BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487977
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11420.1 | Symbols: | Protein of unknown function, DUF642 |... 2128 0.0
AT5G25460.1 | Symbols: | Protein of unknown function, DUF642 |... 809 0.0
> AT5G11420.1 | Symbols: | Protein of unknown function, DUF642
| chr5:3644547-3647295 FORWARD LENGTH=1513
Length=1513
Score = 2128 bits (1152), Expect = 0.0
Identities = 1353/1446 (94%), Gaps = 30/1446 (2%)
Strand=Plus/Plus
Query 1 TGCTGGCTCCTCTCCCAATTTCCCATAATTTAGTAAA-A-C-CTGTCTCTAGTCTCTTCT 57
|||||||||||||||||||||||||||||||| |||| | | || | |||||||||||||
Sbjct 31 TGCTGGCTCCTCTCCCAATTTCCCATAATTTACTAAATATCACT-T-TCTAGTCTCTTCT 88
Query 58 CTTTACTTTGGTCGTTCACAATGAAAGGAGGCAGCCTCTCGTTTCTCCTCGTTCTCCTAA 117
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 89 CTTTACTTTGGTCGTCCACAATGAAAGGAGGCAGCCTCTCGTTTCTCTTCGTTCTCCTAA 148
Query 118 TCGCCACCATCACTTCCGTCCTCTGCTTCAGCGACGGGATGTTACCGAACGGTGACTTTG 177
|||||||||||||||||||| | |||||||| |||||||||||||| ||||| |||||||
Sbjct 149 TCGCCACCATCACTTCCGTCATTTGCTTCAGTGACGGGATGTTACCAAACGGCGACTTTG 208
Query 178 AGCTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAACGCGATTC 237
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 209 AACTAGGACCAAAACCATCGGACATGAAAGGAACGCAAGTAATAAACAAGAAGGCGATTC 268
Query 238 CTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CTAGCTGGGAGCTTTCAGGCTTCGTCGAATACATAAAGTCCGGTCAAAAACAAGGAGACA 328
Query 298 TGCTTCTCGTCGTACCGGCAGGAAAATTCGCAATCCGGCTAGGCAACGAGGCATCGATCA 357
|||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 329 TGCTTCTCGTAGTCCCGGCCGGAAAGTTCGCAATCCGGCTAGGCAACGAGGCATCGATCA 388
Query 358 AACAAAGACTTAACGTTACAAAAGGAATGTATTATTCACTCACGTTCAGTGCCGCAAGGA 417
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 389 AACAAAGACTTAACGTTACAAAAGGAATGTATTACTCACTGACGTTCAGTGCCGCAAGGA 448
Query 418 CATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCGGGTGTTATTCCTA 477
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 449 CATGTGCCCAAGACGAACGGCTCAACATATCGGTGGCACCTGACTCAGGCGTTATTCCTA 508
Query 478 TACAGACGGTGTACAGTAGCAGTGGATGGGACCTCTACGCTTGGGCGTTTCAGGCCAAGA 537
|||||||||||||||||||||||||||||||||| ||||| |||||||| || ||| |||
Sbjct 509 TACAGACGGTGTACAGTAGCAGTGGATGGGACCTTTACGCATGGGCGTTCCAAGCCGAGA 568
Query 538 GTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGAC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GTAACGTGGCAGAGATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGAC 628
Query 598 CACTTATTGATGGTGTCGCAATCAAAGCTCTCTACCCTCCTCGACCCACCAATAAGAATA 657
|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 629 CACTCATTGATGGTGTGGCAATCAAAGCTCTATACCCTCCTCGGCCCACCAATAAGAATA 688
Query 658 TATTGAAAAACGGAGGATTTGAAGAAGGTCCCTATGTACTCCCAAACGCAACAACCGGCG 717
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 689 TATTGAAGAACGGAGGATTTGAAGAAGGTCCCTACGTACTCCCAAACGCAACAACCGGCG 748
Query 718 TTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCTGCTTGGATGATCGAAT 777
||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 749 TTCTGGTTCCTCCCTTTATAGAAGATGACCACTCTCCTTTACCCGCGTGGATGGTCGAAT 808
Query 778 CACTCAAAGCCATCAAATACGTTGATGTCGAACATTTCTCGGTCCCACAAGGCCGTCGAG 837
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 809 CACTCAAAGCCATCAAATACGTTGATGTCGAGCATTTCTCGGTCCCACAAGGCCGTCGAG 868
Query 838 CCGTGGAGCTGGTCGCAGGCAAAGAAAGCGCAATCGCTCAGGTGGCTCGGACCGTTGTGG 897
|||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 869 CCGTGGAGCTAGTGGCAGGCAAAGAAAGCGCAATCGCTCAGGTAGCTAGGACCGTTGTGG 928
Query 898 GAAAGACTTACGTGCTCTCGTTTGCGGTTGGAGATGCTAACAACGCTTGCCAAGGATCGA 957
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 929 GAAAAACTTACGTGCTTTCGTTTGCGGTTGGAGATGCTAACAATGCTTGCCAAGGATCGA 988
Query 958 TGATAGTTGAGGCATTTGCGGGAAAAGACACTTTAAAGGTACCTTATGAGTCGCGAGGGA 1017
|| | || |||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 989 TGGTGGTCGAGGCATTTGCGGGAAAAGACACTCTAAAGGTACCTTATGAGTCTCGAGGCA 1048
Query 1018 AAGGAGGATTCAAACGCGCATCTCTGCGGTTTGTGGCGGTTTCGACCCGCACAAGGGTTA 1077
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1049 AAGGAGGGTTCAAACGCGCTTCTCTACGGTTTGTGGCGGTTTCGACCCGCACAAGAGTTA 1108
Query 1078 TGTTTTACAGCACGTTTTACTCGATGAGAAGCGATGATTTCTCGTCGCTGTGTGGGCCCG 1137
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1109 TGTTTTACAGCACATTTTACTCGATGAGAAGCGATGATTTCTCATCACTGTGTGGGCCCG 1168
Query 1138 TGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGACCATTGTTTTATTT 1197
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1169 TGATCGATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGGCCATTGTTTTATTT 1228
Query 1198 -TGAAAGTTGTTCGTATAAGCCAGTGTG-------ATAT------GATTTTCTTAATCTC 1243
| || ||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 1229 CT-AAGGTTCTTCGTATAAGCCAGTGTGGTTTTTTATATAAATATGATTTTCTTAATCTC 1287
Query 1244 TAATGCTTTTGAAATGAGATGAGTAATACTGAAAGGGTGTT-GTGGTGTAGGGTTTTATA 1302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1288 TAATGCTTTTGAAATGAGATGAGTAATACTGAAAGGGTGTTTGTGGTGTAGGGTTTTATA 1347
Query 1303 TAAGGCAGAAAGGTCTTGCTTATATCTATTTTCTTGTATGAGAAGGCTGAAGAAATGTTG 1362
||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1348 TAAGGCAAAAAGGTCTTGCTTATATATATTTTCTTGTATGAGAAGGCTAAAGAAATGTTG 1407
Query 1363 TCtttttttACTATATATATTGGGTTCTTCTTCTAAAGAGA-CTGGGTGATTACGAGAAT 1421
||| ||||||||| | || | |||||||| | | || |||| | |||||||| ||||||
Sbjct 1408 TCTGTTTTTACTA-A-AT-T-GGGTTCTT-T-C-AAGGAGATC-GGGTGATTGTGAGAAT 1459
Query 1422 AAAAAT 1427
||||||
Sbjct 1460 AAAAAT 1465
> AT5G25460.1 | Symbols: | Protein of unknown function, DUF642
| chr5:8863363-8865677 FORWARD LENGTH=1460
Length=1460
Score = 809 bits (438), Expect = 0.0
Identities = 859/1061 (81%), Gaps = 33/1061 (3%)
Strand=Plus/Plus
Query 139 TCTGCTTCAGCGACGGGATGTTACCGAACGGTGACTTTGAGCTAGGACCAAAACCATCGG 198
||| |||| | ||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 138 TCTCCTTCCGTGACGGCATGTTACCAAACGGAGACTTCGAGCTAGGACCAAAACCATCAG 197
Query 199 ACATGAAAGGAAC-GCAAGTAATAAACAAGAAC--GCGATTCCTAGCTGGG-AGCTTTCA 254
||||||||||||| | || || ||||| | ||| || || || | ||||| || | ||
Sbjct 198 ACATGAAAGGAACAG-AAATACTAAAC-A-AACTAGCAATACCAAACTGGGAAG-TCACA 253
Query 255 GGCTTCGTCGAATACA-TAAAGTCCGGTCAAAAACAAGGAGACATGCTTCTCGTCGTACC 313
|| ||||||||||||| |||| || || || ||||||||||||||||||||||| || ||
Sbjct 254 GGATTCGTCGAATACATTAAA-TCAGGACATAAACAAGGAGACATGCTTCTCGTTGTTCC 312
Query 314 GGCAGGAAAATTCGCAATCCGGCTAGGCAACGAGGCATCGATCAAACAAAGACTTAACGT 373
|| || |||||||| | | || || ||||| ||||||||||||||||||||||| ||
Sbjct 313 CGCCGGTAAATTCGCTGTAAGACTTGGGAACGAAGCATCGATCAAACAAAGACTTAAAGT 372
Query 374 TACAAAAGGAATGTATTATTCACTCACGTTCAGTGCCGCAAGGACATGTGCCCAAGACGA 433
|||||||||||||| |||||||| || ||||| || || || ||||| ||||||||
Sbjct 373 GGTTAAAGGAATGTATTACTCACTCACTTTTAGTGCTGCTAGAACTTGTGCACAAGACGA 432
Query 434 -ACGGCTCAACATATCGGTGGCACCTGACTCGGGTGTTATTCCTATACAGACGGTGTACA 492
| | || |||||||| || ||||||||||| ||||| ||||| || |||||||| || |
Sbjct 433 GA-GACTTAACATATCTGTAGCACCTGACTCCGGTGTGATTCCGATTCAGACGGTTTATA 491
Query 493 GTAGCAGTGGATGGGACCTCTACGCTTGGGCGTTTCAGGCCAAGAGTAACGTGGCAG-AG 551
|||| ||||| ||||| | || |||||||||||||| || ||||| | || || | ||
Sbjct 492 GTAGTAGTGGTTGGGATTTATATGCTTGGGCGTTTCAAGCTGAGAGTGATGTTGCTGAAG 551
Query 552 ATCGTGATTCATAATCCTGGTGAGGAGGAAGATCCTGCTTGTGGACCACTTATTGATGGT 611
| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 552 -TTGTGATTCATAATCCTGGTGTTGAGGAAGATCCAGCTTGTGGTCCACTTATTGATGGT 610
Query 612 GTCGCAATCAAAGCTCTCTACCCTCCTCGACCCACCAATAAGAATATATTGAAAAACGGA 671
|| || || | | |||| ||||||||| |||| || |||||||| || ||||||||||||
Sbjct 611 GTTGCTATGAGATCTCTTTACCCTCCTAGACCAACTAATAAGAACATTTTGAAAAACGGA 670
Query 672 GGATTTGAAGAAGGTCCCT-ATGTACT-CCCAAACGCAACAACCGGCGTTCTGGTTCCTC 729
||||||||||||||||| | | ||| | ||| | | ||||| || ||| || | || |
Sbjct 671 GGATTTGAAGAAGGTCCATTA-GTATTACCCGG-CTCGACAACTGGAGTTTTGATCCCAC 728
Query 730 CCTTTATAGAAGATGACCACTCTCCTTTACCTGCTTGGATGATCGAATCACTCAAAGCCA 789
| ||||||||||| ||||||||||||||||||| |||||| | || || ||||||||
Sbjct 729 CGTTTATAGAAGACGACCACTCTCCTTTACCTGGATGGATGGTGGAGTCTCTCAAAGCTG 788
Query 790 TCAAATACGTTGATGTCGAACATTTCTCGGTCCCACAAGGCCGTC-GAGCCGTGGAGCTG 848
|||| ||||| || || ||||||||||| |||||||| || || | |||| | |||||
Sbjct 789 TCAAGTACGTAGACGTTGAACATTTCTCAGTCCCACAGGGTCG-CAGAGCTATTGAGCTT 847
Query 849 GTCGCAGGCAAAGAAAGCGCAATCGCTCAGGTGGCTCGGACCGTTGT-GGGAAAGACTTA 907
|| || || ||||| || || |||||||| |||| |||||| || | ||||| ||||||
Sbjct 848 GTAGCGGGTAAAGAGAGTGCCATCGCTCAAGTGGTTCGGACTGTCATTGGGAA-GACTTA 906
Query 908 CGTGCTCTCGTTTGCGGTTGGAGATGCTAACAACGCTTGCCAAGGATCGATGATAGTTGA 967
|||||| || |||||||||||||| || ||||| |||||| ||||||| ||| | |||||
Sbjct 907 CGTGCTGTCTTTTGCGGTTGGAGACGCCAACAATGCTTGCAAAGGATCAATGGTGGTTGA 966
Query 968 GGCATTTGCGGGAAAAGA--CACTTTAAAGGTACCTTATGAGTCGCGAGGGAAAGGAGGA 1025
||| ||||| |||||||| ||||| || ||| ||||| |||||| ||| | ||||||
Sbjct 967 GGCTTTTGCAGGAAAAGATACACTT-AA-GGTCCCTTACGAGTCGAAAGGCACAGGAGGG 1024
Query 1026 TTCAAACGCGCATCTCTGCGGTTTGTGGCGGTTTCGACCCGCA-CAAGGGTTATGTTTTA 1084
|| ||||| || ||| | || |||||||||||||||||||| | |||| ||||||| ||
Sbjct 1025 TTTAAACGAGCTTCTATTCGATTTGTGGCGGTTTCGACCCG-ATCAAGAATTATGTTCTA 1083
Query 1085 CAGCACGTTT-TACT-CGATGAGAAGCGATGATTTCTCGTCGCTGTGTGGGCCCGTGATC 1142
|||||| ||| || | | ||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1084 CAGCAC-TTTCTA-TGCCATGAGGAGCGATGATTTCTCGTCATTGTGTGGGCCTGTGATC 1141
Query 1143 GATGATGTTAAGCTCCTCAGTGCTCGTAAGCCGTAAGATGA 1183
|||||||| ||||| | || | |||||| || || |||||
Sbjct 1142 GATGATGTCAAGCTTATAAGCGTTCGTAAACCATA-GATGA 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5