BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487900
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10650.1 | Symbols: | RING/U-box superfamily protein | chr5... 2704 0.0
AT5G24870.1 | Symbols: | RING/U-box superfamily protein | chr5... 531 1e-149
> AT5G10650.1 | Symbols: | RING/U-box superfamily protein | chr5:3364972-3368127
REVERSE LENGTH=1931
Length=1931
Score = 2704 bits (1464), Expect = 0.0
Identities = 1742/1874 (93%), Gaps = 28/1874 (1%)
Strand=Plus/Plus
Query 99 GGAAAGTGTTTCTTTGATTCATGGATGGATGTGCGGGTAAACGATCTGTTGACCGGTTGG 158
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 69 GGAAAGTGTTTCTTTGATTCATGGATGGATGTGCTGGTAAACGATCTGTTGACCGGTTGG 128
Query 159 TTGTGCCTCGGAAAGCTACTGGTCTTATCCTGCGTGACAATATGAACAAGACAGATGGTA 218
|||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||||
Sbjct 129 TTGTGCCTCGGAAAGCCAGTGGTCTTACCCTGCGTGAGAATATGAACAAGACAGATGGTA 188
Query 219 AGACTGTTCCTTTCTGCAGCCGAGTTGGTTGTAGTGCAAAGGTAACTTCTACCAAGAGAT 278
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 189 AGAATGTTCCTTTCTGCAGCCGAGTTGGTTGTACTGCAAAGGTAACTTCTACCAAGAGAT 248
Query 279 CCCGGATTGGCTCTACGGACAACAATTCAAAAGTTGCTCTGCCTCCGGTTCCCTCTTCCT 338
| ||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||| |||
Sbjct 249 CTCGGATTGGCTCTACGGATAACAATACAAAAGTTGGTCTGCCTCCGGTTCCATCTACCT 308
Query 339 CACATGGAAAGGAAATTGTTGGGAGTTCATCTCGAACTCCTGGTGGATTTGGATACTTAA 398
| || ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 309 TAAATAGAAAGGAAATTGTTGGGAGCTCATCTCGTACTCCTGGTGGATTTGGATACTTGA 368
Query 399 GAAAGACAGCCAAAGTTACTCCCAGAAGAAAGCCGTCATCTAGTTTAGACACAGAATCTT 458
||||| |||||||||||||| | |||||| |||||||||||||||||||||| |||||||
Sbjct 369 GAAAGCCAGCCAAAGTTACTGCAAGAAGACAGCCGTCATCTAGTTTAGACACTGAATCTT 428
Query 459 CGGAAAAGACTAGTATTCATTATGATCCAGCTGCAACAGAGCCTACACTTCCACGCCAAA 518
|||||| || | |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 429 CGGAAACGAGTTGTATTCATGATGATCCAGCTGCAACAGAGCCCACACTTCCACGCCAAA 488
Query 519 AGACTAAAAGAGGCACAATCAATGTTCATCCTCAAAGCGCTTTCTCTGGAGAAGTCGTGT 578
|||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 489 AGACTAAAAGAGTCACAATCAATGTTCATCCTCAAAGCGCTGTCTCTAGAGAAGTTGTAA 548
Query 579 TGACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAAGTAGTCAT-CAGAAGTCTGAA 637
| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 549 TAACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAATTAGTCATCCA-AAGTCTGAA 607
Query 638 TTGGGCACCCGAGATACTCTGACGGGTCCTTCTGTTTCTACATCTTCTGATAACAGCGAG 697
||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 608 TTGGGTACCCGCGATGCTCTGACGGGTCCTTCTGTTTCTACATCTTCTGGTAACAGTGAG 667
Query 698 CACACTGTAAGAGGCGGTTTGAGCAGGAATAGATTGAGGAACTTGAGGTGCAATTCTGTG 757
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 668 CACACTGTAAGAGGCGGTTTGAGTAGGCATAGATTGAGGAACTTGAGCTGCAATTCTGTG 727
Query 758 TCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAAAAATCAGTGTGACTAAAAAGAAG 817
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAAAAATCAGTGTGACTAAAAAGAA- 786
Query 818 AAAAACTCTGATGGAGAGAGCAGCTCCTCTAGCAAAGGCAGTAAGACTTGTGTGTTGGTA 877
||| | |||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 787 AAA--CGCTGATGGAGAGAGCAGCTTATCTAGCAAAGGTAGTAAGACTAGTGTGTTGGTT 844
Query 878 CCAAAGGTAAGGAGTCAAATTTCTTCTCATGGCAATGGCATCACAGTTTCTGATAACAGA 937
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 845 CCAAAGGTAAGGAATCAAATTTCTTCTCATGGCAATGGCGTCACAGTTTCTGATAACAGA 904
Query 938 AGAAATCGAATAGTACCAAGTATTAGGGACAGCAGT---GTTGGTTCAGGTGGTGGTAGG 994
||||||||| |||||||||||||||||||||||||| |||| |||| |||| |||||
Sbjct 905 AGAAATCGAGTAGTACCAAGTATTAGGGACAGCAGTACTGTTGTTTCAAATGGTTGTAGG 964
Query 995 AGATCTGGTTATATTGGTAGATCAGAGCAACTTGGAGCTGTTGCATCCTCTGCTACTTCT 1054
||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 965 AGAGCTGGTTATTTTGGTAGATCAGAGCGACTTGGAGCTACTGCATCCTCTGCTACTTCT 1024
Query 1055 CGACAAATGCCTCACCCTGCAACACCAACTGATCCCAATCCTTCTCTTTCGTTTTTTCCA 1114
|||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1025 CGACAAATGCCTCATCCTACAACACCAACCGATCCCAATCCTTCTCTTTCGTTTTGTCCA 1084
Query 1115 TCAGATAGATACAGTAGGCCAAACAGTAGTACTGGACGTGTACATAGCACGATGCCTGGT 1174
||| ||| || || | | ||||||||||||| |||||||||| |||||||||
Sbjct 1085 TCAAATA--TA---TA--C-A----GTAGTACTGGACGCGTACATAGCAATATGCCTGGT 1132
Query 1175 AGCCCCACGGAAGCTGACCCTTCAAACTCTTTGGTGAACCGGGATGGTTTGAGTCACTAC 1234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1133 AGCCCCACGGAAGCTGACCCTTCAAGCTCTTTGGTGAACCGGGATGGTTTGAGTCACTAC 1192
Query 1235 AACATGAATGGTATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAG 1294
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AACATGAATGGAATTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAG 1252
Query 1295 CTTACATATGAGCAACTGGCTTCTTTGGAGACCAATCTATTCTCAAGTGGTATGTTCAGA 1354
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1253 CTTACATATGAGCAACTGGCTTCTATAGAGACCAATCTATTCTCAAGTGGTATGTTCAGA 1312
Query 1355 TTCTACGATCAGCATAGAGATATGAGGCTTGACATTGATAACATGTCATATGAGGAACTA 1414
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1313 TTCTATGATCAGCATAGAGATATGAGGCTTGACATCGATAACATGTCATATGAGGAGTTA 1372
Query 1415 CTAGCTTTGGGGGAGAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCACTCTCG 1474
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CTAGCTTTGGGGGATAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCACTCTCA 1432
Query 1475 AGAAGCCTCAAGCAAAGCACTTATCAGAAGACAGATGAAACCGGTTCCATTTCTCTG-AG 1533
|||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||| |
Sbjct 1433 AGAAGCCTTAAGCAAAGCATTTATCAGGAGACAGATGAAACCGGTTCCATCTCTCTGTA- 1491
Query 1534 TAAGGAAGATGATGTCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGT 1593
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1492 TAAGGATGATGATATCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAATT 1551
Query 1594 AGGGACTATGCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGTTGCGGAT 1653
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1552 AGGGACTATTCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGCTGCGGAT 1611
Query 1654 GAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAAGAGGAGAAATC-ATTTTAGTGAA 1712
||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct 1612 GAAGAATTGGTGCCCAATCTGCAAAACCTCTGCGGAAGAAGAGAAGTCGATTT-AGTGAA 1670
Query 1713 TAATGCCAACACCAGTTTTAGGTTTGTGGGATGACTCCAAGATGATGCAGATACATTGCT 1772
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1671 TAATGCCAACAGCAGTTTTAGCTTTGTGGGATGATTCCAAGATGATGCAGATACATTGCT 1730
Query 1773 -TTTGTCTTCACAAAGTGCTTGTCTCTACATCATCTTGctctctctctctctTTTCTTTT 1831
||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1731 ATTT-TCTTCACCAAGTGCTTGTCTCTACATCATCTTGCTCTCTCT-TCTCTTTTCTTTT 1788
Query 1832 GTACATATAACAATATCTTTCTTTTGACCCAATTGGGTACAAATGGGTAAATAAGATCAG 1891
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1789 GTACATATAACAGTATCTTTCTTTTGACCTAATTGGGTACAAATGGGTAAATAAGATCAG 1848
Query 1892 GTGACCATATCCTTCTCTTTCTGTATTAAAAGCTCAACTTTTGATTTAAACCTGAAACAT 1951
|||||||| | |||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1849 GTGACCATTTTCTTCTCCTTCTGTATTAAAAGCTCGACTTT-GATTTGAACCTGAAACAT 1907
Query 1952 TTTTTGGTTTATAC 1965
|||||||||||||
Sbjct 1908 GTTTTGGTTTATAC 1921
> AT5G24870.1 | Symbols: | RING/U-box superfamily protein | chr5:8544785-8547789
REVERSE LENGTH=2086
Length=2086
Score = 531 bits (287), Expect = 1e-149
Identities = 1181/1590 (74%), Gaps = 152/1590 (10%)
Strand=Plus/Plus
Query 162 TGCCTCGGAAAGCTACTGGTCTTATCCTGCGTGACAATATGAACAAGACAGATGGTAAGA 221
|||| |||||||| | ||||||| | | | ||| |||||||| |||| ||||| |||||
Sbjct 341 TGCCACGGAAAGCAAGTGGTCTTGTGTTACATGAGAATATGAAGAAGAAAGATGATAAGA 400
Query 222 CTG-T-T-CCTTTCTGCAGCCGAGTTGGTTGTAGTGCAAAGGTAACTTCTACCAAGAGAT 278
|| | | ||| ||||||| || ||||||| ||| | | ||| | ||| || ||| ||
Sbjct 401 GTGTTGTCCCTATCTGCAGTAGAATTGGTTGCAGTTCCAGGGTTAGTTCCACTAAGGGA- 459
Query 279 CCCGGATTGGCTCTACGGA-CAACAATTCAAAAGTTGCTCTGCCTCCGGTTCCCTCTTCC 337
|||| | | | || | | || |||||| | || || || || ||| || |||
Sbjct 460 ----GATTTGAT-T---GATC-ATAAAGCAAAAGCTACTGTGTCTTCGTTTCGATC-TCC 509
Query 338 TCACA-TGGAAAGGAAATTGTTGGGAGTTCATCTCGAACTCCTG-GTGGATTT-G-GATA 393
| | ||||||||||| ||||| ||||||||||||| | || |||||||| | | ||
Sbjct 510 TTTGAGTGGAAAGGAAACCGTTGGTAGTTCATCTCGAAGT-ATGAGTGGATTTGGTGGTA 568
Query 394 CTTAAGAAAGACAGCCAAAGTTACTCCCAGAAGA-AAGC-CGTCATCTAGTTTAGACACA 451
| || |||| | |||| |||| | || ||| || | | || ||| ||| ||||
Sbjct 569 C--AAAAAAGGCTTCCAAGGTTATTGGTAGGAGACAA-CTC-TCTTCTCTTTTGGACATG 624
Query 452 GAATCTTC-G-GAAAAGACTAGTATTCATTATGATC-CAGCTGCAACAGAGCCTACACTT 508
|| ||||| | || || | ||| || || | || | || | ||| |||| | | |||
Sbjct 625 GATTCTTCAGAGAGCAG-C-AGTGTTAATGAAGA-CTCACCCACAAGTGAGCGTTCCCTT 681
Query 509 CCACGCCAAAAGACTAAAAG-AGGCACAATCAATGTTCATCCTCAAAG-CGCTTTCTCTG 566
|| || |||||| ||||| | |||| || | ||||||| || |||| | | ||||||
Sbjct 682 CCTCGTGGAAAGAC-AAAAGAAAGCACTATTAGTGTTCATTCTGAAAGTAG-TGTCTCTG 739
Query 567 GAGAAGTCGTGTTGACAAAGGCAGGAAGCTCAAGTAGAGGAACCAGCAGAAGTAGTCATC 626
||||||| || ||||| ||||||||||||| ||||||||||| | ||||| | |||||
Sbjct 740 GAGAAGT--TG-TGACAGAGGCAGGAAGCTCGAGTAGAGGAACTGGTAGAAGCATTCATC 796
Query 627 AGAAG-TCTGAATTGGGCACCCGAGATACTCTGACGGGTCCTTCTGTTTCTACATCTTCT 685
|| || |||| |||| | |||||| | | | | || | | | |
Sbjct 797 AG-AGACCTGATTTGGTCTCCCGAG--A---T-----G--C-TC-G--TGT-GA------ 832
Query 686 GATAACAGCGAGCACACTGTAAGAGGC-GGTTTGAGCAGGAATAGATTGAGGA-ACTTGA 743
| ||| || ||||| | || |||| || || ||| || |||| |||| | || ||||||
Sbjct 833 G-TAATAGTGAGCAAAATGCAAGA-GCTAGTGTGAACAAGAATGGATT-AAGAGACTTGA 889
Query 744 GGTGCAATTCT-GTGTCTGATGTTCTTCCAACTAACTCAAACTCAGCAACAA-AAATCAG 801
|| ||| ||| || ||||||||||||||| |||| || ||||| | |||| ||| ||
Sbjct 890 GGAACAAATCTGGT-TCTGATGTTCTTCCATCTAATTC-AACTC--CGACAAGAAA-AAG 944
Query 802 TGTGA-CTAAAAAGAAGAAAAACTCTGATGGAGAGAGCAGCTCCTCTAGCAAAGGCAGTA 860
| | || | | ||||||| ||||||||| ||||||||||| || || | ||| | ||
Sbjct 945 TAACATCTTTAGA-AAGAAAACCTCTGATGGTGAGAGCAGCTCTTCGAGTAGAGGGAATA 1003
Query 861 AGACTTGTGTGTTGGTACCAAAGGTAAGGAGTCA-AAT-TT-CTT---CTCATGGCAATG 914
|||| | | || | || ||| || | | ||| || || |||| || ||||
Sbjct 1004 AGAC----G-GAAGG-ATCAGTGGTTGGGGGAAAGAATATTAGTTCCCCTCAGGGGAATG 1057
Query 915 GCATCA-CAGTTTCTGATAAC-AGAAGAAATC-GAATA-GTACCAAGTATTAGGGACAGC 970
|||||| || | ||||| | | || || || | ||| | |||||||| ||||||||| |
Sbjct 1058 GCATCACCA-TGTCTGA-ACCTAGGAGGAA-CAGAA-ACTTACCAAGTGTTAGGGACAAC 1113
Query 971 AGTGTTGGTTCAGGTGGTGGTAGGAGAT---CTGGTTA-TATTGGTAGATCA-GAGC-AA 1024
||||||| |||| || || |||||||| ||||||| || ||||||| || || |
Sbjct 1114 AGTGTTGTTTCAAGTAGTACTAGGAGATCAACTGGTTATTA-TGGTAGAACAGGA-CGTG 1171
Query 1025 CTTGGAGCTGTTGCATC-CT-C-TGCTA-CT---TCT-CGACAA-ATGCCTCACCCTGCA 1075
| |||||| |||||| | || | || | || || | |||| | | || | || ||
Sbjct 1172 C-TGGAGCGGTTGCAACACTACAAGC-ACCTCGGCCTCCAACAAGA-G-CTGA-TCT-CA 1225
Query 1076 ACACCAACT-GATC-CCA-ATCCTTCTCTTTCGTTTTTTCCATCAGATAGATACAGTAGG 1132
| || || |||| || | |||| | | || ||| | | |||| |||||||||
Sbjct 1226 A-TCCTTCTAGATCGGCAGAAGCTTCGC-GTAGTCCTTT--A--A-ATAGTTACAGTAGG 1278
Query 1133 CCAAACAGTAGTACTGG-ACGTGTACATAG-C--ACGATGCCTGGTAGCCCCACGGAAGC 1188
|||| |||||||| ||| | || ||| ||| | | |||||||||||||||| | |||||
Sbjct 1279 CCAATCAGTAGTAATGGCAGGT-TACGTAGCCTGATGATGCCTGGTAGCCCCTCAGAAGC 1337
Query 1189 TGACCCTTCAAACTCTTTGGTGAACCGGGATGGTTTGAGTCACTACAACATGAATGGTA- 1247
| || ||| ||||||| ||||||| ||| ||| || | || ||||||||||| |
Sbjct 1338 CGGCCTTTCTCGCTCTTTGATGAACCGTGATACTTTCAGACGGTATAACATGAATGG-AG 1396
Query 1248 TTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAACATGATGAAGAGCTTACATATGAGC 1307
|||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 1397 TTGCAGAGGTATTGTTGGCCCTGGAAAGGATTGAGCAAGACGAAGAGCTTACATACGAGC 1456
Query 1308 AACTGGCT-TCTTTGGAGACCAATCTATTCTCAAGTGGTATGTTCAGATTCTACGATCAG 1366
|| ||||| | ||| ||||||||||| |||| || ||||||| ||| ||| ||||||||
Sbjct 1457 AATTGGCTGT-TTTAGAGACCAATCTGTTCTTAAATGGTATGAGCAGCTTCCACGATCAG 1515
Query 1367 CATAGAGATATGAGGCTTGACATTGATAACATGTCATATGAGGAACTACTAGCTTTGGGG 1426
|||||||||||||||||||||||||| |||||||| ||||||||||| |||| || | |
Sbjct 1516 CATAGAGATATGAGGCTTGACATTGACAACATGTCGTATGAGGAACTGTTAGCATTAGAG 1575
Query 1427 GAGAAAATGGGTACAGTGAGCACAGCTCTAAGCGAAGAAGCAC-TCTCGAGAAGCCTCAA 1485
||||||||||||||||||||||| ||||||||||||||||| | ||| || |||||||||
Sbjct 1576 GAGAAAATGGGTACAGTGAGCACTGCTCTAAGCGAAGAAGCGCTTCT-GAAAAGCCTCAA 1634
Query 1486 G-CAAAGCACTTATCAG---AAGACAGATGAAACCGGTTCCATTT-CTCTGAGTAAGGAA 1540
| | ||| | ||| | | || || |||||| ||| ||||| | |||| || ||
Sbjct 1635 GTC-AAGTATTTA-CCGTCCAA-AC-GATGAATCCGACGACATTTGC-CTGAACAAAGAT 1689
Query 1541 GATGATGTCAAGTGCAGTATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGTAGGGACT 1600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 GATGATGTCAAGTGCAGCATTTGCCAGGAAGAGTATGTTGATGGAGATGAAGTAGGGACT 1749
Query 1601 ATGCCATGTCAACATATGTACCATGTGAGCTGTGTACAACAATGGTTGCGGATGAAGAAT 1660
|||| || ||||||| ||||| |||||||| | ||||||||| | ||||||||||||
Sbjct 1750 TTGCCTTGCCAACATAAATACCACGTGAGCTGCGCGCAACAATGGCTACGGATGAAGAAT 1809
Query 1661 TGGTGCCCAATCTGCAAAACCTCTGCGGAA 1690
||||| || || || ||||||||||| |||
Sbjct 1810 TGGTGTCCTATATGTAAAACCTCTGCAGAA 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5