BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487651

Length=1345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08160.1 | Symbols: ATPK3, PK3 | serine/threonine protein ki...  1906    0.0  


> AT5G08160.1 | Symbols: ATPK3, PK3 | serine/threonine protein 
kinase 3 | chr5:2625559-2628110 REVERSE LENGTH=1556
Length=1556

 Score = 1906 bits (1032),  Expect = 0.0
 Identities = 1126/1171 (96%), Gaps = 8/1171 (1%)
 Strand=Plus/Plus

Query  1     ATCGATTCGTTGGTCAAGAGGAGACTGTGCGTAGTGTGATTCGTGAGCATGGGCTGTTCG  60
             |||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||
Sbjct  124   ATCGATTCGTTGGTCAAGAGGAGATTGTGC---GTGTGATTCGTGAGCATGGGCTGTTCG  180

Query  61    TTTTCGGGATTGAACGCGCTTTACGACGCCGTCAACGGCGGAGGCGACGTCTGGATCAAT  120
             ||||| ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||
Sbjct  181   TTTTCAGGATTGAACGCACTTTACGACGCCGTCAACGGTGGAGGTGACGTATGGATCAAT  240

Query  121   GAGAATCGGTTCAGGATCGTCAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG  180
             |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  241   GAGAATCGATTCAGGATCGTGAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG  300

Query  181   GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301   GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA  360

Query  241   GTCAAGGATCCGGCTCATCTCTCCGCTGATGGAACTTATGCTATGAAGAAAGTTTTGATT  300
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361   GTCAAGGATCCGGCTCATCTCTCCGCTGACGGAACTTATGCTATGAAGAAAGTTTTGATT  420

Query  301   CAGAACAAGGAGCAATTGGAATTGGTGCGGGAGGAGATCCGTGTTTCATCATTGTTCAAT  360
             ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  421   CAGAACAAGGAGCAATTGGAATTGGTGCGTGAGGAGATCCGTGTTTCTTCATTGTTCAAT  480

Query  361   CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG  420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481   CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG  540

Query  421   GGAGCTTGGAAACACGAGGCCTTCTTGCTATTTCCTGTTCACTTGGATGGGACCTTGCTG  480
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  541   GGAGCTTGGAAACACGAGGCCTTCTTGCTGTTTCCTGTTCACTTGGATGGGACCTTGCTG  600

Query  481   GATAATTTCACTTTGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTTTTGCAC  540
             ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  601   GATAATTTCACTTTGATGAAGGCTAAAAAAGAAACTTTCTCAACAACTGATGTTTTGCAC  660

Query  541   ATATTCCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCCACCTTATGCT  600
             |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  661   ATATTCCGTCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCCACCATATGCT  720

Query  601   CACAACGATGTCAAACCTGGAAACGTGCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT  660
             |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  721   CACAACGATGTCAAACCTGGCAACGTCCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT  780

Query  661   GCGATTTTGATGGACTTTGGGAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA  720
             ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  781   GCGATATTGATGGACTTTGGAAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA  840

Query  721   GAGGCCTTACAATTACAGGAATGGACATCTGAGCATTGTTCAGCACCGTTTCGAGCTCCC  780
             ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  841   GAGGCCTTACAGTTACAGGAATGGACATCTGAGCATTGCTCAGCACCGTTTCGAGCTCCC  900

Query  781   GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGACGAGAGAACAGATATCTGGTCACTA  840
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  901   GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGATGAGAGAACAGATATCTGGTCACTA  960

Query  841   GGCTGCACATTATATGCAATAATGTACGGTGTGTCTCCATTCGAGTATGCTCTTGGAGAA  900
             |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  961   GGCTGCACATTATATGCAATAATGTATGGTGTGTCTCCATTCGAGTATGCGCTTGGAGAA  1020

Query  901   TCTGGTGGAAGTCTTCAGCTCGCAATCGTGAACGCTCAGATCAAGTGGCCAAACACTGGA  960
             |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  1021  TCTGGTGGAAGTCTTCAGCTTGCAATCGTGAACGCTCAGATCAAATGGCCAAACACTGGA  1080

Query  961   CCAAAGGCTTCTTATCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAG  1020
             ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1081  CCAAAAGCTTCTTACCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAA  1140

Query  1021  GCTGCGGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAGTTGATCGCTAAA  1080
             ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1141  GCTGCTGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAATTGATCGCTAAA  1200

Query  1081  TTCACCAAATGATTTCCTAATTATGGTGGTTTTCCAAAAA-GGTGAAAGGAG-GAAAAGA  1138
             |||||||||||||| || ||||||| |||||||| ||||| ||||||||||  |||||||
Sbjct  1201  TTCACCAAATGATTCCCGAATTATGTTGGTTTTCAAAAAAAGGTGAAAGGAAAGAAAAGA  1260

Query  1139  AAAAGACTCTTTATACATTGCTTTGTCTCTT  1169
             |   |||||||||||||||||||||||||||
Sbjct  1261  A---GACTCTTTATACATTGCTTTGTCTCTT  1288


 Score =  187 bits (101),  Expect = 2e-46
 Identities = 163/190 (86%), Gaps = 15/190 (8%)
 Strand=Plus/Plus

Query  1161  TTGTCTCTTCGTAATGTATTTTGAACTATTTAGGATTCGGGGTCTTCTTTTTGACTATGG  1220
             ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  1357  TTG-CTCTTCGTAATGTATTTTGAACTTTTTAGGATTCGGGGTTTTCTTTTTGACTATGG  1415

Query  1221  GAAGTTGTGAACCAATAAATTTACTTAAAGGACAATATAAAT--TAGTTGTCTTAATTCT  1278
             |||||||||||||||||||||||||||| | ||| ||||  |  |||||||| |||||||
Sbjct  1416  GAAGTTGTGAACCAATAAATTTACTTAA-G-ACAGTATATCTCGTAGTTGTCCTAATTCT  1473

Query  1279  GGACAAT-ATG-TCGATGATGCGT-TTATAAATTTGTGCTGATTAAAAAATATATTAATT  1335
             || | || ||| | | | |||| | |||||| |||||||||||| | |  | | ||||||
Sbjct  1474  GGTCGATGATGCT-G-TAATGC-TATTATAATTTTGTGCTGATTCATA--T-T-TTAATT  1526

Query  1336  ATAACCATAG  1345
             ||||||||||
Sbjct  1527  ATAACCATAG  1536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 66214518855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5