BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487714
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08720.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Streptomy... 3757 0.0
> AT5G08720.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Streptomyces
cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis
thaliana protein match is: Polyketide cyclase / dehydrase
and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:2841418-2845381 REVERSE LENGTH=2324
Length=2324
Score = 3757 bits (2034), Expect = 0.0
Identities = 2225/2316 (96%), Gaps = 17/2316 (1%)
Strand=Plus/Plus
Query 1 ATCTTCTTCCTCCACACTGACACATTTCGTCGAACACCTTTCGCTAATGTCAGTGAGCAA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCTTCCTCTACACTGACACATTTCGTCGAACACCTTTCGCTAATGTCAGTGAGCAA 60
Query 61 ACTTCCTCATCTCTCCCATGGCGTTCACACTATCAACTTCCTCAATTTCACCAACGAACC 120
|||| |||||||| |||||||||||||||||||| |||||||| | |||||
Sbjct 61 GTTTCCACATCTCTCTCATGGCGTTCACACTATCAATTTCCTCAA--T-------GAACC 111
Query 121 AGTGTTTTTAAGTGTATTGCTCCCATGTCCCTCTCGGATTCGAGTATTCTCGACCATTTC 180
||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 112 AGTGTTTTTAAGTGTGTTGCTCCCATCTCCCTCTCGGATTCGAGTATTCTCGTCCATTTC 171
Query 181 CACCACCGGGATCGGCGGCGCTGGGGTCGCCAAGTGCCATGGAACGAGACATAGCGGCGC 240
|||| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 172 CACCTCCGGGATCGGC-G-GC-GGGGTCGCCAAGTGCCATGGAACGAGACATAGCGGCGC 228
Query 241 C---GGTAGAGGTGATAACGGGTTGAGGAGCGATAGTGGATTAGGTTTCGACGAGAGAGG 297
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 229 CGGTGGTAGAGGTGATAACGGGTTGAGGAGAGATAGTGGATTAGGTTTCGACGAGAGAGG 288
Query 298 GGAGAAAAAAGTGCGTTGTGAGGTTGATGTGATCTCTTGGAGAGAACGGAGGATAAGAGG 357
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 289 AGAGAGAAAAGTGCGTTGTGAGGTTGATGTGATCTCGTGGAGAGAACGGAGGATAAGAGG 348
Query 358 CGAAATCTGGGTCGATTCCGATTCTCAATCTGTTTGGAATGTTCTCACTGATTATGAACG 417
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 349 CGAAATCTGGGTCGATTCTGATTCTCAATCTGTTTGGAATGTTCTTACTGATTATGAACG 408
Query 418 ACTTGCTGATTTCATACCCAATCTCGTTTGGAGTGGAAGAATTCCTTGTCCACATCCAGG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACTTGCTGATTTCATACCCAATCTCGTTTGGAGTGGAAGAATTCCTTGTCCACATCCAGG 468
Query 478 ACGTATATGGCTGGAGCAACGAGGCCTTCAAAGAGCCTTGTATTGGCATATCGAGGCTCG 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 469 ACGTATATGGCTGGAGCAACGAGGCCTTCAAAGAGCCTTGTATTGGCATATTGAGGCTCG 528
Query 538 TGTTGTCCTTGATCTCCATGAGTGTCTAGATTCTCCAAATGGCCGTGAGCTTCACTTCTC 597
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 529 TGTTGTCCTTGATCTCCATGAGTGTCTAGATTCTCCAAATGGTCGTGAGCTTCACTTCTC 588
Query 598 TATGGTAGATGGTGATTTCAAAAAGTTTGAGGGAAAGTGGTCTGTGAAATCTGGTATCAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TATGGTAGATGGTGATTTCAAAAAGTTTGAGGGAAAGTGGTCTGTGAAATCTGGTATCAG 648
Query 658 GTCCATAGGAACTGTCTTGTCATACGAAGTAAACGTAATCCCCAGATTTAACTTCCCTGC 717
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 649 GTCCGTAGGAACTGTCTTGTCATACGAAGTAAACGTAATCCCAAGATTTAACTTCCCTGC 708
Query 718 CATTTTCTTAGAGAGGATAATCAGATCAGATCTTCCTGTAAATCTCCGGGCCGTAGCTCG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CATTTTCTTAGAGAGGATAATCAGATCAGATCTTCCTGTAAATCTCCGGGCCGTAGCTCG 768
Query 778 CCAAGCTGAGAAAATTTATAAAGATTGCGGAAAGCCGTCAATAATAGAAGATTTGTTGGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CCAAGCTGAGAAAATTTATAAAGATTGCGGAAAGCCGTCAATAATAGAAGATTTGTTGGG 828
Query 838 TAGAATATCTTCACAGCCAGCCCCTTCTCATGGTGTTGAGTTCGAAAGTCTTGCTACTGA 897
|| ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||
Sbjct 829 TATAATATCTTCACAGCCAGCCCCTTCTAATGGTATTGAGTTCGATAGTCTTGCTACGGA 888
Query 898 GAGATCTGTTGCCTCCAGTGTTGGATCATTAGCTCATTCAAATGAATTGAACAACAATTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGATCTGTTGCCTCCAGTGTTGGATCATTAGCTCATTCAAATGAATTGAACAACAATTG 948
Query 958 GGGAGTGTATGGAAAAGTCTGCAAGCTTGATAAACCTTGCACCGTGGATGAAGTTCATCT 1017
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GGGAGTGTATGGAAAAGCCTGCAAGCTTGATAAACCTTGCACCGTGGATGAAGTTCATCT 1008
Query 1018 TCGTAGATTTGATGGTCTATTGGAAAATGGAGGTGTTCACCGTTGCGCCGTTGCTAGTAT 1077
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1009 TCGTAGATTTGATGGTCTATTGGAAAATGGAGGTGTTCACCGATGCGCCGTTGCTAGTAT 1068
Query 1078 AACAGTTAAGGCTCCTGTTTGTGAAGTTTGGAAAGTTCTAACTTCTTACGAGAGTCTTCC 1137
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1069 AACAGTTAAAGCTCCTGTTTGTGAAGTTTGGAAAGTTCTAACGTCTTATGAGAGTCTTCC 1128
Query 1138 AGAGATAGTTCCAAATTTGGCAATCAGCAAGATTTTGTCACGCGATAACAATAAGGTCCG 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1129 AGAGATAGTTCCAAATTTGGCAATCAGCAAGATTTTGTCACGCGATAACAATAAAGTCCG 1188
Query 1198 AATACTTCAGGAAGGATGCAAAGGCCTGCTTTACATGGTGCTTCATGCGAGAGCTGTTCT 1257
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1189 AATACTTCAGGAAGGATGCAAAGGCCTGCTTTACATGGTGCTTCATGCAAGAGCTGTTCT 1248
Query 1258 CGATTTGCATGAGATTCGCGAGCAGGAAATCAGATTTGAGCAGGTTGAAGGAGACTTTGA 1317
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1249 CGATTTGCATGAGATTCGTGAGCAGGAAATCAGATTTGAACAGGTTGAAGGAGACTTTGA 1308
Query 1318 ATCGCTAGAGGGAAAATGGATTTTTGAACAATTAGGAAGTCACCACACACTTCTCAAGTA 1377
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1309 CTCGCTAGAGGGGAAATGGATTTTTGAACAACTAGGAAGTCACCACACACTTCTCAAGTA 1368
Query 1378 TACCGTGGAGTCCAAAATGCGAAAAGATTCATTTCTTTCTGAAGCAATCATGGAAGAGGT 1437
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 TACCGTGGAGTCCAAAATGAGAAAAGATTCATTTCTTTCTGAAGCAATCATGGAAGAGGT 1428
Query 1438 TATATATGAAGATCTTCCGTCAAATTTATGCGCTATTCGGGATTACATTGAGAAAAGAGG 1497
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1429 TATATATGAAGATCTTCCGTCAAATTTATGCGCTATCCGGGATTACATTGAGAAAAGAGG 1488
Query 1498 AGAGAAATCTTCAGAGTCATGTAAGCTGGAGACATGTGAAGTTTCAGAGGAAACATGTTC 1557
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1489 AGAGAAATCTTCAGAGTCATGTAAACTGGAGACATGTCAAGTTTCAGAGGAAACATGTTC 1548
Query 1558 TTCATCTCGTGCCACAA-CAGTTGAGACAGTTTACAATAGTGATGATGGTTTGGACCAAA 1616
|||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1549 TTCATCTCGTGCCA-AATCAGTTGAGACAGTTTACAATAATGATGATGGTTCAGACCAAA 1607
Query 1617 CTAAGCAGAGACGGAGGATTCCCGGTCTGCAAAGAGACATTGAAGTATTGAAATCAGAGA 1676
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
Sbjct 1608 CTAAGCAGAGACGGAGGATTCCTGGTCTACAAAGAGACATTGAAGTCTTGAAATCAGAAA 1667
Query 1677 TTCTCAAGTTCATATCAGAACATGGACAAGAAGGATTCATGCCCATGAGGAAGCAGCTTC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TTCTCAAGTTCATATCAGAACATGGACAAGAAGGATTCATGCCCATGAGGAAGCAGCTTC 1727
Query 1737 GGTTACACGGAAGAGTTGACATTGAAAAAGCCATTACAAGAATGGGTGGATTTAGGAGAA 1796
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 GGTTACATGGAAGAGTTGACATTGAAAAAGCCATTACAAGAATGGGTGGATTTAGGAGAA 1787
Query 1797 TAGCTTTGATGATGAATCTTTCACTTGCTTATAAACACCGAAAACCGAAAGGATATTGGG 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 TAGCTTTGATGATGAATCTTTCACTTGCTTATAAACACCGAAAACCGAAAGGATATTGGG 1847
Query 1857 ACAATCTTGAAAACTTGCAGGAGGAGATAGGAAGATTTCAACAGAGTTGGGGAATGGATC 1916
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 ACAATCTCGAAAACTTGCAAGAGGAGATAGGAAGATTTCAACAGAGTTGGGGAATGGATC 1907
Query 1917 CATCATTTATGCCGAGCAGAAAAACGTTCGAACGCGCAGGTCGTTATGACATTGCGCGGG 1976
||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||
Sbjct 1908 CATCATTTATGCCGAGCAGAAAATCTTTCGAACGAGCAGGTCGTTATGACATTGCTCGGG 1967
Query 1977 CGCTGGAGAAATGGGGAGGATTACACGAAGTGTCTCGTCTTCTAGCATTGAACGTGAGAC 2036
|||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1968 CGCTCGAGAAATGGGGAGGATTACACGAAGTATCTCGTCTTTTAGCATTGAACGTGAGAC 2027
Query 2037 ATCCGAACAGACAGGTAAATTCTCGTAAAGACAACGGTAACACGATACTGAGAACTGAAT 2096
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 ATCCAAACAGGCAGCTAAATTCTCGTAAAGACAACGGTAACACGATACTGAGAACTGAAT 2087
Query 2097 CTACCGAGGCCGATTTAAATTCAGCGGTTAATAAGAAAAATAAACCTTACGTCTCTGAAG 2156
|||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 2088 CTACTGAGGCCGATTTAAATTCAACGGTTAATAAGAATAATAAACCTTACGTCTCTCAAG 2147
Query 2157 ATACAGAGAAATGGTTGTATAATCTTAAAGATCTTGATATCAATTGGGTTCAATATTAAA 2216
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2148 ATACCGAGAAATGGTTGTACAATCTTAAAGATCTTGATATCAATTGGGTTCAATATTGAA 2207
Query 2217 GCATTAGTTATGTACATTTCAATATTTGTGTAGTCTTGTAATTCGCAAAGATAAACATGT 2276
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2208 GCATTAATTATGTACATTTCACTATTTGTGTAGTCTTGTAACTCGCAAAGATAAACATGT 2267
Query 2277 ATTTATGTAAATTGCAACATTAGATTGAAATAATCT 2312
|||||||||||||| |||||| ||||||||| ||||
Sbjct 2268 ATTTATGTAAATTGTAACATTGGATTGAAATTATCT 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114758445870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5