BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487938 Length=1693 Score E Sequences producing significant alignments: (Bits) Value AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | ... 2145 0.0 AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | ... 942 0.0 > AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | chr5:3510118-3513305 FORWARD LENGTH=1810 Length=1810 Score = 2145 bits (1161), Expect = 0.0 Identities = 1433/1554 (92%), Gaps = 60/1554 (4%) Strand=Plus/Plus Query 173 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCACTTCACCGACCAACAACAACA 232 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 281 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACA 340 Query 233 CCAGCCTTCTCCTCCTCCGCCACCGTCACAGCAGCAACAACAACAACATTTTCATGAATC 292 ||| | ||||||||||| ||| || | ||||| || |||||||||||||| ||||| Sbjct 341 TCAG-C--CTCCTCCTCCG---CCG-CA-A-CAGCAGCAGCAACAACATTTTCAAGAATC 391 Query 293 AGCTCCGCCTAATTGGCTCCTCCGCTCCGATAACAA-TT--TC---CT-CA-AC--CT-C 341 ||| || ||||||||||||||||||||||| ||||| || || || || || || | Sbjct 392 AGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGC 451 Query 342 CAC-ACCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 400 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 452 CTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 511 Query 401 ACGATCCTCATCCTTCCTCCAACGCGGCGGAACA--GC--A-AACAACAACAACGAAACA 455 |||||||||||||||||||||||| ||| |||| || | |||||||||||||||||| Sbjct 512 ACGATCCTCATCCTTCCTCCAACGAGGC--AACACCGCAAACAACAACAACAACGAAACA 569 Query 456 TCCGGTGACGTCATCGAAGACG-TCGCCGGCGGAGAGGAGTCAACGATCGGAGAGAAGAA 514 |||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| Sbjct 570 TCCGGTGACGTCATCGAAGACGTTC-CCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAA 628 Query 515 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTA 574 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 629 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATA 688 Query 575 CGAGCAGCTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 634 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 CGAGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 748 Query 635 TCCGAGGATTGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTT 694 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 749 TCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTT 808 Query 695 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 754 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 809 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 868 Query 755 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGC 814 |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 869 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGC 928 Query 815 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGT 874 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 929 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGT 988 Query 875 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 989 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 1048 Query 935 TGATGCTCCTTTGTTTGATGGAAGCTTAGATGGTTTAGGGTTTGGTCCTCTAGTTCCCAC 994 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1049 TGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCAC 1108 Query 995 TGAGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCA 1054 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1109 TGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCA 1168 Query 1055 GGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1114 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1169 GGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1228 Query 1115 AAAATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTG 1174 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1229 AAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTG 1288 Query 1175 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAA 1234 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1289 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAA 1348 Query 1235 ACAGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTC 1294 |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 1349 ACAGATAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTC 1408 Query 1295 TTCTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354 |||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| || Sbjct 1409 TTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCG 1468 Query 1355 TTGAGGTCACTTTGAAGCTCGCATGGAGAGATCCAAAAGCTTAATAGAAAATTGGAGACA 1414 ||||| ||| | ||| ||||| |||||||||||||||| ||||||| ||||| || Sbjct 1469 TTGAGATCA-----A-GCTTGCATGTAGAGATCCAAAAGCTTTATAGAAAGGTGGAGGCA 1522 Query 1415 TCATGAAGACAA-GAATTCTTACACAACAAACTTAGAACGTAATTTTTGTGTCATTACAT 1473 | |||||||| ||||||||||||||||||| ||| |||||||||| ||| || ||||| Sbjct 1523 T---GAAGACAAAGAATTCTTACACAACAAACGTAGGACGTAATTTT-GTGCCAGTACAT 1578 Query 1474 GGTATGACTTCCATAGTTCGTAATGATTAGGGA-ACACACCA--AG-CCCCAAAGTATGA 1529 |||||| ||| |||| || ||||||||||||| ||||| | | |||||||| |||| Sbjct 1579 GGTATGGCTTTCATATTTGGTAATGATTAGGGCCACACAAAATTAAACCCCAAAGCATGA 1638 Query 1530 TTTGTAATATGAGGTTTTAGATGGACTACTTTATGATAGGATCGTCAGTCGTCG-T-C-A 1586 ||||||||||||||||||||||||||| || |||||||||||||||||| || | | | Sbjct 1639 TTTGTAATATGAGGTTTTAGATGGACT--TT-ATGATAGGATCGTCAGTCTTCACTGCCA 1695 Query 1587 -CTGCCAT-CTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAGATTTCTCG 1644 || |||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1696 TCT-CCATTCTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAAATTTCTCG 1754 Query 1645 TTATAGCATTT-----GTGCAATCATTGGCCGTAATCTACACAAATATGCATAT 1693 |||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1755 TTAT-GCATTTAATTTGTGCAATCATTGGCCGTAATCTACACAAATATACATAT 1807 Score = 285 bits (154), Expect = 9e-76 Identities = 171/178 (96%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 1 AAGAAGAATAAATATAGGAATAAATCGTC-TTTTTGGTGTAAGCTACATATAAAATTCAA 59 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 45 AAGAAGAATAAATATAGGAATAAATCGTCTTTTTTGGTGTAAGCTACATATAAAATTCAA 104 Query 60 A-CGTTC-AA-ACACATACACATCGAAACCCTTATATTTCATTTTCTTTCT-TTTTAAAG 115 | || || || |||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 105 ACCG-TCAAACACACATACACATCGAAACCCTTATATTTCATTTTCTTTCTGTTTTAGAG 163 Query 116 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 164 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 221 > AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | chr5:8736074-8738584 FORWARD LENGTH=1899 Length=1899 Score = 942 bits (510), Expect = 0.0 Identities = 731/838 (87%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 524 GAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTACGAGCAGCT 583 ||| ||||||||||||||||||||||||||||| || || ||||| || ||||||||||| Sbjct 590 GAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCAGCT 649 Query 584 TTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGAT 643 ||||||||| ||||| || || |||| ||||| || ||||| |||||||||||||| || Sbjct 650 TTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT 709 Query 644 TGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTTA---GAAGC 700 || || |||||||||||||| ||| ||||||| ||||| |||||| | ||| | || Sbjct 710 CGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGC 769 Query 701 CGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGT 760 ||||||||| | |||| |||||| || || || |||||||| |||||||| |||||||| Sbjct 770 CGCTCAAGG--T-CTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGT 826 Query 761 ACTATTGCTTTGCTC-TTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGCAATGG 819 | | || || || ||| ||||| ||||||||||| ||||| || ||||||||||||| Sbjct 827 GTTGCTACTGTGTTCATTT-AAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGG 885 Query 820 AAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGTATCTC 879 ||||||| ||||| ||||||||||||||||||||||||||||| || |||||||| |||| Sbjct 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTC 945 Query 880 CTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATG 939 |||| ||||| | ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 946 CTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATG 1005 Query 940 CTCCTTTGTTTGATGGAAGCTTAGATGGT-TTAGGG-TTTGGTCCTCTAG-TTCCCACTG 996 || | |||| ||||| | |||||| || || ||| ||||||||| | | |||| |||| Sbjct 1006 CTAATATGTTCGATGGGGGATTAGAT-GTGTT-GGGTTTTGGTCCT-TTGATTCCTACTG 1062 Query 997 AGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCAGG 1056 |||||||||| || ||||||||| |||| |||||||||||||||||||||||||| |||| Sbjct 1063 AGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGG 1122 Query 1057 GTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAA 1116 |||| |||||||| || || |||||||||||||||||| | ||||||||||||||||| | Sbjct 1123 GTTACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGA 1182 Query 1117 AATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTGGC 1176 | |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 1183 AGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGC 1242 Query 1177 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAAAC 1236 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1243 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAAC 1302 Query 1237 AGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTCTT 1296 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 1303 AGATAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTT 1362 Query 1297 CTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354 | || || | ||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1363 CCACTGTATTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCG 1420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83684308515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5