BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487651 Length=1345 Score E Sequences producing significant alignments: (Bits) Value AT5G08160.1 | Symbols: ATPK3, PK3 | serine/threonine protein ki... 1906 0.0 > AT5G08160.1 | Symbols: ATPK3, PK3 | serine/threonine protein kinase 3 | chr5:2625559-2628110 REVERSE LENGTH=1556 Length=1556 Score = 1906 bits (1032), Expect = 0.0 Identities = 1126/1171 (96%), Gaps = 8/1171 (1%) Strand=Plus/Plus Query 1 ATCGATTCGTTGGTCAAGAGGAGACTGTGCGTAGTGTGATTCGTGAGCATGGGCTGTTCG 60 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 124 ATCGATTCGTTGGTCAAGAGGAGATTGTGC---GTGTGATTCGTGAGCATGGGCTGTTCG 180 Query 61 TTTTCGGGATTGAACGCGCTTTACGACGCCGTCAACGGCGGAGGCGACGTCTGGATCAAT 120 ||||| ||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 181 TTTTCAGGATTGAACGCACTTTACGACGCCGTCAACGGTGGAGGTGACGTATGGATCAAT 240 Query 121 GAGAATCGGTTCAGGATCGTCAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG 180 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAGAATCGATTCAGGATCGTGAGGCAGCTCGGCGAAGGAGGTTTCGCATTCGTCTTTTTG 300 Query 181 GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTCAAGGAAATTGTCGCCGACGCTTCCTCCGCCGCATCCGGTGGTGGTCTAGCTAAGAAA 360 Query 241 GTCAAGGATCCGGCTCATCTCTCCGCTGATGGAACTTATGCTATGAAGAAAGTTTTGATT 300 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 GTCAAGGATCCGGCTCATCTCTCCGCTGACGGAACTTATGCTATGAAGAAAGTTTTGATT 420 Query 301 CAGAACAAGGAGCAATTGGAATTGGTGCGGGAGGAGATCCGTGTTTCATCATTGTTCAAT 360 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 421 CAGAACAAGGAGCAATTGGAATTGGTGCGTGAGGAGATCCGTGTTTCTTCATTGTTCAAT 480 Query 361 CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CACCCTAATTTGCTTCCACTCCTTGATCATGCCATTATTTCTGTTAAGGACGGCCAAGAG 540 Query 421 GGAGCTTGGAAACACGAGGCCTTCTTGCTATTTCCTGTTCACTTGGATGGGACCTTGCTG 480 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 541 GGAGCTTGGAAACACGAGGCCTTCTTGCTGTTTCCTGTTCACTTGGATGGGACCTTGCTG 600 Query 481 GATAATTTCACTTTGATGAAGGCTAAAAAGGAAACATTCTCAACAACTGATGTTTTGCAC 540 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 601 GATAATTTCACTTTGATGAAGGCTAAAAAAGAAACTTTCTCAACAACTGATGTTTTGCAC 660 Query 541 ATATTCCGTCAGCTTTGTGATGGACTCAAACACATGCACTCTCTGGAGCCACCTTATGCT 600 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 661 ATATTCCGTCAGCTTTGTGATGGACTTAAACACATGCACTCTCTGGAGCCACCATATGCT 720 Query 601 CACAACGATGTCAAACCTGGAAACGTGCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT 660 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 721 CACAACGATGTCAAACCTGGCAACGTCCTTTTAACACGTAGAAAAGGACAGCCTCCTCTT 780 Query 661 GCGATTTTGATGGACTTTGGGAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA 720 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCGATATTGATGGACTTTGGAAGTGCTCGCCCATCACGGAAGCAAATCCGTTCCCGTCAA 840 Query 721 GAGGCCTTACAATTACAGGAATGGACATCTGAGCATTGTTCAGCACCGTTTCGAGCTCCC 780 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 841 GAGGCCTTACAGTTACAGGAATGGACATCTGAGCATTGCTCAGCACCGTTTCGAGCTCCC 900 Query 781 GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGACGAGAGAACAGATATCTGGTCACTA 840 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 901 GAGCTCTGGGATTGCCCAAGCCATGCTGATATTGATGAGAGAACAGATATCTGGTCACTA 960 Query 841 GGCTGCACATTATATGCAATAATGTACGGTGTGTCTCCATTCGAGTATGCTCTTGGAGAA 900 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 961 GGCTGCACATTATATGCAATAATGTATGGTGTGTCTCCATTCGAGTATGCGCTTGGAGAA 1020 Query 901 TCTGGTGGAAGTCTTCAGCTCGCAATCGTGAACGCTCAGATCAAGTGGCCAAACACTGGA 960 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1021 TCTGGTGGAAGTCTTCAGCTTGCAATCGTGAACGCTCAGATCAAATGGCCAAACACTGGA 1080 Query 961 CCAAAGGCTTCTTATCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAG 1020 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 CCAAAAGCTTCTTACCCTGAAGCTCTTCACCAGTTCGTAACTTGGATGCTGCAACCACAA 1140 Query 1021 GCTGCGGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAGTTGATCGCTAAA 1080 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1141 GCTGCTGTTCGACCGCGCATAGACGATATCATCATCCATGTCGACAAATTGATCGCTAAA 1200 Query 1081 TTCACCAAATGATTTCCTAATTATGGTGGTTTTCCAAAAA-GGTGAAAGGAG-GAAAAGA 1138 |||||||||||||| || ||||||| |||||||| ||||| |||||||||| ||||||| Sbjct 1201 TTCACCAAATGATTCCCGAATTATGTTGGTTTTCAAAAAAAGGTGAAAGGAAAGAAAAGA 1260 Query 1139 AAAAGACTCTTTATACATTGCTTTGTCTCTT 1169 | ||||||||||||||||||||||||||| Sbjct 1261 A---GACTCTTTATACATTGCTTTGTCTCTT 1288 Score = 187 bits (101), Expect = 2e-46 Identities = 163/190 (86%), Gaps = 15/190 (8%) Strand=Plus/Plus Query 1161 TTGTCTCTTCGTAATGTATTTTGAACTATTTAGGATTCGGGGTCTTCTTTTTGACTATGG 1220 ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 1357 TTG-CTCTTCGTAATGTATTTTGAACTTTTTAGGATTCGGGGTTTTCTTTTTGACTATGG 1415 Query 1221 GAAGTTGTGAACCAATAAATTTACTTAAAGGACAATATAAAT--TAGTTGTCTTAATTCT 1278 |||||||||||||||||||||||||||| | ||| |||| | |||||||| ||||||| Sbjct 1416 GAAGTTGTGAACCAATAAATTTACTTAA-G-ACAGTATATCTCGTAGTTGTCCTAATTCT 1473 Query 1279 GGACAAT-ATG-TCGATGATGCGT-TTATAAATTTGTGCTGATTAAAAAATATATTAATT 1335 || | || ||| | | | |||| | |||||| |||||||||||| | | | | |||||| Sbjct 1474 GGTCGATGATGCT-G-TAATGC-TATTATAATTTTGTGCTGATTCATA--T-T-TTAATT 1526 Query 1336 ATAACCATAG 1345 |||||||||| Sbjct 1527 ATAACCATAG 1536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66214518855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5