BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487662 Length=1456 Score E Sequences producing significant alignments: (Bits) Value AT5G08300.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | ... 2388 0.0 AT5G23250.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | ... 1075 0.0 > AT5G08300.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:2667412-2669923 FORWARD LENGTH=1462 Length=1462 Score = 2388 bits (1293), Expect = 0.0 Identities = 1406/1460 (96%), Gaps = 9/1460 (1%) Strand=Plus/Plus Query 1 AAAAGTGTAGCC-TTAAGAGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCCTC 59 |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1 AAAAGTGTAGCCTTTAA-AGGAAGCCTCTTTTGTCGGCTTTTGATCTCAGCTGATTCTTC 59 Query 60 AAAACTAAGCTCCGCTGAATTTTCTTTGTTCCATTTCCGTCTTCACCCAGTTTAGGGTTC 119 ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 60 AAAACCGAGCTCCGCTGAATTTTCTTTGCTCCATTTCCGTCTTCACACAGTTTAGGGTTC 119 Query 120 ACAAGTTGATTCGGATCGAGAA-CACCGAGAAGAAGAAGCCAGTCAATCATGTCTAGGCA 178 |||| |||||||||||||| || ||||||||||||||||||| |||||||||||||| || Sbjct 120 ACAACTTGATTCGGATCGA-AAGCACCGAGAAGAAGAAGCCAATCAATCATGTCTAGACA 178 Query 179 AGTCGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGTGGCAAGGCTTATCGGATCTCTGTCATCAAAAGCTCGCCGTTGTTCTACCGGCGGCTC 238 Query 239 GGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AGAGGTTTTTCCGTCATGCCAGTCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTC 298 Query 299 GGATCCTCATCCTCCTGCGGCTGTTTTCGTTGACAAAAACACACGAGTCATGTGTCAAGG 358 ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| Sbjct 299 GGATCCTCATCCTCCTGCGGCGGTTTTCGTTGACAAAAACACACGAGTCCTCTGTCAAGG 358 Query 359 TATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CATCACCGGAAAGAACGGCACTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAAT 418 Query 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAA 478 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 419 GGTGGCAGGAGTGACACCGAAGAAGGGTGGAACAGAACACTTGGGTCTCCCAGTTTTCAA 478 Query 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CTCTGTTGCTGAAGCTAAGGCTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGC 538 Query 539 ACCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TCCTTTTGCTGCTGCTGCTATTATGGAGGGTATTGAGGCTGAGTTAGATCTTATTGTGTG 598 Query 599 TATTACCGAAGGAATCCCTCAACATGACATGGTACGTGTTAAGCATGCTCTTAACGGTCA 658 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 599 TATCACCGAAGGAATCCCTCAACATGACATGGTACGTGTAAAGCATGCTCTTAACAGTCA 658 Query 659 ATCCAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ATCGAAAACTAGGCTGATTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAA 718 Query 719 GATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATC 778 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 719 AATTGGAATTATGCCGGGATACATCCACAAGCCTGGGAAGATTGGAATTGTCTCACGATC 778 Query 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TGGAACCTTGACATATGAAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTAC 838 Query 839 TTGTGTAGGAATTGGTGGGGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAA 898 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 839 TTGTGTAGGAATCGGTGGGGATCCTTTTAACGGGACAAACTTTGTCGACTGCTTGGAGAA 898 Query 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGC 958 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 899 ATTCTTTGTTGATCCTCAAACAGAAGGTATCGTTCTCATTGGAGAAATCGGAGGCACTGC 958 Query 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AGAAGAAGATGCTGCAGCATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTT 1018 Query 1019 TATTGCCGGACTTACTGCACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTC 1078 |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1019 TATTGCTGGACTTACTGCACCACCGGGTCGTCGAATGGGTCATGCCGGAGCCATTGTTTC 1078 Query 1079 TGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCCGGGGTGAAGGT 1138 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1079 CGGTGGTAAAGGTACGGCTCAGGACAAAATTAAGAGTTTGAATGATGCTGGAGTGAAGGT 1138 Query 1139 TGTTGAATCTCCGGCTAAGATTGGAGCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1139 TGTTGAATCTCCGGCTAAGATTGGATCAGCGATGTATGAGCTCTTTCAAGAAAGAGGTCT 1198 Query 1199 TTTGAAGCAGTGAAGTGAATTTCACGAGCTTTTTCGCTTCtttttttCCATCTTGAAACC 1258 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 1199 TTTGAAGCAGTGAAGTGAATTTCACTAGCTTT--CGCTTCTTTTTTTCCATCTTGAAACC 1256 Query 1259 TTCAAGaaaaaaagaaaa-aaaaaa-CCCTAATTCCACGCCATTGATGGCTGCACACTCT 1316 |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct 1257 TTCAAGAAAAAA-GAAAAGAAAAAAACCCTAATTCCACGCCATTGATGGCTGCACACTTT 1315 Query 1317 TTTGGGGTTTGTTTTGCTAAATTGATATGATTTTTCCAATTGAAGAGTGATAATTCAAAG 1376 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| Sbjct 1316 TTTGGGGTTTGTTTTGCTATATTGATATGATTTTTCCAATTGAACAGTGATAATTAAAAG 1375 Query 1377 AGATTCAAATCTTATTGCATTGGATCATTTTTAATGATATCTTCCAGTGCAAGAAATATG 1436 ||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||| | Sbjct 1376 AGATTCAAATCTTATGGCATTGGATTATTTTTAATGTTATCTTCCAGTACAAGAAATAAG 1435 Query 1437 AGGGAAGCAATGTTTCTTTA 1456 || ||||||||||||||||| Sbjct 1436 AGTGAAGCAATGTTTCTTTA 1455 > AT5G23250.1 | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830360-7832843 FORWARD LENGTH=1478 Length=1478 Score = 1075 bits (582), Expect = 0.0 Identities = 831/952 (87%), Gaps = 14/952 (1%) Strand=Plus/Plus Query 261 TCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTCGGA-TCCTCATCCTCCTGCGGC 319 ||||||||||| ||| || ||||||||||||| | | | ||||| ||||||||||| Sbjct 179 TCTCTCACTTCATTGGTACAGTCTCGCTCCTTCGGGAC-AACTCCTCCGCCTCCTGCGGC 237 Query 320 TGT-TTTCGTTGACAAAAACACACGAGTCATGTGTCAAGGTATCACCGGAAAGAACGGCA 378 || ||| || |||||||| ||||| ||||| || |||||||| |||||||||||||| | Sbjct 238 GGTCTTT-GTCGACAAAAATACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGA 296 Query 379 CTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCGA 438 | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 297 CCTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAA 356 Query 439 AGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAACTCTGTTGCTGAAGCTAAGG 498 ||||||||||||||||||| || || || |||||||||||| |||||||||||||||||| Sbjct 357 AGAAGGGTGGAACAGAACATTTGGGGCTACCTGTTTTCAACACTGTTGCTGAAGCTAAGG 416 Query 499 CTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGCACCTTTTGCTGCTGCTGCTA 558 |||| || |||||||||||||||||||| || || ||||| ||||| ||||||||||||| Sbjct 417 CTGAGACTAAAGCCAATGCCTCTGTGATCTACGTACCTGCGCCTTTCGCTGCTGCTGCTA 476 Query 559 TTATGGAGGGTATTGAG--GCTGAGTTAGATCTTATTGTGTGTATTACCGAAGGAATCCC 616 | ||||| ||| || || |||||||||||||||||||| ||||| || |||||||| || Sbjct 477 TCATGGAAGGT-TT-AGCTGCTGAGTTAGATCTTATTGTTTGTATCACTGAAGGAATTCC 534 Query 617 TCAACATGACATGGTACGTGTTAA-GCATGCTCTTAACGGTCAATCCAAAACTAGGCTGA 675 ||||||||||||||| ||||| || || |||||||||| ||||||| ||||||||||||| Sbjct 535 TCAACATGACATGGTTCGTGTAAAGGC-TGCTCTTAACAGTCAATCAAAAACTAGGCTGA 593 Query 676 TTGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAAGATTGGAATTATGCCGG 735 |||| || || || ||||| |||||||| |||||||||||||||||||| || ||||| | Sbjct 594 TTGGCCCTAATTGTCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCAG 653 Query 736 GATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATCTGGAACCTTGACATATG 795 ||||||| |||||||| |||||||| || ||||| || ||||||||||| |||||||||| Sbjct 654 GATACATACACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATG 713 Query 796 AAGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTACTTGTGTAGGAATTGGTG 855 |||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||||| Sbjct 714 AAGCTGTTTTCCAAACTACTGCAGTAGGTTTGGGGCAATCTACTTGTGTAGGAATTGGTG 773 Query 856 GGGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAAATTCTTTGTTGATCCTC 915 ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| || | Sbjct 774 GGGATCCGTTTAATGGGACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGTTGACCCCC 833 Query 916 AAACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCAG 975 |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || | Sbjct 834 AAACAGAAGGTATCGTTCTCATTGGAGAAATCGGTGGGACTGCAGAAGAAGATGCCGCTG 893 Query 976 CATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTTTATTGCCGGACTTACTG 1035 | |||||||||| || |||||| || |||||||| |||||||| || ||||||||||||| Sbjct 894 CTTTGATAAAGGAAAATGGTACAGACAAGCCTGTAGTTGCTTTCATAGCCGGACTTACTG 953 Query 1036 CACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTCTGGTGGTAAAGGTACGG 1095 |||||||||| ||||| ||||||||||| |||||||||||||| |||||||| || |||| Sbjct 954 CACCACCAGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCCGGTGGTAAGGGCACGG 1013 Query 1096 CTCAGGACAAAATTAAGAGTTTGA-ATGATGCCGGGGTGAAGGTTGTTGAATCTCCGGCT 1154 |||| ||||| || ||||| | | | || || || || ||||| ||||| || || ||| Sbjct 1014 CTCAAGACAAGATAAAGAGCCTAAGA-GACGCAGGAGTTAAGGTGGTTGAGTCACCAGCT 1072 Query 1155 AAGATTGGAGCAGCGATGTATGAGCTCTTTC-AAGAAAGAGGTCTTTTGAAG 1205 |||||||| || ||||||| |||||| |||| |||||||||||||||||||| Sbjct 1073 AAGATTGGTGCGGCGATGTTTGAGCT-TTTCCAAGAAAGAGGTCTTTTGAAG 1123 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71786779350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5