BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487985

Length=2821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11490.2 | Symbols:  | adaptin family protein | chr5:3671788...  4405    0.0  


> AT5G11490.2 | Symbols:  | adaptin family protein | chr5:3671788-3676452 
FORWARD LENGTH=2918
Length=2918

 Score = 4405 bits (2385),  Expect = 0.0
 Identities = 2576/2669 (97%), Gaps = 10/2669 (0%)
 Strand=Plus/Plus

Query  1     AGTGAACCAAAATCTCTCTCAATTTTATCACCCCGTGCTTCTGATCTCGGTGGGATTCTT  60
             |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| 
Sbjct  31    AGTGAACCAAAATCTCTCTCAAATTTATCACCCCGTGCTTCTGATCACGGTGGGATTCTC  90

Query  61    TCCGATCGGTAACATCTCGCCGTTCATACTCCGGTGGATCTCACCACAGCGTAATAATTT  120
             |||||||||| |||| |||  ||||||||||||||||||||   ||| ||||||||||||
Sbjct  91    TCCGATCGGTGACATATCGTGGTTCATACTCCGGTGGATCT---CACGGCGTAATAATTT  147

Query  121   ATCGTATCTGAATCGCAATCTTATTAGCCATGGCTCCTCCGGCCGCTTCGCAGCGTTATC  180
             ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct  148   ATCATATCTGAATCGCAATCTTATTAACCATGGCTCCTCCGGCCGCTTCACAGCGTTATC  207

Query  181   CGTCACCGTCCCAACCTTCAGGGAAAAGCGAAGTGTCAGATCTGAAAACCCAGCTTCGCC  240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  208   CGTCACCGTCCCAACCTTCAGGGAAAAGCGAAGTGTCAGATCTGAAAACCCAGCTTCGCC  267

Query  241   AACTAGCTGGAAGTAGAGCTCCAGGAGTTGATGATTCCAAACGTGACCTCTACAAGAAAG  300
             | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268   AGCTAGCTGGAAGCAGAGCTCCAGGAGTTGATGATTCCAAACGTGACCTCTACAAGAAAG  327

Query  301   TAATATCGTACATGACTATTGGTATTGACGTCTCATCTGTATTTGGAGAAATGGTCATGT  360
             |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  328   TAATATCGTACATGACTATTGGCATTGACGTCTCATCTGTATTTGGAGAGATGGTCATGT  387

Query  361   GCTCTGCAACATCTGACATTGTCCTGAAGAAGATGTGTTATCTTTATGTTGGCAACTATG  420
             |||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct  388   GCTCGGCAACATCAGACATTGTCCTGAAGAAGATGTGTTATCTTTACGTTGGAAACTATG  447

Query  421   CAAAAGGAAACCCTGATCTTTCTCTTTTGACGATCAATTTTCTCCAAAGAGATTGCAAAG  480
             |||| || || ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct  448   CAAAGGGCAATCCTGATCTTTCTCTTTTGACGATTAATTTTCTGCAAAGGGATTGCAAAG  507

Query  481   ATGAGGACCCTATGATCCGTGGGCTTGC-TCTGAGGAGCTTGTGTTCCTTACGAGTGCCA  539
             |||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct  508   ATGAGGACCCTATGATCCGTGGGCTTGCAT-TGAGGAGCTTGTGTTCTTTACGAGTGCCA  566

Query  540   AACCTTGTGGAGTATCTGGTTGGTCCCTTGGGGAGCGGGCTCAAGGACAATAACAGCTAT  599
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  567   AACCTTGTGGAGTATCTGGTTGGTCCCTTGGGGAGCGGGCTCAAGGACAATAATAGCTAT  626

Query  600   GTGAGAACAATCGCTGTTACTGGAGTACTAAAGCTTTATCACATCTCAGCCTCAACATGC  659
             || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  627   GTTAGAACTATCGCTGTTACTGGAGTACTAAAGCTTTATCACATCTCACCCTCAACATGC  686

Query  660   ATTGATGCCGATTTTCCTGCAACGTTGAAAAGTTTGATGCTTCATGATTCAGATGCTCAG  719
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687   ATTGATGCCGATTTTCCTGCAACGTTGAAAAGTTTGATGCTTCATGATTCAGATGCTCAG  746

Query  720   GTAGTTGCCAATTGCCTGTCTGCACTTCAAGAAATTTGGAGCTTAGAAGCAAGCCACTCT  779
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  747   GTAGTTGCCAATTGCCTGTCTGCACTTCAAGAAATTTGGAGTTTAGAAGCAAGCCACTCT  806

Query  780   GAGGAAGCATGCCGGGAAAAGGAATCCTTGCTTAGCAAGCCAGTTATATATTATTTCTTG  839
             ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  807   GAGGAAGCATGCCGGGAAAAGGAGTCCTTGCTCAGCAAGCCAGTTATATATTATTTCTTG  866

Query  840   AATCGGATCAAGGAATTCAATGAATGGGCACAATGTCTTATACTTGAGTTGGCAGTAAAA  899
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  867   AATCGGATCAAGGAATTCAATGAATGGGCACAATGTCTTATACTTGAGTTGGCAGTAAAA  926

Query  900   TATGTGCCCTCAGATAGTAATGATATTTTTGACATTATGAATCTGTTGGAAGACAGACTT  959
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  927   TATGTGCCGTCAGATAGTAATGATATTTTTGACATTATGAATCTGTTGGAAGACAGACTG  986

Query  960   CAGCATGCCAATGGAGCTGTTGTCTTGGCAACAGTCAAAGtttttttACAGTTAACACTC  1019
             ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct  987   CAGCATGCCAATGGAGCTGTTGTCTTGGCAACAGTCAAAGTGTTTTTACAATTAACTCTC  1046

Query  1020  TCCATGACAGATGTTCATCAACAGGTATATGAACGTATTAAATCCCCACTTCTAACTCTC  1079
             |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  1047  TCCATGACTGATGTTCATCAACAGGTATATGAGCGTATTAAATCCCCACTTCTAACTCTT  1106

Query  1080  GTCAGTTCTGGAAGTCCAGAGCAATCGTATGCAATCCTGAGCCACCTTCATCTTTTGGTT  1139
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1107  GTCAGTTCTGGAAGTCCAGAGCAATCGTATGCAATCTTGAGCCACCTTCATCTTTTGGTT  1166

Query  1140  GTTCGTGCGCCATTCATCTTTGCCGCAGACTATAAGCATTTCTACTGCCAGTACAATGAA  1199
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1167  GTTCGTGCGCCATTCATCTTTGCTGCAGACTATAAGCATTTCTACTGCCAGTACAATGAA  1226

Query  1200  CCATCATATGTCAAAAAGTTGAAGCTTGAGATGTTGACTGCTGTTGCAAACGAGAGCAAC  1259
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1227  CCATCATATGTCAAAAAGTTGAAGCTTGAGATGTTGACTGCTGTTGCAAACGAGAGCAAC  1286

Query  1260  ACTTACGAAATTGTGACGGAACTGTGTGAGTATGCTGCAAACGTTGATATTGCAATTGCG  1319
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1287  ACTTACGAAATCGTGACGGAACTGTGTGAGTATGCTGCAAACGTTGATATTGCAATTGCG  1346

Query  1320  AGGGAGTCAATTCGGGCAGTTGGGAAGATTGCTTTGCAACAGTATGATGTCAATGCGATT  1379
             || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  1347  AGAGAGTCAATTCGAGCAGTTGGAAAGATTGCTTTGCAACAGTATGATGTAAATGCGATT  1406

Query  1380  GTTGATAGACTTCTTCAATTCCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTG  1439
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1407  GTTGATAGACTTCTTCAATTTCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTG  1466

Query  1440  GTTCTTGTGAAGGACCTTCTAAGGAAGTATCCACAATGGAGCCATGATTGCATTTCTGTT  1499
             |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1467  GTTCTTGTAAAGGACCTTCTAAGGAAGTATCCACAATGGAGCCATGACTGCATTTCTGTT  1526

Query  1500  GTTGGGGGTATCAGCAGCAAAAATATCCAGGAACCGAAAGCCAAGGCGGCTCTTATATGG  1559
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1527  GTTGGGGGTATCAGCAGCAAAAATATCCAGGAACCGAAAGCCAAGGCGGCTCTTATATGG  1586

Query  1560  ATGTTGGGTGAGTATGCTCAGGACATGAGTGATGCTCCTTATGTTTTGGAGAATCTGATA  1619
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1587  ATGTTGGGTGAGTATGCACAGGACATGAGTGATGCTCCTTATGTTTTGGAGAATCTGATA  1646

Query  1620  GAAAACTGGGAGGAAGAGCATTCAGCTGAGGTTCGGTTACATCTCTTAACTGCAGCAATG  1679
             |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  1647  GAAAACTGGGAGGAAGAGCATTCAGCCGAGGTTCGGTTACATCTCTTAACTGCGGCAATG  1706

Query  1680  AAATGCTTTTTCAAGAGGGCACCTGAGACTCAGAAAGCCCTAGGAATAGCTCTAGCTGCA  1739
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  1707  AAATGCTTTTTCAAGAGGGCACCTGAGACTCAGAAAGCCCTAGGAACAGCTCTAGCTGCA  1766

Query  1740  GGTATTGCTGATTTTCACCAGGATGTTCATGACCGAGCCTTGTTCTACTATCGGGTTCTG  1799
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1767  GGCATTGCTGATTTTCACCAGGATGTTCATGACCGAGCCTTGTTCTACTATCGGGTTCTG  1826

Query  1800  CAATACGATGTACACGTGGCAGAACGTGTTGTTAGTCCTCCAAAACAGGCGGTTTCAGTC  1859
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1827  CAATACGATGTACACGTGGCAGAACGTGTTGTTAGTCCTCCAAAACAGGCGGTTTCAGTC  1886

Query  1860  TTTGCTGACACTCAAAGCAGTGAAATCAAAGACCGTATATTTGACGAGTTTAACAGCCTT  1919
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1887  TTTGCTGACACTCAAAGCAGTGAAATCAAAGACCGTGTATTTGACGAGTTTAACAGCCTT  1946

Query  1920  TCTGTGATATACCAGAAGCCATCTTACATGTTCACGGATAAGGAACACCGAGGACCCTTT  1979
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1947  TCTGTGATATACCAGAAGCCATCTTACATGTTTACGGATAAGGAACACCGAGGACCCTTT  2006

Query  1980  GAGTTTTCAGACGAACTTGGAAATATTTCCATCACACCTGAAGCCTCCAGCGACATTGTT  2039
             |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2007  GAGTTTTCTGACGAAGTTGGAAATATTTCCATCACACCTGAAGCCTCCAGCGACATTGTT  2066

Query  2040  CCAGCTCAGCAATATGAGGCAAATGACAAGGACCTGCTTCTAGGTGTTGACGAGAAGGAT  2099
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  2067  CCAGCTCAGCAATATGAGGCAAATGACAAGGACCTGCTTCTAGGTATTGACGAGAAGGAT  2126

Query  2100  GACAATAAAGGACTTTCCAATAACAATGGTTCCGCTTACACGGCTCCTTCATTAGAAAGC  2159
             || ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  2127  GAAAATAAAGGAGTTTCCAATAACAATGGTTCTGCTTACACGGCCCCTTCATTAGAAAGC  2186

Query  2160  TCCTCTAGTATAAGCTCACAAATGCAAGAGCTTGCAATCTCCGGGCCC-GCCACATCCGC  2218
             ||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  2187  TCCTCTAATATAACCTCACAAATGCAAGAGCTTGCAATCTCCGG-CCCTGCCACATCCGC  2245

Query  2219  AACTACCCCACAATCAAGCTTTGGGTTTGATGATCTATTTGGTTTGGGTTTATCTACAGC  2278
             ||||||||||||||||   ||||| ||||||||||| ||||||||||||||||| || ||
Sbjct  2246  AACTACCCCACAATCA---TTTGGTTTTGATGATCTCTTTGGTTTGGGTTTATCAACCGC  2302

Query  2279  TCCTGCTCCAACACCATCACCGCCTCTTTTGAAACTTAACCCAAGAGCTGCTCTAGATCC  2338
             |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  2303  TCCTGCTCCAACACCATCACCGCCTCTTTTGAAACTTAACGCAAGAGCTGCTTTAGATCC  2362

Query  2339  AGGTGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCATTAACACAGGAGTGTTCTGT  2398
             ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  2363  AGGCGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCACTAACACAGGAGTGTTCTGT  2422

Query  2399  GAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAGTCACTTATCAGACACATGCAGAG  2458
             |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct  2423  GAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAATCACTTATCAAACACATGCAGAG  2482

Query  2459  TCATTCCATTCACTGTATTGCATCGGGCGGTCAATCTCCAAACTTCAAGTTCTTCTTTTT  2518
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  2483  TCATTCCATTCACTGTATCGCATCGGGCGGTCAATCTCCAAACTTCAAGTTCTTCTTTTT  2542

Query  2519  CGCTCAAAAGGAATCAGAACCATCGAACTATCTCGCTGAGTGCATCATAAACACTTCATC  2578
             |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct  2543  CGCTCAAAAGGAATCAGAACCATCGAACTATCTCACTGAGTGTATCATAAACACTTCATC  2602

Query  2579  CGCCAAAGCTCAGATAAAAGTGAAAGCAGACGAGCAGAGTACGTCTCAGGCATTCACAAC  2638
              ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  2603  AGCCAAAGCTCAGATAAAAGTGAAAGCAGACGAGCAGAGTACGTGTCAAGCATTCACAAC  2662

Query  2639  CGTATTTGAAACAGCCTTGTCCAAATTTG  2667
             |||||||||||||||||||||||||||||
Sbjct  2663  CGTATTTGAAACAGCCTTGTCCAAATTTG  2691



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 140166438742


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5