||||| ||||| |||||||||||||| ||| Sbjct 651 CTGCAACGACCCAATCCGCTGCTACGGGTAA 681 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119629886 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5