BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487707
Length=2106
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08660.1 | Symbols: | Protein of unknown function (DUF668) ... 3345 0.0
> AT5G08660.1 | Symbols: | Protein of unknown function (DUF668)
| chr5:2814087-2818019 FORWARD LENGTH=2303
Length=2303
Score = 3345 bits (1811), Expect = 0.0
Identities = 2023/2124 (95%), Gaps = 19/2124 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGTTTTTGCTCCAAGAGCCTTGGAATCAATTTTGGCAGCGAGTATTCAGGTTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 ATGGGGAGTTTTTGCTCCAAGAGCCTTGGAATCAATTTTGGCAGCGAGTATTCTGGTTCT 239
Query 61 AGTGTGGCTGATGATGGTCGAGAACCTGATTTTGGCCACCCACAACCAAATGGACAAACC 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 240 AGTGTGGCTGATGATGGTCGAGAACCTGATTTTGGCCACTCACAACCAAATGGGCAAACC 299
Query 121 AGTTTGATTGTTCCTGGTATGAGGCAGCTTATGGTTAAAGACGTTAAGGAACAAAACCAA 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 300 AGTTTGATTGTTCCTGGTATGAGGCAGCTTATGGTTAAAGACGTCAAGGAACAAAATCAA 359
Query 181 TTAAAAGATGTTTTCTCTTTCCGCGAAAGGGAAACTGAAGATAATTTCTATGATGGGATT 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 360 TTAAAAGATGTTTTCTCTTTCCGCGAAAGGGAAGCTGAAGATAATTTCTATGATGGAATT 419
Query 241 CCGACGTATACCATGGCTCCATCACAGAAAATCCGGTCTGCAAAATCAACTCAAACCGCA 300
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CCGACGTATACTATGGCTCCATCACAGAAAATTCGGTCTGCAAAATCAACTCAAACCGCT 479
Query 301 GTTTCAAAGGTTACAGAGGCAAGTGTGCTTTTAGGCAAAGCGGGGTTAGGTAAAGCAAAG 360
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 480 GTTTCAAAGGTTACAGAGGCAAGTAAGCTTTTAGGCAAAGCGGGGTTAGGTAGAGCAAAA 539
Query 361 GATGTTTTGGATACCCTTGGGAGTAGCATGACGGATCTTAGCAGTGGTGGATTTACTTCT 420
|||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||
Sbjct 540 GATGTTTTGGATACCCTTGGAAGTAGCATGACAGATCTTAGTAGCGGTGGATTTACTTCT 599
Query 421 GGAATAGCAACTAAAGGCAATGAACTCGGGATCTTATCTTTTGAAGTAGCAAACACAATT 480
||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 600 GGAGTTGCAACTAAAGGCAATGAACTTGGGATCTTAGCTTTTGAAGTAGCAAACACAATT 659
Query 481 GTTAAAAGCTCAAATCTCATTGATTCTCTTTCTAAGAGGAACATCGAGTATTTAAAAGAA 540
|| |||||||||||||||||||| || ||||||||||||||||||||| ||||||||| |
Sbjct 660 GTCAAAAGCTCAAATCTCATTGAATCCCTTTCTAAGAGGAACATCGAGCATTTAAAAGGA 719
Query 541 ACTGTCCTTTGTTCCGAGGGTGTTCAAAATTTAGTCTCGAATGATTTCCATGAACTCCTC 600
||| |||||| ||| |||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 720 ACTATCCTTTATTCTGAGGGTGTTCAAAACCTAGTCTCGAATGATTTCGATGAACTACTC 779
Query 601 AGACTTGTTGCAGCTGATAAGAGGCAGGAGCTGCAAGTTTTCTCGGGAGAAGTGGTTCGG 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 AGACTTGTTGCAGCTGATAAGAGGCAGGAGCTGCAAGTTTTCTCGGGGGAAGTGGTTCGG 839
Query 661 TTTGGAAACCGATCCAAAGATTTTCAGTGGCATAATTTACAGCGCTATTTCGATAGGATT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTTGGAAACCGATCCAAAGATTTTCAGTGGCATAATTTACAGCGCTATTTCGATAGGATC 899
Query 721 AGCAAAGAATTAACTCCTCAAAGGCAATTAGAGGAAGACGCGGTGTTGATTGTTGATCAA 780
|||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| |||
Sbjct 900 AGCAAAGAATTAACCCCTCAAAGGCAGTTAAAGGAAGACGCGGTGTTGGTTGTTGACCAA 959
Query 781 CTGATGGTTCTAGTGCAGTATACTGCTGAACTATACCAAGAACTCCAAGTATTGTATCGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTGATGGTTCTAGTGCAGTATACTGCTGAACTATACCAAGAACTCCAAGTATTGTATCGA 1019
Query 841 TTGGAGAAAGACTATGAGCAAAAGCGTCGAGAAGAAGAGAACTCAGCTAACAGCAGTAAG 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 TTGGAGAAAGACTATGAGCAAAAGCGTCGAGAAGAAGAGAACTCAGCTAATAGCAGTAAG 1079
Query 901 GGTGATGGCCTTGCAATCTTaaaaacggaacttaaagcccagaaaaaggtagtgaaaagc 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1080 GGTGATGGCCTTGCAATCTTAAAAACGGAACTTAAAGCCCAGAGAAAGGTAGTGAAAAGC 1139
Query 961 ttaaagaaaaagTCGTTGTGGTCCAGAGGTTTTGAAGAGGTGATGGAGAAACTAGTAGAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTAAAGAAAAAGTCGTTGTGGTCCAGAGGTTTTGAAGAGGTGATGGAGAAACTAGTAGAC 1199
Query 1021 ATTGTACATTTCTTGTTGCTAGAGATTCATAATATCTTCGGTGGTGCCGATGATCAACCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATTGTACATTTCTTGTTGCTAGAGATTCATAATATCTTCGGTGGTGCCGATGATCAACCA 1259
Query 1081 TCGAAGAAAGGAGCTGCAGATTATGATAAAAGATTGGGACCTGCTGGTCTTGCTTTACAT 1140
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCGAAGAAAGGAGCTGCAGAATATGATAAAAGATTGGGACCTGCTGGTCTTGCTTTACAT 1319
Query 1141 TATGCAAATATAATTGTGCAAATTGATACACTTGTCGCTCGTGCAAGCTCTATAACTTCA 1200
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1320 TATGCAAATATAATTGTGCAGATTGACACACTTGTCGCTCGTGCAAGCTCTATAACTTCA 1379
Query 1201 AATGCAAGGGATTCTCTGTACCAAAGCTTGCCACCTGGTATAAAATTGGCTCTTCGTTCC 1260
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1380 AATGCAAGGGATTCTCTTTACCAAAGCTTACCACCTGGTATAAAATTGGCTCTTCGTTCC 1439
Query 1261 AAGATAAAATCTTTCAATGTCGATAAGGAGCTTTCGGTTACACAAATTAAGGATGAGATG 1320
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAGATTAAATCTTTCAATGTCGATAAGGAGCTTTCGGTTACACAAATTAAGGATGAGATG 1499
Query 1321 GAGAGGACACTGCATTGGCTTGTCCCTGTTGCAGGCAATACCACAATAGCGCATCATGGT 1380
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1500 GAGAGGACACTGCATTGGCTTGTCCCTGTTGCAGGCAATACAACAAAAGCGCATCATGGT 1559
Query 1381 TTTGGCTGGGTTGGAGAGTGGGCAAATACAGGGACTGATTTCACTAGTAAGCCTAGTGGT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTTGGCTGGGTTGGAGAGTGGGCAAATACAGGGACTGATTTCACTAGTAAGCCTAGTGGT 1619
Query 1441 GGAGACATACTACGTATCGAAACACTCTATCACGCTAGTAAAGAAAAGACAGAGATCTAC 1500
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGAGATATACTACGTATTGAAACACTCTATCACGCTAGTAAAGAAAAGACAGAGATCTAC 1679
Query 1501 ATTCTTGGACAGATAATTTGGTTACAACATTTGGTTACAAAAGCGAAGAGCGACGCTCGA 1560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1680 ATTCTTGGACAGATAATTTGGTTACAACATTTGGTTACAAAAGCTAAGAGCGACGCTCGA 1739
Query 1561 GGAGTTCCTAGACTTTCTTCTATCAAGTCTCCATTGAATACTACAAACCAGCAAATAATA 1620
|||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||
Sbjct 1740 GGAGGTCCTAGACTTTCTTCTATCAAGTCTCCATTGGATACTACGAACCAGCAATTGATA 1799
Query 1621 TCTGAACCACTCAGTGTCCCATTAGTAACAGATGAGGAGCAAAAGCTGTTACAACAGGCA 1680
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1800 TCTGAACCACTCAGTGTCCCAATAGTAACAGATGAGGAGCAAAAGATGTTACAAGAGGCA 1859
Query 1681 AGCACA-AGAAAGAGAACTCTATGTGTTAGCAAGAGTCAGGATTTTGATTCTGAGTACTC 1739
|||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1860 AGCA-AGAGAAAGAGAACTCCATGTGTTAGCAAGAGTCAGGATTTTGATTCTGAGTACTC 1918
Query 1740 ACGGGCAAGAAAGTGCGACCCTTTGAGCAAAAGCAGCGAGTATTTTCGTGGAGTGAGAAG 1799
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1919 GCGGGCAAGAAAGTGTGACCCTTTGAGCAAAAGCAGTGAGTATTTTCGTGGAGTGAGAAG 1978
Query 1800 AAGCAAATCAGCTGCAGTGAAGCGGTATTCTTCAGGTTTTCCGCTTCTTGACTTTGCTAT 1859
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1979 AAGCAAATCAGCTGCAGTAAAGCGGTATTCTTCGGGTTTTCCGCTTCTTGACTTTGCTAT 2038
Query 1860 TGACAAGGAAAAAGTGTTGGATGTGATAGATCGGGTCGATGTGCCAAGAGATCATAAAAC 1919
||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |
Sbjct 2039 TGACAAGGAAAAAGTGTTGGATGTGATCGATCGGGTTGATGTGCCAAGAGATTATAAAGC 2098
Query 1920 ATTGTTAAAAGAAAGTAGCTTGAGCTTCTAATGGAGAGTTGTGTGT----------C-C- 1967
||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 2099 ATTGTTAAAAGAAGGTAGCTTGAGCTTCTAATGGAGAGTTGTGTGTTTTGTAGGGTCTCT 2158
Query 1968 ---AATGCACAAAACCGGCTTCTGATTCATACTTGTTTGGTTGT--ATATAAGAGCATAA 2022
|| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2159 GCCAAAGCACAGAACCGGCTTCTGATTCATACATGTTTGGTTGTGTATATAAGAGCATAA 2218
Query 2023 GAGAAAGGGTATGGAAGGAGCTATAATGTGACGTCATGTTATTAGATCATTTGCAATATT 2082
|||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 2219 AAGAAAGGGTATGGAAGAAGCTGTAATGTGACGTAATGTTGTTAGATCATTTGCAATATT 2278
Query 2083 TCAATATAGTGATACATTTTCAGG 2106
||||||||||||||||||||||||
Sbjct 2279 TCAATATAGTGATACATTTTCAGG 2302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104417133600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5