BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487604 Length=1417 Score E Sequences producing significant alignments: (Bits) Value AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protei... 1857 0.0 AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 | ch... 427 1e-118 > AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protein 29 | chr5:2446764-2448543 FORWARD LENGTH=1595 Length=1595 Score = 1857 bits (1005), Expect = 0.0 Identities = 1147/1214 (94%), Gaps = 16/1214 (1%) Strand=Plus/Plus Query 211 ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGGCTGAAGAAAGGAGCATGGATC-GCCGA 269 |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| Sbjct 327 ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGACTGAAGAAAGGAGCATGGA-CTGCCGA 385 Query 270 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 445 Query 330 CCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 389 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 TCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 505 Query 390 TTTGAAACCTGATATCAAGAGAGGAGGGTTTAGTTACGAGGAGGAACAGATTATCATCAT 449 |||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||| Sbjct 506 TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCTATGAGGAGGAACAGATTATCATCAT 565 Query 450 GCTTCACGCCTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAAC 509 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 GCTACACGCTTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAAC 625 Query 510 AGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCGCCTGATCGATAAGGG 569 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 626 AGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCTCCTGATCGATAAGGG 685 Query 570 AATCGATCCCGTGGCCCACAAGCCACTTGCCTATGATTCAAACCCGGAAGAGCAATCGCA 629 ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 686 AATCGATCCCGTGACCCACAAGCCACTTGCCTATGACTCAAACCCGGATGAGCAATCGCA 745 Query 630 ATCGGCGGGTTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGTTCCTACAATGTACAGGA 689 ||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||| ||| Sbjct 746 ATCGG-G--TTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGCTCCAAAAATGTACCGGA 802 Query 690 GATAAGCAGCAGTGATGAGACAGCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTG 749 ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 803 GATAACCAGCAGTGACGAGACACCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTG 862 Query 750 TTTTATGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTGGCAGCTAGGGCTGCTTC 809 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 863 TTTTAAGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTTGCAGCTAGGGCTTCTTC 922 Query 810 CATAGGAAATAT-CTTAG-CAGCCTCCATCCAAGGAACCTTGATCAGCTCTACACCGTTG 867 ||| |||| ||| || || | ||||||||| ||||||||||||||||||||||||||||| Sbjct 923 CATGGGAACTATACT-AGGC-GCCTCCATCGAAGGAACCTTGATCAGCTCTACACCGTTG 980 Query 868 TCTTCATGTCTCAATGATGACTTTTCCGAAACAAGTCAATTTCAGATGGAAGAATTTGAT 927 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 981 TCTTCATGTCTAAATGATGACTTTTCTGAAACAAGTCAATTTCAGATGGAAGAATTTGAT 1040 Query 928 CAATTCTGTCAGTCATCTGAACACATAATTGATCATATGAAAGAAGACATCAGCATCAAC 987 | ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1041 CCATTCTATCAGTCATCTGAACACATAATTGATCATATGAAAGAAGATATCAGCATCAAC 1100 Query 988 AATTCCGAATATGATTTCTCGCAGTTTCTTGAGCAGTTTAGTAAAAATGAAGGCGAAGAA 1047 ||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct 1101 AATTCCGAATACGATTTCTCGCAGTTTCTCGAGCAGTTTAGTAACAACGAAGGGGAAGAA 1160 Query 1048 GCTGACAATATTGGGGGAGGATATAACCAAGATCTGCTTATGTCTGATGTCTCATCAACA 1107 |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1161 GCTGACAATACTGGAGGAGGATATAACCAAGATCTTCTTATGTCTGATGTCTCATCAACA 1220 Query 1108 AGCGTTGATGAAGACGATATGATG-AAGAACATAACCAGTTGGTCACATTATCTCCTTGA 1166 ||||||||||||||||| |||||| || |||||||| |||||||| ||||||||||||| Sbjct 1221 AGCGTTGATGAAGACGAGATGATGCAA-AACATAACTGGTTGGTCAAATTATCTCCTTGA 1279 Query 1167 CCATTCCGATTTTAATTATGACACGAACCAAGATTACGACGACAAGAACTTCATATGATC 1226 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1280 CCATTCCGATTTCAATTATGACACGAGCCAAGATTACGACGACAAGAACTTCATATGATC 1339 Query 1227 CGTTGATTGGTTACCGGACTAGAGTTGACCGGTTCATGTCAT--GGTTCTCTTAGATATT 1284 ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1340 CGTTGATTGCTTACCGGACTAGAGTTGACCGGTTAATGTCATATGGTTCTCTTAGATATT 1399 Query 1285 TGTCAAGTTATAGTAAAGGTCCATTATAGGGTCACTATATATTAATATTCAATAATGGAT 1344 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 1400 TGTCAAGTTATAGTAAAGGTCCACTATAGGGTCACTATATATTAATATTCAGTAATGGAT 1459 Query 1345 TCTCTTAGTTAGAGA-CCTTATGGGATGCCATGGATCAATTAGTATTTGATTCGCGGGAG 1403 ||||||||||||||| |||| || ||||| ||||||||||||||||||||| ||||||| Sbjct 1460 TCTCTTAGTTAGAGAACCTTGTG--ATGCCGTGGATCAATTAGTATTTGATTTGCGGGAG 1517 Query 1404 ACACGAGttttttt 1417 |||||||||||||| Sbjct 1518 ACACGAGTTTTTTT 1531 Score = 161 bits (87), Expect = 1e-38 Identities = 114/126 (90%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 65 TTAATATGAAAACACACAATCAATATTCAAC-G--GTCTACCACAGTTTCTCAGTCAGTT 121 |||||||||||||||| |||| || |||| | ||||||||||||||||||||||||| Sbjct 109 TTAATATGAAAACACAAAATC-CTA--CAACGGTCGTCTACCACAGTTTCTCAGTCAGTT 165 Query 122 TCATATTCAGATGCATCAGAGTTCTTATCAACAGATCTATCAGTCTCTTGCCTTAAATTC 181 ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| || Sbjct 166 TCATATTCAGATGCATCAGAGTTCTCATCAAGAGATCTATCAGTCTATTGCCTTAAACTC 225 Query 182 GACGAC 187 |||||| Sbjct 226 GACGAC 231 > AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 | chr5:24689151-24690797 REVERSE LENGTH=1427 Length=1427 Score = 427 bits (231), Expect = 1e-118 Identities = 339/391 (87%), Gaps = 8/391 (2%) Strand=Plus/Plus Query 210 AATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGGC-TGAAGAAAGGAGCATGGATCGCCG 268 ||||||||||||||||||||| || |||||| ||| |||||||||||||||||| | ||| Sbjct 2 AATGTCAAGAAAGCCATGTTGCGTCGGAGAA-GGCTTGAAGAAAGGAGCATGGACCACCG 60 Query 269 AAGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACA 328 | || ||||||||||||||||||||||| || || ||||| || ||||||||||| |||| Sbjct 61 AGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACA 120 Query 329 TCCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACT 388 | |||||||||||||| | ||||| |||||||||||||||||| |||||||| | |||| Sbjct 121 TTCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACT 180 Query 389 A-TTTGAAACCTGATATCAAGAGAGGAGGGTTTAGTTAC-GAGGAGGAACAGATTATCAT 446 | || |||||||| ||||| ||||| | |||||||| | ||||| || ||||||||||| Sbjct 181 ACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTT-CAGAGGAAGAGCAGATTATCAT 238 Query 447 CATGCTTCACGCCTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAG 506 ||||||||| || ||||| |||||||||||||| ||||||||||||||||| || | ||| Sbjct 239 CATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAG 298 Query 507 AACAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCGCCTGATCGATA- 565 |||||| |||||||| ||||||||||||||||||||||||||||| || |||| || | Sbjct 299 AACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGA-AC 357 Query 566 AGGGAATCGATCCCGTGGCCCACAAGCCACT 596 |||| || ||||||||| | ||||||||||| Sbjct 358 AGGGTATTGATCCCGTGACTCACAAGCCACT 388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69828958095 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5