BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487918
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10860.1 | Symbols: | Cystathionine beta-synthase (CBS) fam... 1408 0.0
> AT5G10860.1 | Symbols: | Cystathionine beta-synthase (CBS) family
protein | chr5:3428891-3430470 REVERSE LENGTH=1025
Length=1025
Score = 1408 bits (762), Expect = 0.0
Identities = 869/919 (95%), Gaps = 13/919 (1%)
Strand=Plus/Plus
Query 1 AAGCTCAACTACGATCTGTTCTTCTTCTCTAATCTCAGGTGAAAGATGCAAGCTGTGGTT 60
|||||| |||||||||| |||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 78 AAGCTCCACTACGATCTCTTCTTCTTCTCTAATCTCAGTTGAAAGATGCAAGGTGTGATT 137
Query 61 AGATCCTTGGTCTCCGGTGGAAATGTTGTGAAA-GCTTCTGTGCTGCAACATCTCCGTGT 119
||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 138 CGATCCTTCGTCTCCGGTGGAAATGTTGTGAAAGGC-TCTGTGCTGCAACATCTCCGTGT 196
Query 120 GATTAACCCGGCGATTCAGCCTTCTGTGTTTTGTTCTCGCTCTGAGTCTACTCAACCTGC 179
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 197 GATTAACCCGGCGATTCAGCCTTCTGTGTTTTGTTCACGCTCTGAATCAACTCAACCTGC 256
Query 180 TCGTATGGAGGAAACTGGATTCGAGAGCACAACTATTTCCGATGTCATGAAATCCAAAGG 239
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 ACGTATGGAGGAATCTGGATTCGAGAGCACAACTATTTCCGATGTCATGAAATCCAAAGG 316
Query 240 CAAAAGTGCTGATGGATCTTGGCTTTGGTGTACTACTGATGACACTGTTTATGATGCTGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CAAAAGTGCTGATGGATCTTGGCTTTGGTGTACTACTGATGACACTGTTTATGATGCTGT 376
Query 300 TAAATCCATGACACAACACAATGTTGGTGCCTTGGTGGTTGTGAAACCTGGTGAGCAACA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TAAATCCATGACACAACACAATGTTGGTGCCTTGGTGGTTGTGAAACCTGGTGAGCAACA 436
Query 360 AGCTCTTGCTGGTATCATTACTGAGAGAGATTACCTACGGAAGATTATAGTGCAAGGGAG 419
||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||
Sbjct 437 AGCTCTTGCTGGTATCATTACAGAGAGAGATTATCTACGGAAGATCATTGTGCAAGGGAG 496
Query 420 ATCATCCAAATCTACAAAAGTTGGAGACATTATGACTGAAGAGAACAAGCTTATCACTGT 479
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 497 ATCATCCAAATCAACAAAAGTTGGAGACATTATGACTGAAGAGAATAAGCTTATCACTGT 556
Query 480 GACACCGGAGACCAAGGTCTTGCGTGCTATGCAACTGATGACAGATAACCGAATCAGGCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GACACCGGAGACCAAGGTCTTGCGTGCTATGCAACTGATGACAGATAACCGAATCAGGCA 616
Query 540 TATTCCGGTAATCAAAGACAAGGGCATGATCGGAATGGTGTCCATAGGAGACGTGGTCCG 599
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 617 TATTCCGGTAATCAAAGACAAGGGCATGATTGGAATGGTGTCCATAGGAGATGTTGTCCG 676
Query 600 TGCAGTGGTTCATGAGCATCGAGAGGAGCTTCAACGCCTAAATGCGTTTATTCAGGGAGG 659
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 677 TGCAGTGGTTCATGAGCATAGAGAGGAGCTTCAACGCCTAAATGCGTATATTCAGGGAGG 736
Query 660 TTACTAGATCTTGAAGATTGGTAAGATAAGAGTTCCCTGTTGTGTC-T--GGTCTTGTGC 716
||||||||||||||| | ||| |||| ||||||||||||||||||| | ||||||||||
Sbjct 737 TTACTAGATCTTGAATAATGGAAAGAAAAGAGTTCCCTGTTGTGTCGTCTGGTCTTGTGC 796
Query 717 TGCTGAATTTGAAAAGCTTTTAGATCAGTGTAAATATGCAGTCCTCgttgttgttgttgt 776
|||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 797 TGCTGAATCTGAAAAGCTTCCAGATCAGTGTAAATATGCAGTCCTCGTTGTTATTGTTGT 856
Query 777 tgttgttgttgtgttatgtttgatgttttgtgttgtttcgttgtttAACTTGTCAAAACT 836
||||||||| || || | ||||||||||||||||||||||||||||||||||||||
Sbjct 857 TGTTGTTGT-GT-TT--G----ATGTTTTGTGTTGTTTCGTTGTTTAACTTGTCAAAACT 908
Query 837 AAGGCCTTGTGCTTCTCCTTTTCTTGCGCTTACTTTGCAAGAGAATAAAACCAAAGACTC 896
||||||||||||| || || ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 909 AAGGCCTTGTGCTGCTTCTCTTCTTGCGCTTACTTAGCAAGAGAATAAAACCAAAAACTC 968
Query 897 TGATCTCGTTATGAAAGAT 915
||||||| |||||||||||
Sbjct 969 TGATCTCTTTATGAAAGAT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5