BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487785
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09660.4 | Symbols: PMDH2 | peroxisomal NAD-malate dehydroge... 1574 0.0
AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase fam... 110 5e-23
> AT5G09660.4 | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase
2 | chr5:2993444-2995675 REVERSE LENGTH=1463
Length=1463
Score = 1574 bits (852), Expect = 0.0
Identities = 908/936 (97%), Gaps = 0/936 (0%)
Strand=Plus/Plus
Query 55 AGCTTTCTAACGAGAGCACACAGAGGAACACAAAAATGGAGTTTCGTGGAGATGCCAACC 114
||||| |||||||||| | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 90 AGCTTCCTAACGAGAGGAAACTGAGGAACACAACAATGGAGTTTCGTGGAGATGCCAACC 149
Query 115 AGAGGATTGCTAGGATTTCAGCTCATCTCACTCCTCAGATGGAGACGAAGAACTCGGTAA 174
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 150 AGAGGATTGCTAGGATTTCAGCTCATCTCACTCCTCAGATGGAGGCCAAGAACTCTGTAA 209
Query 175 TGGGACGGGAAAACTGCAGAGCGAAAGGTGGGAATCCAGGATTCAAAGTAGCAATTCTTG 234
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 210 TCGGACGGGAAAACTGCAGAGCTAAAGGTGGTAATCCAGGATTCAAAGTAGCAATTCTTG 269
Query 235 GAGCTGCCGGTGGAATTGGACAATCTTTATCTTTGCTGATGAAGATGAACCCTCTTGTCT 294
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GAGCTGCAGGTGGAATTGGACAATCTTTATCTTTGCTGATGAAGATGAACCCTCTTGTCT 329
Query 295 CTTTACTTCATCTCTACGATGTTGTCAATGCACCCGGCGTCACAGCTGACGTCAGTCATA 354
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 330 CTTTACTTCATCTCTACGATGTTGTCAATGCTCCTGGCGTCACTGCTGACGTCAGTCATA 389
Query 355 TGGACACTGGAGCTGTTGTCCGCGGATTCTTGGGAGCGAAGCAGCTTGAGGACGCGCTAA 414
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 390 TGGACACTGGAGCTGTTGTCCGCGGGTTCTTGGGAGCGAAGCAGCTTGAGGACGCGCTAA 449
Query 415 CGGGTATGGATCTTGTGATCATACCAGCTGGTGTACCGAGGAAACCAGGGATGACCCGGG 474
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 450 CGGGTATGGATCTTGTGATCATACCAGCCGGTATACCGAGGAAACCAGGGATGACCCGCG 509
Query 475 ATGATCTGTTTAAAATCAATGCTGGGATTGTTAAGACACTATGTGAAGGTGTAGCAAAAT 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 510 ATGATCTGTTTAAAATCAATGCTGGGATTGTTAAAACACTATGTGAAGGTGTAGCAAAAT 569
Query 535 GTTGTCCTAATGCTATTGTCAACTTGATCAGCAACCCTGTGAACTCTACTGTCCCCATTG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GTTGTCCTAATGCTATTGTCAACTTGATCAGCAACCCTGTGAACTCTACTGTCCCCATTG 629
Query 595 CCGCTGAGGTTTTCAAGAAAGCTGGAACTTATGATCCTAAGAAGCTCCTTGGAGTTACTA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CCGCTGAGGTTTTCAAGAAAGCTGGAACTTATGATCCTAAGAAGCTCCTTGGAGTTACTA 689
Query 655 CACTCGATGTTGCTCGTGCCAACACATTTGTGGCAGAAGTTCTTGGCCTTGATCCAAGAG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CACTCGATGTTGCTCGTGCCAACACATTTGTGGCAGAAGTTCTTGGCCTTGATCCAAGAG 749
Query 715 AAGTCGATGTACCAGTCGTTGGGGGACACGCGGGAGTCACAATCTTGCCACTACTGTCAC 774
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 750 AAGTCGATGTGCCAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCAC 809
Query 775 AGGTTAAACCTCCTAGCAGCTTCACACCTCCAGAAATTGAGTACCTCACAAACCGGATTC 834
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 810 AGGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAACCGGATTC 869
Query 835 AAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGAGCTGGATCTGCAACACTTTCCA 894
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 870 AAAATGGTGGAACTGAAGTTGTGGAGGCAAAAGCTGGAGCTGGTTCTGCAACACTTTCAA 929
Query 895 TGGCATATGCTGCAGCCAAGTTTGCAGATGCTTGCCTTCGCGGGTTAAGAGGAGATGCGA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TGGCATATGCTGCAGCCAAGTTTGCAGATGCTTGCCTTCGCGGGTTAAGAGGAGATGCGA 989
Query 955 ATGTCGTAGAATGCTCTTTTGTTGCTTCACAGGTGA 990
||||||||||||||||||||||||||||||||||||
Sbjct 990 ATGTCGTAGAATGCTCTTTTGTTGCTTCACAGGTGA 1025
Score = 355 bits (192), Expect = 5e-97
Identities = 208/216 (96%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 982 CACAGGTGACAGAGTTAGCTTTCTTTGCAACAAAAGTGCGCCTTGGCCGTACAGGAGCAG 1041
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 CACAGGTGACAGAATTAGCTTTCTTTGCAACAAAAGTGCGCCTTGGCCGTACAGGAGCAG 1149
Query 1042 AGGAAGTGTATCAGCTTGGACCCTTAAACCAATACGAAAGGATTGGTCTGGAGAAAGCAA 1101
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1150 AGGAAGTGTATCAGCTTGGACCCTTAAACGAATACGAAAGGATTGGTCTGGAGAAAGCAA 1209
Query 1102 AAGAAGAACTAGCCGGAAGTATTCAGAAAGGTGTTGAATTCATCAGAAAATGAAAGTGAG 1161
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1210 AAGATGAATTAGCCGGAAGTATTCAGAAAGGTGTTGAATTCATCAGAAAATGAAACTGAG 1269
Query 1162 AGATAATCAGAGAGATACAAAAAGATCTTTCCTCAA 1197
|||||||||||||||||||| ||| | |||||||||
Sbjct 1270 AGATAATCAGAGAGATACAATAAGTTATTTCCTCAA 1305
> AT1G53240.1 | Symbols: mMDH1 | Lactate/malate dehydrogenase family
protein | chr1:19854615-19856937 REVERSE LENGTH=1512
Length=1512
Score = 110 bits (59), Expect = 5e-23
Identities = 158/204 (77%), Gaps = 14/204 (7%)
Strand=Plus/Plus
Query 423 GATCTTGTGATCATACCAGCTGGTGTACCGAGGAAACCAGGGATGACCCGGGATGATCTG 482
||||| || ||||| |||||||||||||| ||||| || || |||||||| || |||||
Sbjct 430 GATCTCGTTATCATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT- 488
Query 483 TTT-AAAATCAATGCTGGGATTGTTAAG-ACACTATGTG-A-AGGTGTAGCAAAATGTTG 538
||| || || |||||||| ||||| ||| || || | || | | | || || | ||
Sbjct 489 TTTCAACATTAATGCTGGAATTGTCAAGAAC-CT-T-TGCACTGCCATCGCCAAGTACTG 545
Query 539 TCCTA-ATGCTATTGTCAACT-TGATCAGCAACCCTGTGAACTCTACTGTCCCCATTGCC 596
|| | |||| || | || | |||||||||||||||||||||||||||| || |||||
Sbjct 546 -CCCACATGCGCTTATTAA-TATGATCAGCAACCCTGTGAACTCTACTGTTCCAATTGCA 603
Query 597 GCTGAGGT-TTTCAAGAAAGCTGG 619
|||||| | ||| ||||| |||||
Sbjct 604 GCTGAGATATTT-AAGAAGGCTGG 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5