BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487865
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1040 0.0
AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 475 3e-133
> AT5G10350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3255434-3257807 REVERSE LENGTH=955
Length=955
Score = 1040 bits (563), Expect = 0.0
Identities = 595/611 (97%), Gaps = 0/611 (0%)
Strand=Plus/Plus
Query 1 AAAATGGAGGAAGAAGAGCACGAGGTTTACGGCGGAGAAATCCCTGAAGTCGACGAGACG 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 59 AAAATGGAGGAAGAAGAGCACGAGGTTTACGGTGGAGAAATCCCTGAAGTCGGCGATACG 118
Query 61 GATGTTCCCGATCCGGATATCGATATGTCTGCCGGCGATGATGACGCCGTTACGGAGCTT 120
|||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 119 GATGTTCCCGATCCGGATATCGATATGTCTGCAGCCGATGAGGACGCCGTTACGGAGCTT 178
Query 121 GCTGAGATGAAGAAGAGATTGAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGCGAGATG 180
||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 179 GCTGAGATGAAGAGGAGATTAAAGGAGATGGAGGAAGAAGCTGCTGCGCTACGAGAGATG 238
Query 181 CAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGTATGGCTGCAAAT 298
Query 241 CAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGATTATGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 CAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAATGTCGACTATGCC 358
Query 301 TGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGTGTAACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 TGTACACCTGAAGAAGTGCAACTACATTTCCAAACATGCGGAACAGTCAACCGGGTAACC 418
Query 361 ATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGAGTTTGTAGAAGTG 478
Query 421 GAAGCTGTGCAAGAAGCTCTGCAACTGAATGAATCAGAGCTACATGGTCGTCAACTGAAG 480
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 479 GAAGCCGTGCAAGAAGCTCTGCAGCTGAATGAATCAGAGCTTCATGGTCGTCAACTGAAG 538
Query 481 GTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCCTGGGCGTTTCAAC 598
Query 541 CCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCTTATTTTTATTCCCCATAT 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 CCTTCAATGGGATACCGCTTTCGCAGACCCTTTGTGCCTCCGTATTTTTATTCCCCATAT 658
Query 601 GGATACGGGAA 611
|||||||||||
Sbjct 659 GGATACGGGAA 669
Score = 267 bits (144), Expect = 2e-70
Identities = 257/305 (84%), Gaps = 34/305 (11%)
Strand=Plus/Plus
Query 676 GGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAGAAACCGTACC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GGAAGGCTCCTAGGTTCAGAAGGCCAATGCGGTACATGCCTTACCAATAGAAACCGTACC 725
Query 736 ACTAGAATAAGAACCAACTATGACAGAGATGATGCCTAGAGAATAGAGGTCGTCCCTATA 795
||||||||| ||||||||||||||||||||| ||| | |||||||| |
Sbjct 726 G---GAATAAGAAG-AACTATGACAGAGATGATGCC--GAG----G---TCGTCCCTCCA 772
Query 796 TTTCCAGCTTTAT-TGATGAATATGATTTTGCCTTTTTATGCACCTGAACTTACTTTTGA 854
|||| |||||||| | |||||||||| ||||| | ||||||||||||| ||||||
Sbjct 773 TTTCGAGCTTTATAT-ATGAATATGACTTTGC-TC-----GCACCTGAACTTAATTTTGA 825
Query 855 ATCGGTCATGTACGGATGAGATTATAAGCTTTTGTTTCCTTA--T---G-T-------GG 901
||| |||||||||||||||||||||||||||||||||| ||| | | | ||
Sbjct 826 ATCTGTCATGTACGGATGAGATTATAAGCTTTTGTTTCTTTAGATTATGATTATATTTGG 885
Query 902 TCGATATTACTTTCAGTTTATATCTTTGTTATTGCTTTCTTTCATCCAAAGCTGGCTAAA 961
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 886 TCGATATTACTTTCAGTTTATATCTTTGTTAGTACTTTCTTTCATCCAAAGGGGGCTAAA 945
Query 962 TAAGT 966
|||||
Sbjct 946 TAAGT 950
> AT5G65260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:26080231-26083017 REVERSE LENGTH=966
Length=966
Score = 475 bits (257), Expect = 3e-133
Identities = 512/631 (81%), Gaps = 33/631 (5%)
Strand=Plus/Plus
Query 4 ATGGAGGAAGAAGAGCACGAGGTTTACGGCGGAGAAA-TCC---C-T--GA-AG-TCGA- 53
||||||||||| ||||||||||||||||| || |||| ||| | | || || | ||
Sbjct 34 ATGGAGGAAGAGGAGCACGAGGTTTACGGTGGTGAAATTCCAGACGTCGGAGAGATGGAT 93
Query 54 CGAG--ACGGATGTTCCCGATCCGGATATCGATATGTCTGCCGGC-GATGATGACGCCGT 110
||| | ||| | || | | || ||| | |||||| ||| | || |||||||| || ||
Sbjct 94 GGAGATATGGAGGCTCTCAACCCCGATTTGGATATGGCTG-CTGCTGATGATGATGCGGT 152
Query 111 TACGGAGCTT-GCTGAGATGAAGAAGA-GATTGAAGGAGATGGAGGAAGAAGCTGCTGCG 168
|| |||| || | ||| |||||||| | ||||||| ||||||||||| |||||||||||
Sbjct 153 TAAGGAG-TTGGATGAAATGAAGAA-ACGATTGAAAGAGATGGAGGACGAAGCTGCTGCT 210
Query 169 CTACGCGAGATGCAAGCAAAAGTCGAAAAAGAAATGGGAGCTACTCAAGATCCTGCTAGT 228
|| || |||||||| || || ||||| || |||||||||| |||||||||||||||||
Sbjct 211 CTGCGTGAGATGCAGGCTAAGGTCGAGAAGGAAATGGGAG---CTCAAGATCCTGCTAGT 267
Query 229 ATGGCTGCAAATCAAGAAGGAAAGGAGGAGGTGGATGCTCGATCAGTTTATGTTGGCAAT 288
|| || || ||||||| ||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 268 ATTGCAGCGAATCAAGCAGGCAAGGAGGAGGTTGATGCTCGATCAGTTTTTGTTGGCAAT 327
Query 289 GTCGATTATGCCTGTACACCTGAAGAAGTGCAACTA-CATTTCCAAACATGCGGAACAGT 347
|| ||||| || || |||||||||||||| || | | ||||||||||||||||| || ||
Sbjct 328 GTTGATTACGCTTGCACACCTGAAGAAGTTCAGC-AGCATTTCCAAACATGCGGCACTGT 386
Query 348 CAACCGTGTAACCATTCTAATGGACAAGTTTGGACAGCCAAAGGGATTTGCTTATGTGGA 407
| | || || |||||||| | ||||| || || ||||||||||||||||| ||||| ||
Sbjct 387 CCATCGGGTGACCATTCTGACAGACAAATTCGGGCAGCCAAAGGGATTTGCATATGTAGA 446
Query 408 GTTTGTAGAAGTCGAAGCTGTGCAAGAAGCTCTGCAACTGAATGAATCAGAGCTACATGG 467
|| || ||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 447 ATTCGTCGAAGTGGAAGCTGTTCAAGAGGCTCTACAACTGAATGAATCAGAGCTACATGG 506
Query 468 TCGTCAACTGAAGGTCTCGCCTAAGCGAACCAATGTTCCTGGAATGAAACAGTATCATCC 527
||||||| | ||||||| || ||| |||| || ||||||||| ||||||||| || |
Sbjct 507 TCGTCAATTAAAGGTCTTGCAGAAGAGAACAAACGTTCCTGGATTGAAACAGT-TC--CG 563
Query 528 TGG--G-CGTTTCAACCCTT-CAATGGGATACCGCTTTCGCAGACCCTTTG-TGCCTCCT 582
||| | || ||||| || | || |||| ||||| || |||||||| ||| || |||||
Sbjct 564 TGGTAGACGATTCAATCCATACA-TGGGTTACCGGTTCCGCAGACC-TTTCATGTCTCCT 621
Query 583 TATTTTTATTCCCCATATGGATACGGGAAAG 613
||| | |||||||||||||||||||| ||||
Sbjct 622 TATATGTATTCCCCATATGGATACGGAAAAG 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5