BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487634
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2584 0.0
AT5G61040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 154 3e-36
> AT5G08010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G61040.1);
Has 5732 Blast hits to 4319 proteins in 440 species: Archae
- 66; Bacteria - 397; Metazoa - 2437; Fungi - 292; Plants
- 238; Viruses - 35; Other Eukaryotes - 2267 (source: NCBI BLink).
| chr5:2569606-2571734 FORWARD LENGTH=1822
Length=1822
Score = 2584 bits (1399), Expect = 0.0
Identities = 1691/1826 (93%), Gaps = 44/1826 (2%)
Strand=Plus/Plus
Query 1 ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGATCTATGGTTAATCGCAGCTACTGCTGCTACAGGATATATAACCAAGCATTTGCGA 60
Query 61 AATGTATCAAAAGGTAAACCTTCTTCTGAAGATTTGACTAATGTGAAGCTTGAGTCCCCG 120
|||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 AATGTATCCAAAGGTAAATCTTCTTCTGAAGATTTGACTAATGTGAAGCTAGAGTCACCG 120
Query 121 AGATACTTGGCTAGTAATGTAGTAAGAGTCAAGAAACCAAAAGAAGAAAACTTTGAGGAT 180
|||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 AGATGCTTGGCTAGTAATGTAGTAAGAGTTAAAAAACCAAAAGAAGAAAACTTTGAGGAT 180
Query 181 TGCTTTAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATAAAGTGGAAGTA 240
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TGCTTAAATGGGGAAACTCTTGATCTATATGAATGTGGCAATGCATATGGAGTGGAAGTA 240
Query 241 GATTCGAGTAATGAGGAGAATTTGGGATATAATGATGAGATTCGTTCAGGTTCTTTTGGG 300
| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GCTTCGAATAATGAGGAGGATTTGGGATATGATGATGAGATTCGTTCAGGTTCTTTTGGG 300
Query 301 AACAGAGCGTTTCTTAGGAGGAATCAGCGTCTTATCAAGCCTTTTTCTTTGGAGAAAAGC 360
|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||
Sbjct 301 AACAGAGCGTTTCTTAGGAGAAATCAGTGTCCTATCAAGCCTTTTTCTTTGGAGAAAAGC 360
Query 361 GTAATGTCTCGGTTACATAGAGAGAAAGTGTCCATGGAGGAATATATGCGTAGTCTGTTT 420
| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 361 ATTATGTCTCGGTTACATAGAGAGAAAATATCCATGGAGGAATATATGCGTAGTCCGTTT 420
Query 421 CCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAAAGTAATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CCATCACCTTGTGGTTCAGTTTCGAGGCCCTTGCTTGTTACTGATGGTACAAATGTAATT 480
Query 481 AGCAAGAAAACTGGAGATTCTGTTAGCCAGCAAGTTCCGGAATGCGGGATTCCTCAGCTT 540
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 AGCAAGAATACTGGAGATTCTGTTAGCCAGCAAGTTTCGGAATGCGGGATTCCTCAGCTT 540
Query 541 AGGAAGTTGGAATCCTCACTTCTCTACGCTAAGAGGGGAGTTGGAAATGCTAAGACCGCA 600
||||||||| |||| |||||||| |||||||| |||||||||||| |||| |||| ||
Sbjct 541 AGGAAGTTGAAATCTTCACTTCTTTACGCTAAAAGGGGAGTTGGAGATGCGAAGAGCGTG 600
Query 601 AGTAGAGGATCTGATAATGGGATTGGATCAAATGATGCAGTGTT-GCTGCTTTGCGTTGG 659
|||||| ||||||||||||||| ||||||||||||| ||||||| | |||| ||||||||
Sbjct 601 AGTAGAAGATCTGATAATGGGACTGGATCAAATGATCCAGTGTTAG-TGCTATGCGTTGG 659
Query 660 GATTTCAATTGGGATAATGTCATCATTTGTAGCAAACCAAACCGAACTAAACAAAGTCAG 719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GATTTCAATTGGGATAATGTCATCATTTGTAGCTAACCAAACCGAACTAAACAAAGTCAG 719
Query 720 AGCAGAGTCAAAGCAGACAGAGAATTTGGTAAAAGAGTTTGAAGATGAGCTCAAGAGAAA 779
||||||||||||||||||||||||||||| ||||||||| |||||||| | |
Sbjct 720 AGCAGAGTCAAAGCAGACAGAGAATTTGGGAAAAGAGTTAGAAGATGA---C------AT 770
Query 780 AGACTCATTGACAGTGAAAGATGATTTACACAATGGTGAAAAGAGAGTAGAGAATTCAGA 839
| || | || ||| || | | ||| || |||||||| || ||||||||||||
Sbjct 771 ACAC-GA-TG---GTG-AA-A--A---ACAGTGTGATGAAAAGACAGCAGAGAATTCAGA 818
Query 840 ATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 ATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGAACTTGAAAGGCTGGAGATCAACAT 878
Query 900 GACTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGAGTTT-G 958
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 879 GATTTCCTCCAACATTGAGACAAAACTCTCAGATGTCTTTGAGCTGGAGCCAGA-TTTCG 937
Query 959 AAGTAGAATTTGCGCAGGGCGAGCTGATAGATGATCAGGTTGAAAGGCAGCGTTTTGATG 1018
||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 938 AAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATCAGGTTGAAAGACAGCGTTTTGATG 997
Query 1019 AAACCGAGTCCAACCAGGAATGGAGTAGCAATTCCACACCTGAATCAGGAAACTATATAG 1078
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 998 AAACCGTGTCCAACCAGGAACGGAGTAGCAATTCCACACCTGAATCAGGAAACTACATAG 1057
Query 1079 TCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCACGTTATGAAAAAC 1138
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1058 TCTCACCTCGTGAGTTAAGCTTGCGTCTGCTTGGAGTTATCAATTCATGCTATGAAAAAC 1117
Query 1139 GTATAAAAGAACTTGACAAAGCCTTACAAGAGAGTCAGATGAAAGTGGAGCAGCTGGTCA 1198
| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1118 GGATAAAAGAACTTGAGAATGCCTTACAAGAGAGTCAGAGGAAAGTGGAGCAGCTGGTCA 1177
Query 1199 TAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCAATGAAGTGATGA 1258
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1178 TAGAATCAGAGGAAAAGAAGAAACCATTGTCAAGGATTTGGGAAACCCATGAAGAGATGA 1237
Query 1259 AATACAAGAGAGACTCAAATCTTCCAGTTTCTGTAGCTCATACCGAGAAGAATCATAATC 1318
|||| ||||| | |||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1238 AATATAAGAGGGGCTCAAATCCTCCAGTTTCTGTAGCTCATATAGAGAAGAAACATAA-- 1295
Query 1319 CTCCTGCAGAGATCCAGCCTCTGGTTATGAATTTAGAAGGGGAAGCACTTGATGCATTCA 1378
||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1296 -TCCTGCAGAGATCCAACCTCTGGTTATGACTTTAGAAGGGGAAGCACTTGACGCATTCA 1354
Query 1379 ATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGATTATTTACAAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1355 ATGAATCTTACGAGGAACTGATGGATATTAACGACTATTCAGAAGAAGACGATTTACAAT 1414
Query 1439 GTGAGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTT 1498
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GTGTGATGCAGGAGAATGAGCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTT 1474
Query 1499 GGAGCCATAAAGATTACATAAAGGATTCTTCAAGAAGTTCAGAGGATGTGAATTTCTCCA 1558
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1475 GGAGCCATAAAGATTACATAAAGGATTCTTCAAGAACTTCAGAGGATGTGAATTTGTCCA 1534
Query 1559 TGCTGCAAGATCTACTTGGTCTGAGTGACGAAGAAGAAGA---------TGAGATGGAGA 1609
||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1535 TGCTGCAAGATCTACTTGGTCTGAGCGACGAAGAAGAAGAAGAAGAAGATGAGATGGAGA 1594
Query 1610 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGATCGTCTGCTGTGTTAAATG 1669
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1595 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATG 1654
Query 1670 CCCAGAAGATGCTATTTCTCATGGAAGAAACAGAACAAAATCTATaaaaaaaGCATTTAC 1729
||||||| |||||||| ||||||||||||| | ||| ||||||||||||| ||||||||
Sbjct 1655 CCCAGAAAATGCTATTCCTCATGGAAGAAATACAACCAAATCTATAAAAA--GCATTTAC 1712
Query 1730 TCAAATTCTTATCATTTAT-GATGAAAGTATTACACGTCTCTAGTTAGTGTTTGTGTGTG 1788
||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1713 TCAAATTCTCATCATTTTTTGATGAAAGTATTACACGTCTCTAGTTAGTGT--GTGTGT- 1769
Query 1789 TAGATATGCAAAGATTGGTGTAACTT 1814
|||||||||||||||||||||||||
Sbjct 1770 -AGATATGCAAAGATTGGTGTAACTT 1794
> AT5G61040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08010.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:24562333-24564959 REVERSE LENGTH=2435
Length=2435
Score = 154 bits (83), Expect = 3e-36
Identities = 108/120 (90%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 1598 ATGAGATGGAGAAGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGATCGTC-T 1656
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || || |
Sbjct 2219 ATGAAATGGAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTC-TCCT 2277
Query 1657 GCTGTGTTAAATGCCCAGAAGATGCTATTTCTCATGGAAGAAACAGAACAAAATCTATaa 1716
| |||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 2278 GTTGTGTTGAATGCACAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAA 2337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89758574460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5