BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487941
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11090.1 | Symbols: | serine-rich protein-related | chr5:35... 1334 0.0
AT5G25280.1 | Symbols: | serine-rich protein-related | chr5:87... 396 2e-109
> AT5G11090.1 | Symbols: | serine-rich protein-related | chr5:3524680-3525846
FORWARD LENGTH=1167
Length=1167
Score = 1334 bits (722), Expect = 0.0
Identities = 883/953 (93%), Gaps = 41/953 (4%)
Strand=Plus/Plus
Query 1 aaaaaaaTGGTGACTACTTCGTCACGAACCAAGTCAAACGGACCGGTGCTTCGTTCACAA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAAAAATGGTGACTACATCGTCACGAACCAAGTCAAACGGACCGGTGCTTCGTTCACAA 170
Query 61 TCACCGTCGGGTCGATTTTGCGGTGGTTACTCAAGAGCCGTTCCATCGTCTTCTTCATCA 120
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 171 TCACCGTCAGGTCGATTTTGCGGTGGTTACTCAAGAGCCGTTCCGTCATCTTCTTCATCA 230
Query 121 GCTTTCGCTTCATCAACGAGTTCTAGCTTTTCGTCTCCGTCATCAGCTTTTTTCAGCAAT 180
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 231 GCTTTCGCTTCATCAACGAGTTCTAGCTTTTCATCTCCGTCGTCAGCTTTTTTCAGCAAT 290
Query 181 CACCGTCACCACGAGAACAACCAGAGTCATCACCGATCTGCGTCACCGACTCGTGTGAAT 240
|||||||| ||||||| ||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 291 CACCGTCATCACGAGAGCAATCACAGTCACCACCGATCTGCGTCACCGACTCGTGTGAAT 350
Query 241 CTCTACACAGCGCAACCGATGTCTCAGTCGTTTCGATATTCTCTCGATAGCAGATCTATA 300
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 351 CTCTACACAGCGCAACCGATGTCTCAGTCGTTTCGTTACTCTCTCGATAGCAGATCTATA 410
Query 301 TCTCCGACTAACAAATCGATCTCCGTATCGAAGAATCAGCCACCGAGCCACCACCACAGT 360
|||||||||||||||||||||||||| |||||||||||||||||||| ||| | | |
Sbjct 411 TCTCCGACTAACAAATCGATCTCCGTTTCGAAGAATCAGCCACCGAG---CCA-TA-A-T 464
Query 361 CACAAGATCTCAGAAACGAGAAGGAGATGTATGTGTTCTCCGACGACGCATCCAGGATCT 420
|||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CACAAGATCT------C---AAGGAGATGTATGTGTTCTCCGACGACGCATCCAGGATCT 515
Query 421 TTCAGATGTAGTCTACACAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTTCGTAT 480
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TTCAGATGCAGTCTACATAAGAACGTAGCGAATCCACATGGTCAAGGTACAGCTTCGTAT 575
Query 481 ACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAATCGGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 576 ACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTAATTCGCTGGTGAGAATTGGT 635
Query 541 GGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACGACTTTGATTCGACCTTCTTCGCAT 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 636 GGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACTACTTTGATTCGACCTTCTTCGCAT 695
Query 601 CATTTGAAAAGACGAGCTGCTTATCAGCCTCGTCCTAGTCGGCTCTCAATCATGGCCAAA 660
||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 696 CATCTGAAAAGACGAGCTGCTTATCAGCCACGTCCTAGTCGACTCTCAATCATGGCGAAA 755
Query 661 GCTGATGATGGGAATTGATTT-GATCTGGATTTTTGG--AATTCAGGTTTGTTTTGTTTG 717
|||||||| | ||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 756 GCTGATGA-G--AATTGATTTTGATCTGGATTTT-GGTTAATTCAGGTTTGTTTTGTTTG 811
Query 718 TTGTTCTTCTTCTCTTAAAA-GAAA-CCACCACAGGATT-AGTAGATCCGGCGATGAAGT 774
|||||||||| ||||| ||| |||| ||||||||||||| |||||||||||||| |||||
Sbjct 812 TTGTTCTTCT-CTCTTTAAACGAAAACCACCACAGGATTTAGTAGATCCGGCGAAGAAGT 870
Query 775 CCTTGTTATGAAGCTAGGCGAGATCTGCGAAGAA---TCGTCGTCGA-AA-TCGAGATTT 829
| ||||||||||||| | | | ||||||||||| || || |||| || |||||||||
Sbjct 871 C-TTGTTATGAAGCT-GA-G-G-TCTGCGAAGAAGAATCATCCTCGAGAAATCGAGATTT 925
Query 830 TGTAAAACGAAGAAACACACACC-ATCATAATTTTTGTTGTTGTTGGGTGAA-GAAGATG 887
||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |||||||
Sbjct 926 TGTAAAAGGAAGAAACACACACCTATCATAATTTTT-TTGTTGTTGGGTGAAAGAAGATG 984
Query 888 CTAGAATGCATTGTACATAC-TTCTCTTTTT-ACTGTTTTTGTTGCTCTCTCT 938
|||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 985 CTAGAATGCATTGTACATACGTTCTCTTTTTTACTGTTTTTGTTGCTCTCTCT 1037
Score = 86.1 bits (46), Expect = 6e-16
Identities = 67/76 (88%), Gaps = 5/76 (7%)
Strand=Plus/Plus
Query 939 aaaaaaaaaaaaTGTTCGGAGTCACACCAAA--TTACAT-C-TAAAATCGAAAATCAAAG 994
||||||||||||||||||||||| ||||||| ||| | | ||||||||||||||||||
Sbjct 1058 AAAAAAAAAAAATGTTCGGAGTCTCACCAAAAATTAGAGACCTAAAATCGAAAATCAAAG 1117
Query 995 AACTGAATCCAAATTT 1010
||||||||| || |||
Sbjct 1118 AACTGAATCTAA-TTT 1132
> AT5G25280.1 | Symbols: | serine-rich protein-related | chr5:8773789-8775487
FORWARD LENGTH=1699
Length=1699
Score = 396 bits (214), Expect = 2e-109
Identities = 541/691 (78%), Gaps = 54/691 (8%)
Strand=Plus/Plus
Query 3 aaaaaTGGTGACTACTTCGTC-ACGAACCA--AG-TCAAACGGA-CCG-GT-GCTTCG-T 54
|||||||| || |||||| || | |||||| || ||||||||| | | | ||| || |
Sbjct 90 AAAAATGGCGATTACTTCTTCTA-GAACCACCAGATCAAACGGATCTGCTTCGCTCCGAT 148
Query 55 TCACAATCACCGTCGGGTCGATTTTGCGGTGGTTACTC-AA--G-A-GCCGTTCCATCGT 109
|| |||||||||| |||||||| || || | |||||| || | | |||| | |||| |
Sbjct 149 CCA-AATCACCGTCCGGTCGATTCTGTGGCGTTTACTCAAACCGTATGCCG-T-CATCAT 205
Query 110 CT---TCTTCATCAGCTTTCGCTTCATCAACGAGTTCTAGCTTT-TCGTCTCCGTCAT-C 164
|| || || |||| ||||||||| || || || || || ||| || || ||||| | |
Sbjct 206 CTCCGTCGTCGTCAGGTTTCGCTTCTTCCACAAGCTCAAG-TTTCTCCTCACCGTC-TAC 263
Query 165 AGCTTTTTTCAGCAATCACCGTCACCA-CGAGAACAACCA-GAGTCATCACCGATCTGCG 222
||| |||||||| || | ||| | | |||||||||| | || ||| |||||||
Sbjct 264 AGCGTTTTTCAG----CA--GCCACAATC-AGAACAACCACCA-CCAACACAGATCTGCT 315
Query 223 TCACCGACTCGTGTGAATCTCTACACAGC-GCAACCGATGTCTCAGTCGTTTCGATATTC 281
|| ||||| ||||||||||| | |||| | || |||||| | || |||||||| || ||
Sbjct 316 TCTCCGACGCGTGTGAATCTATTCACATCAGC-TCCGATGACGCAATCGTTTCGTTACTC 374
Query 282 TCTCGATAGCAGATCTATATCTCCGACTAACAAATCGATCTCCGTATCGAAGAATCAGCC 341
|||||| |||||||||||| |||| | | ||| ||| | || || || ||
Sbjct 375 AATCGATAACAGATCTATATCACCGA--ATC-GATCCATCGCTGTTTCTTCCAA-CA--A 428
Query 342 ACCGAGCCACCACCACAGTCACAAGA-TCTCAGAAACGAGAAGGAGATGTATGTGTTCTC 400
||| || || | || |||||||| || | || |||| || ||||||||||| ||||
Sbjct 429 ACCTAG-CA--A--TCA-TCACAAGATTC-CGGATTCGAGGAGAAGATGTATGTGCTCTC 481
Query 401 CGACGACGCATCCAGGATCTTTCAGATGTAGTCTACACAAGAACGTAGCGAATCCACATG 460
|||| |||||||| || || ||| | |||||||||||||||||||| |||||||||||||
Sbjct 482 CGACAACGCATCCTGGTTCATTCCGGTGTAGTCTACACAAGAACGTCGCGAATCCACATG 541
Query 461 GTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACTA 520
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 542 GTCAAGGTACAGCTTCGTATACAACGAATGGATTGAATATGCGTCGATCTGCGATGACGA 601
Query 521 ATTCGCTGGTGAGAATCGGTGGTGTTGAAGGAGAGTGGGTGAGAAGAGCTTTGACGACTT 580
|||| || |||||||| |||||||||||||| || |||||| ||||||||||||| ||||
Sbjct 602 ATTCTCTTGTGAGAATTGGTGGTGTTGAAGGTGAATGGGTGCGAAGAGCTTTGACTACTT 661
Query 581 TGATTCGACCTTCTTCGCATCATTTGAAA-AGACGAGCTGCTTATCAGCCTCGTCCTAGT 639
||||| |||| ||||| ||||| | ||| ||| || |||||||| ||||||||| ||||
Sbjct 662 TGATTAGACCATCTTCACATCAACT-AAAGAGAAGATCTGCTTATGAGCCTCGTCGTAGT 720
Query 640 CGGCTCTCAATC-ATGGCCAAAGCTGATGAT 669
| ||| || || ||| | ||||| || |||
Sbjct 721 AGACTCGCA-TCTATGTCGAAAGCAGAAGAT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5