BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487948 Length=1037 Score E Sequences producing significant alignments: (Bits) Value AT5G11160.1 | Symbols: APT5 | adenine phosphoribosyltransferase... 1280 0.0 > AT5G11160.1 | Symbols: APT5 | adenine phosphoribosyltransferase 5 | chr5:3550520-3552207 FORWARD LENGTH=1051 Length=1051 Score = 1280 bits (693), Expect = 0.0 Identities = 956/1073 (89%), Gaps = 58/1073 (5%) Strand=Plus/Plus Query 1 CAACTGGTGGTGAACAGAGGAACAGAGCGAGACAGAGAC------ACACA-AGAG-AGA- 51 ||||||||||||||||||||||||||||||||||||||| | | | |||| ||| Sbjct 1 CAACTGGTGGTGAACAGAGGAACAGAGCGAGACAGAGACATAGAGAGAGAGAGAGAAGAG 60 Query 52 A-AATATCTGATCTCATTTCATTTCCTCGTTTCCTTCTTCTGCGAGGGAAATTTAATTGT 110 | || |||||||||||||||| || || |||||||||||||||||||||||||| |||| Sbjct 61 AGAAGATCTGATCTCATTTCA-TT--TCATTTCCTTCTTCTGCGAGGGAAATTTATTTGT 117 Query 111 TTTCTACTTTGAA---------A--T-CT-TC-C--Cagagagagaga----gagagaTT 150 || |||||||||| | | || || | ||||||||||| |||||||| Sbjct 118 TTCCTACTTTGAATTCTTCCCCATTTACTCTCTCAAGAGAGAGAGAGAGTGCGAGAGATT 177 Query 151 GATATACACAAGTGAAGACGCTCCTTGACTCTCTCAGAATTGAAATTTCAAAACTTTaga 210 ||| ||||||||||||||||||||| ||||||||||||||| ||||||| | Sbjct 178 AATACACACAAGTGAAGACGCTCCTTAACTCTCTCAGAATTG--------AAACTTT--A 227 Query 211 gagaaagagaagagagagagagagagagaAACGATGTTCGCGGCGGAGAATGGTCTTAAA 270 | | ||| |||||| ||||||||||| ||| |||||| ||||||||||||||||| ||| Sbjct 228 GTG--AGA-AAGAGA-AGAGAGAGAGA-AAA-GATGTTTGCGGCGGAGAATGGTCTCAAA 281 Query 271 GGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGAGTTGTTCCTAATTTCCCCAAG 330 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| Sbjct 282 GGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGGGTTGTCCCTAATTTCCCTAAG 341 Query 331 AAAGGGATTATGTTTCAGGACATAACAACGTTGTTATTGGATCGCAAGGCGTTTAAACAT 390 |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| Sbjct 342 AAAGGGATTATGTTTCAGGACATAACTACGTTGTTACTGGATCACAAGGCGTTTAAACAC 401 Query 391 ACAATTGACATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTT 450 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 ACAATTGATATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTT 461 Query 451 GAAGCAAGAGGCTTCTTGTTCGGTCCCTCCATTGCATTAGCTATCGGCGCAAAGTTTGTC 510 ||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||| || Sbjct 462 GAAGCAAGAGGTTTCTTGTTTGGTCCTTCCATTGCATTAGCCATCGGCGCAAAGTTTATC 521 Query 511 CCTTTGCGTAAACCAGGGAAATTACCAGGGAAAGTGATATCAGAGTCTTATGAGCTCGAG 570 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 522 CCTTTGCGTAAACCAGGAAAATTACCAGGGAAAGTGATATCGGAGTCTTATGAGCTCGAG 581 Query 571 TATGGACATGACCGTTTAGAGATGCATGTGGGTGCCGTTGAGCCACGCGAACGCGTCATT 630 ||||| ||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 582 TATGGGCATGACCGTTTAGAGATGCATGTTGGCGCTGTTGAGCCACGCGAACGCGTCATT 641 Query 631 ATCATCGATGATCTTGTTGCTACGGGCGGCACTCTTTCAGCCGCCATGAGCCTATTGGAA 690 ||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 642 ATCATTGATGATCTTGTTGCTACTGGCGGCACTCTTTCTGCCGCAATGAGCCTATTGGAG 701 Query 691 AGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCCTGCCTGAAGTCAAGGGG 750 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 702 AGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCTTGCCTGAAGTCAAGGGG 761 Query 751 CAACACAAGCTGAAAGGGAAGCCGCTTTATGTGCTGGTGGAGCCTAGTGGATTAGATGAG 810 ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 762 CAACACAAGCTCAAAGGGAAGCCGCTTTATGTGTTGGTGGAGCCTAGTGGATTAGATGAG 821 Query 811 TTCTGTTAGGGTACATATCGGTTAATTCCGGTTCAGtttt-tttCCCCTTCAGAGTTCAT 869 |||||||||| |||||| |||||| ||||||||||||||| |||||| | |||||||||| Sbjct 822 TTCTGTTAGGATACATACCGGTTACTTCCGGTTCAGTTTTCTTTCCC-TGCAGAGTTCAT 880 Query 870 GTTCCTATTC-CAAA-TTTCTAAGGTTCCAACTTCTTGTATTCGTTCTCATTT-TACGTT 926 |||| | || |||| |||||| |||||||||||||||||||||||||| ||| | | | Sbjct 881 GTTCTTTTTTTCAAAATTTCTAGGGTTCCAACTTCTTGTATTCGTTCTCGTTTATT-GAT 939 Query 927 CTCTGTAGATTTTGAATTTTGATGTCTACTTTCCACGGCAGTGGTTGGTAAAAA-CCGGG 985 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | Sbjct 940 CTCTGTAGATTTTGAATTTTGATGTGTACTTTCCACGGCAGTGGTTGGTAAAAAACCGAG 999 Query 986 ATATTCAAAATAGTCTTTACAATTCC-GGATTTGGTAGATTTTCTGATGGATC 1037 ||| | |||| |||||||||| |||| || |||||| || ||||||||||||| Sbjct 1000 ATACTGAAAAGAGTCTTTACATTTCCCGG-TTTGGTGGAATTTCTGATGGATC 1051 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50836956764 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5