BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487641
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08080.3 | Symbols: SYP132 | syntaxin of plants 132 | chr5:2... 1434 0.0
> AT5G08080.3 | Symbols: SYP132 | syntaxin of plants 132 | chr5:2588342-2591316
FORWARD LENGTH=1348
Length=1348
Score = 1434 bits (776), Expect = 0.0
Identities = 823/845 (97%), Gaps = 5/845 (1%)
Strand=Plus/Plus
Query 374 GCTTCCCATGAGGAGTCAAAAGCTGTGACCAAAGCTCCTGCCATGAAGGCGATAAAGAAG 433
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 401 GCTTCCCATGAGGAGTCAAAATCTGTGACCAAAGCTCCTGCCATGAAGGCGATAAAGAAG 460
Query 434 ACAATGGAAAAGGATGTTGATGAAGTTGGAAGTATTGCCCGTTTCATAAAGGGGAAACTC 493
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 ACAATGGAAAAAGACGTTGATGAAGTTGGAAGTATTGCCCGTTTCATAAAGGGGAAACTC 520
Query 494 GAGGAGTTGGATAGAGAGAACTTGGCAAATAGACAAAAACCTGGATGTGCAAAAGGATCT 553
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GAGGAGTTGGACAGAGAGAACTTGGCAAATAGACAAAAACCTGGATGTGCAAAAGGATCT 580
Query 554 GGTGTGGATCGATCAAGAACAGCAACGACACTTTCCTTAAAGAAGAAGTTGAAAGACAAG 613
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 581 GGTGTGGATCGATCAAGAACAGCAACAACACTTTCCTTAAAGAAGAAGTTGAAAGACAAG 640
Query 614 ATGGCCGAGTTTCAGGTTCTACGCGAAAACATTCAACAAGAGTATCGCGATGTTGTTGAT 673
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 641 ATGGCCGAGTTTCAGGTTCTACGAGAGAACATTCAACAAGAGTATCGCGATGTTGTTGAT 700
Query 674 AGGCGCA-TTTATACTGTAACTGGGGAGCGGGCGGATGAAGATACTATTGATGAATTGAT 732
||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AGGCG-AGTTTATACAGTAACTGGGGAGCGGGCGGATGAAGATACTATTGATGAATTGAT 759
Query 733 TGAAACTGGAAACAGTGAACAGATCTTCCGGAAAGCGATTCAGGAGCAAGGAAGAGGACA 792
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 760 TGAAACTGGAAACAGCGAACAGATCTTCCAGAAAGCGATTCAGGAGCAAGGAAGAGGACA 819
Query 793 GGTAATGGACACCTTGGCGGAAATCCAAGAACGTCATGATGCTGTCAGAGACTTGGAAAA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GGTAATGGACACCTTGGCGGAAATCCAAGAACGTCATGATGCTGTCAGAGACTTGGAAAA 879
Query 853 GAAACTTCTTGACTTGCAACAAATATTCTTGGATATGGCAGTTTTGGTTGATGCACAAGG 912
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAAACTTCTTGACTTACAACAAATATTCTTGGATATGGCAGTTTTGGTTGATGCACAAGG 939
Query 913 AGAAATGCTTGACAATATAGAATCTCAGGTGTCAAGTGCAGTAGATCACGTGCAATCGGG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AGAAATGCTTGACAATATAGAATCTCAGGTGTCAAGTGCAGTAGATCACGTGCAATCGGG 999
Query 973 AAATACGGCTCTTCAAAGAGCAAAGAGCTTGCAGAAGAACTCAAGAAAATGGATGTGTAT 1032
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AAACACGGCACTTCAAAGAGCAAAGAGCTTGCAGAAGAACTCAAGAAAATGGATGTGTAT 1059
Query 1033 TGCAATTATCATCCTCCTCATTGTGGTTGCAGTGATCGTTGTTGGTGTTCTCAAGCCTTG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TGCAATTATCATCCTCCTCATTGTGGTTGCAGTGATCGTTGTTGGTGTTCTCAAGCCTTG 1119
Query 1093 GAAAAACAAGAGTGCTTGAGGAAACAAAGAATGTACaaaaaaaaTATCAAATCCTTATTC 1152
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 1120 GAAAAACAAGAGTGCTTGAGGAAAGAAAGAATGTACAAAAGAA-TATCAAATCCTTATTC 1178
Query 1153 ACGGCTTTGAGTGAGAGTGTTTTGTTCATGATGTGTGttttttttt--ACCAAGAAACGA 1210
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1179 ACGGCTTTGAGTGAGAGTGTTTTGTTTATGATGTGTGTTTTTTTTTTTACCAAGAAACGA 1238
Query 1211 ACAAA 1215
| |||
Sbjct 1239 AAAAA 1243
Score = 520 bits (281), Expect = 2e-146
Identities = 345/374 (92%), Gaps = 12/374 (3%)
Strand=Plus/Plus
Query 1 CTCTCATTCTTTTGCTTGAGCCACAGATCCGTTTCTCCTCCACTTTCTCTCGATTTGTCT 60
|||||||| |||||||||||||||||||||| || | || | ||||||||||||||
Sbjct 5 CTCTCATTATTTTGCTTGAGCCACAGATCCG-TT-T-CT---C---CTCTCGATTTGTCT 55
Query 61 TCTTCACTCAGTTTCTCGCTTGTCCTTTGAAAGATCGACACTTTCCGGCGTCCT-TTGTC 119
||||||||||||||||||||||| || | ||||||||| |||||||||||| || |||||
Sbjct 56 TCTTCACTCAGTTTCTCGCTTGTTCTGTCAAAGATCGAAACTTTCCGGCGT-CTATTGTC 114
Query 120 TTCGCACTATTGAAGTTGTCTTCTTCTTCGTTCTTGGTGTGAACCGAAACTAAACTTTTA 179
|||||||||||| | | ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 115 TTCGCACTATTGCACTCGTCTTCTTCTTCGTTCTTGGTGTGAACCGAAACTAAA-TTCTA 173
Query 180 TCTTTTTGCTCTACACGATGAACGATCTTCTTAAGGGTTCGTTTGAGCTTCCCCGAGGTC 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 174 TCTTTTTGCTCTACACGATGAACGATCTTCTGAAGGGTTCGTTTGAGCTTCCCAGAGGTC 233
Query 240 AATCTTCTAGAGAAGGGGATGTTGAACTAGGGGAACAACAAGGTGGAGATCAAGGATTAG 299
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 234 AATCTTCTAGAGAAGGAGATGTTGAACTAGGGGAACAACAAGGTGGAGATCAAGGATTGG 293
Query 300 AAGATTTCTTCAAAAAGGTTCAAGTCATTGACAAACAGTATGATAAGCTAGATAAGCTTC 359
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 294 AAGATTTTTTCAAAAAGGTTCAAGTGATTGACAAACAGTATGATAAGCTAGACAAGCTTC 353
Query 360 TAAAGAAACTTCAG 373
|||||||||| |||
Sbjct 354 TAAAGAAACTGCAG 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59688448005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5