BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487981
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11450.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem II... 1637 0.0
> AT5G11450.1 | Symbols: | Mog1/PsbP/DUF1795-like photosystem
II reaction center PsbP family protein | chr5:3654427-3656555
FORWARD LENGTH=1140
Length=1140
Score = 1637 bits (886), Expect = 0.0
Identities = 1013/1074 (94%), Gaps = 9/1074 (1%)
Strand=Plus/Plus
Query 1 GAACACGCCATAGCTATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCCAATTCTCGTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 34 GAACACGCCATAGCTATGGCTCTTCTCTGTCCTTCTCTTCCCTCTCCGAATTCTCGTCTT 93
Query 61 TTCAGGTGCAGGAGCAGCAACATTTCGAGTAAGTATCATGGAGAATCAAAGGAGCTGTTG 120
|||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||
Sbjct 94 TTCAGGTGCAGGAGCAGCAATATTTCGAGCAAGTATCATGGAGCCTCAAAGGAGCTGATG 153
Query 121 ATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTCTCTCGTAGG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 154 ATTGCTCGTTCTGGTGTGTCTACGAGATCAATTTCTTCGGAAAAGGGGCTTTCTCGTAGG 213
Query 181 GATTTGGTGCTAATTGGTCTCTCTTCTCCTTTGTCTATGCTCTTGCCACTGTCGTCTCCT 240
||||| ||||| ||||||||||||||||| ||||||||| |||||||| |||| |||||
Sbjct 214 GATTTAGTGCTCATTGGTCTCTCTTCTCCGTTGTCTATGTTCTTGCCATTGTCTTCTCCA 273
Query 241 GTCACTCATGCAGAAGAAGACCTGAAAATGGGTACAGAAGAATTGAAAATGGGTACAATG 300
||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 274 GTCACTCATGCAGAAGAAGACGTGAAAATGAGTGGAGAAGAATTGAAAATGGGTACAATG 333
Query 301 GTGGATGATATTAATGCTTACTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 334 GTGGATGATATTAATGCTTATTCTTATGCTTACCCATTGGATTATCCATCTGAGAAGCTT 393
Query 361 GTCTTCAAATGGGTCGAATCAAGAAAGCCCGAACGATACTCTTCAGCTGCACCACTCTCT 420
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 394 GTCTTCAAATGGGTTGAATCAAGAAAGCCTGAAAGATACTCTTCAGCTGCACCACTCTCT 453
Query 421 CCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCTCATC-GACAACCTCGTCAT 479
||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 454 CCTGATGCACGTTTACGGATTGTTTCTGAACGAGTTGACCT-AACTGACAACCTCGTCAT 512
Query 480 TTCTGTTTCGATAGGTCCCCCAAACTCGAGATTAACATCAAAAGAAAAGAAAACATGGGC 539
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 513 TTCTATTTCGATAGGTCCCCCAAACTCAAGATTAACATCAAAAGAAAAGAAAACATGGTC 572
Query 540 CGCTAAAGAAGTTGCTGACTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAG 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CGCTAAAGAAGTTGCTGATTCTGTTTTGTCTGATAAATCAGCATTGCGTGTCACCTCAAG 632
Query 600 TCAGCGTCTCGAAGAGAGCTCGGTTCTCGATGCACATGCTACTGATATTGATGGGGAGCC 659
||||||||| |||||||| |||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 633 TCAGCGTCTTGAAGAGAGTTCGGTTCTTGATGCTCATGCTAGTGATATTGATGGGGAGCC 692
Query 660 TTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TTACTGGTACTACGAGTACCTTGTCCGCAAATCACCAACCAAAATTGCTGAAGCATCAAA 752
Query 720 GCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGGTACTTATACACCATAAA 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 753 GCTTTACAGACACTATATTTCTTCAACAGCTGAACGTGATGGATACTTATACACCATAAA 812
Query 780 CGCTTCAACTCTTGGCAAGCAATGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGG 839
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGCTTCAACCCTTGGCAAGCAGTGGGACAAGATGGGACCGGTGTTAGAAAGAGCAGTAGG 872
Query 840 ATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 ATCCTTTAGGCTTCTTCCTCCTACTGATAGTTATGTTCCTCCATACAAGGATCCATGGAG 932
Query 900 GTTTTGGTGATGCTTTCATCTACCTCA-GCAAATA-CTTTTTTCCGAAATTGTTGTTAAT 957
||||||||||||||| ||||| ||||| | |||| |||||||| |||||||| ||||||
Sbjct 933 GTTTTGGTGATGCTTCCATCTGCCTCATG-AAATTTCTTTTTTC-GAAATTGTCGTTAAT 990
Query 958 TTTGATAGGAGAGG---TTATGAAAAATGTAGTGTGAGAAATGAGCGAAGCGAAGTAAGT 1014
|||||||||||||| |||||||| ||||||||||||||||||| ||||||||| | |
Sbjct 991 TTTGATAGGAGAGGAGGTTATGAAAGTTGTAGTGTGAGAAATGAGCCAAGCGAAGTGATT 1050
Query 1015 TGTCCAAATCTGAAAATCTTGTTCACAACCAAATGTATTGAGATGGAGATATAA 1068
| |||||||| ||| ||||||||||| | || |||||||||||| |||||||||
Sbjct 1051 TTTCCAAATCCGAATATCTTGTTCACTATCAGATGTATTGAGATTGAGATATAA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5