BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487670
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08370.1 | Symbols: AtAGAL2, AGAL2 | alpha-galactosidase 2 |... 1973 0.0
AT5G08380.1 | Symbols: AtAGAL1, AGAL1 | alpha-galactosidase 1 |... 213 4e-54
> AT5G08370.1 | Symbols: AtAGAL2, AGAL2 | alpha-galactosidase 2
| chr5:2690879-2693538 REVERSE LENGTH=1525
Length=1525
Score = 1973 bits (1068), Expect = 0.0
Identities = 1239/1320 (94%), Gaps = 17/1320 (1%)
Strand=Plus/Plus
Query 1 TTTTGATTTTTCTTGAAtctctctctctctctctGAGTCAGTGTATAGCCATTGAAGGAA 60
||||||||||||||||| | ||||||||||||| | || || ||||||||||||||| |
Sbjct 18 TTTTGATTTTTCTTGAA-C-CTCTCTCTCTCTC--AATCTGTTTATAGCCATTGAAGG-A 72
Query 61 ATTaaaaaaaaaaaGCTTGATCAAGCAATGGTTCTTATTGGTTTCTTCTTAAGATTCATT 120
| | || |||||||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 73 A--ACAAGAAAAAAGCTTGATCAAGCAATGGTTCTTCTTAGTTTCTCCTTAAGATTCATT 130
Query 121 ACCTTCACTCTGACTCTGACTCTGA-TC-G--T--TGATGGGTTTCAGAGTCGAATGTTG 174
| |||||||||||| | ||||||| || | | |||||||||||||||||||||||||
Sbjct 131 GCGTTCACTCTGACTATAACTCTGACTCAGATTGCTGATGGGTTTCAGAGTCGAATGTTG 190
Query 175 ATGCACAATGGACTTGCTCTCTCTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG 234
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 ATGAACAATGGACTTGCTCTCTCTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG 250
Query 235 TGTAACATCAATGAGACCCTCATCAAACAAACCGCTGATGCAATGGTTTCTAGTGGTCTT 294
||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 251 TGTAATATCAATGAAACCCTTATCAAACAAACCGCTGATGCAATGGTTTCAAGTGGTCTT 310
Query 295 TCTGCAATAGGTTACAAGTATATCAACATAGATGATTGTTGGGGTGAACTCAAGAGAGAT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TCTGCAATAGGTTACAAGTATATCAACATAGATGATTGTTGGGGTGAACTCAAGAGAGAT 370
Query 355 TCTCAGGGGAGTTTGGTTGCGAAAGCATCGACATTTCCTTCAGGAATCAAGGCTTTATCA 414
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 371 TCTCAGGGGAGTTTGGTTGCAAAAGCATCAACATTTCCTTCAGGAATCAAAGCTTTATCA 430
Query 415 GATTATGTTCATAGCAAAGGGCTAAAGCTTGGGATATACTCTGATGCCGGGACTCTTACC 474
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 431 GATTATGTTCATAGCAAAGGGCTAAAACTTGGGATATACTCTGATGCCGGGACTCTTACC 490
Query 475 TGCAGCCAAACCATGCCGGGCTCACTCGGGCATGAAGAACAAGATGCCAAAACATTTGCC 534
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 491 TGCAGCCAAACCATGCCGGGATCACTCGGGCATGAAGAACAAGATGCCAAGACATTTGCC 550
Query 535 TCATGGGGGATTGATTACCTGAAGTATGATAACTGCGAAAATACTGGGACAAGTCCAAGA 594
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 551 TCATGGGGGATTGATTACCTCAAGTATGATAACTGCGAAAATACAGGGACAAGTCCAAGA 610
Query 595 GAAAGATACCCTAAGATGAGCAAAGCTCTGCTAAATTCAGGAAGATCCATATTCTTCTCT 654
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 611 GAAAGATACCCTAAGATGAGTAAAGCGCTGTTAAATTCAGGAAGATCCATATTCTTCTCT 670
Query 655 CTGTGTGAATGGGGACAAGAGGATCCAGCAACTTGGGCAGGAGATATTGGCAACAGTTGG 714
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CTGTGCGAATGGGGACAAGAGGATCCAGCAACTTGGGCAGGAGATATTGGCAACAGTTGG 730
Query 715 AGAACAACAGGAGACATCCAAGATAACTGGAAAAGCATGACCCTGATAGCAGATCAAAAT 774
|||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||
Sbjct 731 AGAACAACAGGAGATATCCAAGATAATTGGAAAAGCATGACATTGATAGCGGATCAGAAT 790
Query 775 GATCGATGGGCATCTTATGCAAGACCAGGATCGTGGAACGATCCAGACATGCTTGAAGTG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 GATCGATGGGCATCTTATGCAAGACCAGGATCGTGGAACGATCCAGACATGCTTGAAGTG 850
Query 835 GGAAATGGAGGGATGACTAAGGAAGAATACAGGTCGCATTTCAGCATCTGGGCATTGGCA 894
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 851 GGAAATGGAGGCATGACTAAGGAAGAATACATGTCGCATTTCAGCATCTGGGCATTGGCA 910
Query 895 AAAGCTCCTCTGCTGATAGGGTGTGATCTTAGATCGATGGACAATGTTACCTTCGAGTTG 954
||||||||||||||||| || || |||||||||||||||||||| ||||| || || |||
Sbjct 911 AAAGCTCCTCTGCTGATCGGCTGCGATCTTAGATCGATGGACAAAGTTACATTTGAATTG 970
Query 955 CTTAGCAACAAAGAGGTGATTGCTGTTAATCAAGACAAACTTGGGATCCAGGGAAAGAAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CTTAGCAACAAAGAGGTGATTGCTGTTAATCAAGACAAACTTGGGATCCAGGGAAAGAAA 1030
Query 1015 ATCAAGAAAGATGGTGATCTTGAGGTATGGGCAGGTCCGCTAAGCAAGAAACGAGTAGCG 1074
| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1031 GTAAAGAAAGAAGGTGATCTTGAGGTATGGGCAGGTCCACTAAGCAAGAAACGAGTAGCG 1090
Query 1075 GTCATCCTATGGAACAGAGGATCAGTATCTGCCAAA-ATCACAGCTCGATGGGCTGACAT 1133
||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||
Sbjct 1091 GTCATCCTATGGAACAGAGGATCAGCATCTGC-AAACATCACAGCTCGATGGGCTGAGAT 1149
Query 1134 TGGCCTTAGTTCATCAGATATTGTTAATGCTCGTGACTTATGGGAGCATTCGACACATTC 1193
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1150 TGGCCTCAATTCATCAGATATTGTTAATGCTCGTGACTTATGGGAGCATTCGACATATTC 1209
Query 1194 ACGTGTTAAAAATCAACTCTCTGCCTTAGTGGAGCCTCATGCCTGCAAAATGTACACTCT 1253
| |||||||||| || || |||||| |||||||||||||||||||||||||||| |||||
Sbjct 1210 ATGTGTTAAAAAGCAGCTATCTGCCCTAGTGGAGCCTCATGCCTGCAAAATGTATACTCT 1269
Query 1254 TACAAGACGCAAGGCATAAGAT-CCTGCTCTAATGCAGCTAAAGTTATGGAAGTAAAACT 1312
|||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||
Sbjct 1270 TACAAGACGCAAGGCATAAGATGCCAA-TCTGGTGCAGATAAAGTTATGGAAGTAAAACT 1328
> AT5G08380.1 | Symbols: AtAGAL1, AGAL1 | alpha-galactosidase 1
| chr5:2694677-2697724 REVERSE LENGTH=1515
Length=1515
Score = 213 bits (115), Expect = 4e-54
Identities = 650/896 (73%), Gaps = 86/896 (10%)
Strand=Plus/Plus
Query 197 CTCCTCAAATGGGATGGAACAGCTGGAATCATTTTCAG-TGTAACATCA-ATGAGACCCT 254
|||||| ||||| ||||| |||||||| |||||| || || ||||| | |||| | |
Sbjct 266 CTCCTCCCATGGGGTGGAATAGCTGGAACCATTTT-AGCTGCAACAT-AGATGAAAAAAT 323
Query 255 CATCAAACAAACCGCTGATGCAATGGTTTCTAGTGGTCTTTCTGCAA--TAGGTTACAAG 312
|||||| |||| |||||||| ||||| | | ||| || ||| || | || |||||
Sbjct 324 GATCAAAGAAACTGCTGATGCTTTGGTTACCACTGGCCTCTCT--AAGCTTGGCTACAAC 381
Query 313 TATATCAACATAGATGATTGTTGGGGTG-AA-CTCAAGAGAGATTCTCAGGGGAGTTTGG 370
||| | ||||| |||||||| |||| || || || | || | | |||| ||| |||
Sbjct 382 TATGTTAACATCGATGATTGCTGGGCTGAAATTTCTCGTGACA-GC-AAGGGAAGTCTGG 439
Query 371 TTGCGAAAGCA-TCGACATTT-CCTTCAGGAATCAAGGC-TTTATCAGATTATGTTCATA 427
||| |||| | || || ||| ||||| ||||| || || || | ||||||||||| |
Sbjct 440 -TGCCAAAGAAGTCAAC-TTTCCCTTCTGGAATTAAAGCGGTT-GCGGATTATGTTCACA 496
Query 428 GCAAAGGGCTAAAGCTTGGGATATACTCTGATGCCGGG-ACTCTT-ACCTGCAGCCAAAC 485
| ||||| || ||||||||||| ||||| ||||||||| | | || || ||||| ||||
Sbjct 497 GTAAAGGCCTTAAGCTTGGGATTTACTCAGATGCCGGGTA-T-TTCACTTGCAGTAAAAC 554
Query 486 CATGCCGGGCTCACTCGGGC-ATGAAGAACAAGATGCCAAAACATTTGCCTCATGGGGGA 544
|||||| || || | ||| | || || || |||||||| |||||||| |||||| |
Sbjct 555 CATGCCAGGTTC-TTTAGGCTACGAGGAGCATGATGCCAAGACATTTGCAGAATGGGGAA 613
Query 545 TTGATTACCTGAAGTATGATAACTGCGAA-A-ATACTGGGAC-AAGTCCAAGAGAAAGAT 601
|||||||| |||||||||| |||||| || | | ||| | || || | | || |
Sbjct 614 TTGATTACTTGAAGTATGACAACTGC-AACAGCGA-TGGCTCTAA-ACCTACTGTCAGGT 670
Query 602 ACCCTA-AGATGAGC-AAAGCTCTGCT-AAATTCAGGAAGATCCATATTCTTCTCTC--T 656
| || | ||||| | ||||||| | ||| || || | |||| | ||| ||| |
Sbjct 671 ATCC-AGTGATGA-CTCGAGCTCTGATGAAA-TCTGGCCGCCCCAT-CT-TTCACTCATT 725
Query 657 GTGTGAATGGGGACAAGA-GGATCCAGCAACT-TGGGCAGGAGAT--A-TTGGCAACAGT 711
||||||||||||| | | | ||||||| || | || ||| | | | |||||||||
Sbjct 726 GTGTGAATGGGGA-GATATGCATCCAGC-TCTAT-GG--GGATCTCCAGTAGGCAACAGT 780
Query 712 TGGAGAACAACAGGA-GACATCCAAGATAAC-TGGAAAAGCATGACCCT-GATAGCAGAT 768
|||||||| || | ||||| ||||| || ||| || |||| || ||||||||
Sbjct 781 TGGAGAACCAC-TAATGACATTAAAGAT-ACTTGGCTTAGTATGA-TCTCAATAGCAGA- 836
Query 769 CA-AAATG-A-TCGATG-GGCATCTTATGCAAGACCAGGATCG-TGGAACGATCCAGACA 823
|| |||| | || | | | | | |||||||||| || | | |||||||| || || |
Sbjct 837 CATGAATGAAGTCTACGCTG-AGC--ATGCAAGACCTGG-TGGCTGGAACGACCCGGATA 892
Query 824 TGCTTGAAGTGGGAAATGGAGGGATGACTAAGGAAGAATACAG-GTCGCATTTCAGCATC 882
|||||||||||||||||||||||||||| || || || |||| ||| |||||||||||
Sbjct 893 TGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTC-CATTTCAGCATA 951
Query 883 TGGGCATTGGCAAAAGCTCCTCTGCTGA-TAGGGTGTGATCTTA-GAT-CGATGGAC-AA 938
|||||| | |||| |||||||| || | | || ||||| | || || | ||| || ||
Sbjct 952 TGGGCAATCTCAAAGGCTCCTCTTCT-ACTTGGTTGTGA-CATAAGAAAC-ATG-ACCAA 1007
Query 939 TGTTACCTTCGAG-TTGCTTAGC-AACAAAGAGGTGATTGCTGTTAATCAAGA-CAAACT 995
| || | ||| ||| | || ||||| || || |||||| |||||||||| | | |
Sbjct 1008 AGAAACAATGGAGATTG-TC-GCCAACAAGGAAGTCATTGCTATTAATCAAGATCCA-CA 1064
Query 996 TGG-GATCCAGGGAAAGAAAATCAAGAAAG-ATGGTGATCTTGAGGTATGGGCAGG 1049
||| | || ||| |||||| | | ||| | | || ||||| ||||| ||||||||
Sbjct 1065 TGGTGTTC-AGGCCAAGAAAGTTA-GAATGGAAGGCGATCTCGAGGTTTGGGCAGG 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5