BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487960 Length=865 Score E Sequences producing significant alignments: (Bits) Value AT5G11280.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1391 0.0 > AT5G11280.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3597247-3598521 FORWARD LENGTH=878 Length=878 Score = 1391 bits (753), Expect = 0.0 Identities = 828/865 (96%), Gaps = 2/865 (0%) Strand=Plus/Plus Query 1 CTGGTAACAACGGGTCCActctctctttctctgtctctctctctAGATTCGATTTCGTTG 60 |||||||||||||||||||||| | ||||| |||||||||||||||| |||||| ||| Sbjct 6 CTGGTAACAACGGGTCCACTCT-GC-ATCTCTCTCTCTCTCTCTAGATTTGATTTCTTTG 63 Query 61 CGGGCTTGTTAATGGCGAATCCAGGGCAATCAAAGGGATGGATTAAGAAATGGACGTCCA 120 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | Sbjct 64 CGGGCTTGTTAATGGCGAACCCAGGGCAATCAAAGGGATGGATAAAGAAATGGACGTCTA 123 Query 121 TGGCTTCATCGGTTTACTTCGTCTTGATCATATTCCAGATCCCTCTCTTCAGGGTTCCAT 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 124 TGGCTTCATCGGTTTACTTCGTCTTGATCTTATTCCAGATCCCTCTCTTCAGAGTTCCAT 183 Query 181 GTAGATCTGGTATGTGTTCATCTCCGATCCATGTGACATCGTCTCAGTTGATTTCTAGTG 240 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 184 GTAGATCTGGTATGTGTTCATCGCCAATCCATGTGACATCGTCTCAGTTGATTTCTAGTG 243 Query 241 AGATCTTTCCTGTTCCGGTGATTAAGGCTCTCCTATTCCCTGGTGCTGTAGTCAATGGTC 300 ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| | Sbjct 244 AGATCTTTCCTGTTCCGATGATTAAGGCTCTCTTATACCCTGGTGCTGTAGTCAATGGCC 303 Query 301 TTGCCACCAACCTGACCTTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCA 360 |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 TTGCCATCAACATGACATTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCA 363 Query 361 ATGTGAAAGAAGCATCTGCAGTGACCGATCTTCAGCGCCTAGAGGTTCTTGCAGGGAGCT 420 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 364 ATGTGAAAGAAGCTTCTGCAGTGACCGATCTTCAACGCCTAGAGGTTCTTGCAGGGAGCT 423 Query 421 ACTTTTCTGTAGCTGGGGCGTTGGTTGGTTTGCTTAAGCCCGGTAGGATGAGCATGTTTG 480 |||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||| Sbjct 424 ACTTTTCTGTAGCTGGGGCGTTTGTGGGTTTGCTAAAGCCTGGAAGGATGAGCATGTTTG 483 Query 481 GGTCATTGCTACTAGTTTGGGGGCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATA 540 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 484 GGTCATTGCTACTAGTATGGGGTCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATA 543 Query 541 CTGACCCAGCCAAAACCGTTTATGTGTACCCGACCATGGTGCTTGCAATGATCTGCGCTT 600 |||||||||||||||| |||||||||||||| || ||||||||||| ||||||||||||| Sbjct 544 CTGACCCAGCCAAAACTGTTTATGTGTACCCAACTATGGTGCTTGCGATGATCTGCGCTT 603 Query 601 TCTCTATGATAAAGTATGACTTGAAGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTG 660 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 604 TCTCTATGATAAAGTATGACTTGAGGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTG 663 Query 661 CTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGAGTTTTTTGAGACTTAATAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 CTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGAGTTTTTTGAGACTTAATAG 723 Query 721 GGCTTGTGTCCTGTCTTTGTACCAACACCCGGGAAAGGAAAATGTCCCGGAAAATGGCAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 724 GGCTTGTGTCCTGTCTTTGTACCAACACCCGGGAAAGGAAAATGTCCCGGAAAATGGCAT 783 Query 781 TGTCACTGTATTTTACTCTCAGTTACCTTATGTTTCATGAATTGTCTATTTTCTAGGACA 840 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 784 TGTCACTATATTTTGCTCTCAGTTACCTTATGTTTCATGAATTGTCTATTTTCTAGGACA 843 Query 841 CTGCTCAGTAGTCAATATCTTCCAA 865 ||||||||||||||||||||||||| Sbjct 844 CTGCTCAGTAGTCAATATCTTCCAA 868 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42196683480 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5