BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487637
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08050.1 | Symbols: | Protein of unknown function (DUF1118)... 1074 0.0
> AT5G08050.1 | Symbols: | Protein of unknown function (DUF1118)
| chr5:2578345-2579163 FORWARD LENGTH=749
Length=749
Score = 1074 bits (581), Expect = 0.0
Identities = 688/737 (93%), Gaps = 18/737 (2%)
Strand=Plus/Plus
Query 1 GATCTACAAGCGCTTGGTTCCTCCATTGAAGAAAAAGCTTTGACAAAA-C---------- 49
||||||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 1 GATCTACAAGCTCTTGGTTTCTCCATTGAAGAAAAAGCTTTGACAAAACCAGGGAAAGAG 60
Query 50 -C--AGAGAGATAATGGCGGCTAAACTAATCTGTTCGTCTTTAACAGTGCATTCAATGGC 106
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAGAGAGAGATAATGGCGGCTAAACTAATCTGTTCGTCTTTAACAGTGCATTCAATGGC 120
Query 107 GAACAAGAAACCTTCACCTTCTGCTGCAACAAGAACAATAACCTCAAAGAAGAGTACAGC 166
|| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 AAATAAGAAGCCATCACCTTCTGCTGCAACAAGAACAATAACCTCAAAGAAGAGCACAGC 180
Query 167 GACTCCACAGGTGAAACTACTGACAAGAGTTGAGCAGCTTAAGCTTCTGACCAAAGCCGA 226
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 181 GACTCCACAGGTGAAACTGCTGACAAGAGTCGAGCAGCTCAAGCTTCTGACCAAAGCCGA 240
Query 227 GAAAGCAGGACTTTTGTCTTTAGCAGAGAAATCAGGTTTCTCTCTATCAACCATCGAGCG 286
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 GAAAGCAGGACTTTTGTCTTTAGCAGAGAAATCAGGTTTCTCTCTATCGACCATCGAGCG 300
Query 287 TCTTGGATTGCTGACCAAAGCAGAGGAATTCGGCGTTTTGTCTGCCGCAACAAACCCGGA 346
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 301 TCTTGGATTGCTGACCAAAGCAGAGGAGTTCGGCGTTTTGTCTGCCGCCACAAACCCGGA 360
Query 347 AACGCCTGGAACGTTATTCACTTTGAGCCTCGGTTTACTCCTTCTTGGACCGGTTTGTGC 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 AACGCCTGGAACGTTATTCACTTTGAGCCTCGGTTTACTCCTTCTTGGACCGGTTTTTGC 420
Query 407 ATATGTAGTTCCTGAAGATTACACTTGGGAAGTAGTGGTTCAGGTTCTTGTGGCTCTGCT 466
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 421 ATATGTGGTTCCTGAAGATTACACTTGGGAAGTAGTGATTCAGGTTCTTGTGGCTCTACT 480
Query 467 CTCTGTTCTTGGTGGCTCTGCTGCTTTTGCTGCCTCTGGTTTTGTCTCCAATTTGCAGAA 526
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 CTCTGTTCTTGGTGGCTCTGCTGCTTTTGCTGCTTCTGGTTTTGTCTCCAATTTGCAGAA 540
Query 527 ATCTGATTAGCCCGCTCGGtttttttttGTATCACATTTATTTACCCCGAGTAGCAAGAG 586
|||||||||||||| ||| ||||||||||||||| || ||||||||| | ||||||||||
Sbjct 541 ATCTGATTAGCCCGATCGTTTTTTTTTTGTATCAAATATATTTACCCGGTGTAGCAAGAG 600
Query 587 ACTTTTCTGCATTTAAGATTAAAACTTTATGATGTATTTGATCTACATTTGTAGGGTATC 646
||||||||||||||||||| |||||||||| |||||||||||||||||| ||| | |
Sbjct 601 ACTTTTCTGCATTTAAGATGAAAACTTTATAATGTATTTGATCTACATT-GTATCA-ACC 658
Query 647 AACTCATTTTCACTATTT-CTATCTATGTAAATGGTTTCATATACAGAATCCAAGAGAAA 705
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AG-TCATTTTCACTATTTTCTATCTATGTAAATGGTTTCATATACAGAATCCAAGAGAAA 717
Query 706 CGTTTTGAATTTCAATA 722
|||||||||||||||||
Sbjct 718 CGTTTTGAATTTCAATA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5