BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487985 Length=2821 Score E Sequences producing significant alignments: (Bits) Value AT5G11490.2 | Symbols: | adaptin family protein | chr5:3671788... 4405 0.0 > AT5G11490.2 | Symbols: | adaptin family protein | chr5:3671788-3676452 FORWARD LENGTH=2918 Length=2918 Score = 4405 bits (2385), Expect = 0.0 Identities = 2576/2669 (97%), Gaps = 10/2669 (0%) Strand=Plus/Plus Query 1 AGTGAACCAAAATCTCTCTCAATTTTATCACCCCGTGCTTCTGATCTCGGTGGGATTCTT 60 |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 31 AGTGAACCAAAATCTCTCTCAAATTTATCACCCCGTGCTTCTGATCACGGTGGGATTCTC 90 Query 61 TCCGATCGGTAACATCTCGCCGTTCATACTCCGGTGGATCTCACCACAGCGTAATAATTT 120 |||||||||| |||| ||| |||||||||||||||||||| ||| |||||||||||| Sbjct 91 TCCGATCGGTGACATATCGTGGTTCATACTCCGGTGGATCT---CACGGCGTAATAATTT 147 Query 121 ATCGTATCTGAATCGCAATCTTATTAGCCATGGCTCCTCCGGCCGCTTCGCAGCGTTATC 180 ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 148 ATCATATCTGAATCGCAATCTTATTAACCATGGCTCCTCCGGCCGCTTCACAGCGTTATC 207 Query 181 CGTCACCGTCCCAACCTTCAGGGAAAAGCGAAGTGTCAGATCTGAAAACCCAGCTTCGCC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 CGTCACCGTCCCAACCTTCAGGGAAAAGCGAAGTGTCAGATCTGAAAACCCAGCTTCGCC 267 Query 241 AACTAGCTGGAAGTAGAGCTCCAGGAGTTGATGATTCCAAACGTGACCTCTACAAGAAAG 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 268 AGCTAGCTGGAAGCAGAGCTCCAGGAGTTGATGATTCCAAACGTGACCTCTACAAGAAAG 327 Query 301 TAATATCGTACATGACTATTGGTATTGACGTCTCATCTGTATTTGGAGAAATGGTCATGT 360 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 328 TAATATCGTACATGACTATTGGCATTGACGTCTCATCTGTATTTGGAGAGATGGTCATGT 387 Query 361 GCTCTGCAACATCTGACATTGTCCTGAAGAAGATGTGTTATCTTTATGTTGGCAACTATG 420 |||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 388 GCTCGGCAACATCAGACATTGTCCTGAAGAAGATGTGTTATCTTTACGTTGGAAACTATG 447 Query 421 CAAAAGGAAACCCTGATCTTTCTCTTTTGACGATCAATTTTCTCCAAAGAGATTGCAAAG 480 |||| || || ||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 448 CAAAGGGCAATCCTGATCTTTCTCTTTTGACGATTAATTTTCTGCAAAGGGATTGCAAAG 507 Query 481 ATGAGGACCCTATGATCCGTGGGCTTGC-TCTGAGGAGCTTGTGTTCCTTACGAGTGCCA 539 |||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| Sbjct 508 ATGAGGACCCTATGATCCGTGGGCTTGCAT-TGAGGAGCTTGTGTTCTTTACGAGTGCCA 566 Query 540 AACCTTGTGGAGTATCTGGTTGGTCCCTTGGGGAGCGGGCTCAAGGACAATAACAGCTAT 599 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 567 AACCTTGTGGAGTATCTGGTTGGTCCCTTGGGGAGCGGGCTCAAGGACAATAATAGCTAT 626 Query 600 GTGAGAACAATCGCTGTTACTGGAGTACTAAAGCTTTATCACATCTCAGCCTCAACATGC 659 || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 627 GTTAGAACTATCGCTGTTACTGGAGTACTAAAGCTTTATCACATCTCACCCTCAACATGC 686 Query 660 ATTGATGCCGATTTTCCTGCAACGTTGAAAAGTTTGATGCTTCATGATTCAGATGCTCAG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 687 ATTGATGCCGATTTTCCTGCAACGTTGAAAAGTTTGATGCTTCATGATTCAGATGCTCAG 746 Query 720 GTAGTTGCCAATTGCCTGTCTGCACTTCAAGAAATTTGGAGCTTAGAAGCAAGCCACTCT 779 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 747 GTAGTTGCCAATTGCCTGTCTGCACTTCAAGAAATTTGGAGTTTAGAAGCAAGCCACTCT 806 Query 780 GAGGAAGCATGCCGGGAAAAGGAATCCTTGCTTAGCAAGCCAGTTATATATTATTTCTTG 839 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 807 GAGGAAGCATGCCGGGAAAAGGAGTCCTTGCTCAGCAAGCCAGTTATATATTATTTCTTG 866 Query 840 AATCGGATCAAGGAATTCAATGAATGGGCACAATGTCTTATACTTGAGTTGGCAGTAAAA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 867 AATCGGATCAAGGAATTCAATGAATGGGCACAATGTCTTATACTTGAGTTGGCAGTAAAA 926 Query 900 TATGTGCCCTCAGATAGTAATGATATTTTTGACATTATGAATCTGTTGGAAGACAGACTT 959 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 927 TATGTGCCGTCAGATAGTAATGATATTTTTGACATTATGAATCTGTTGGAAGACAGACTG 986 Query 960 CAGCATGCCAATGGAGCTGTTGTCTTGGCAACAGTCAAAGtttttttACAGTTAACACTC 1019 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 987 CAGCATGCCAATGGAGCTGTTGTCTTGGCAACAGTCAAAGTGTTTTTACAATTAACTCTC 1046 Query 1020 TCCATGACAGATGTTCATCAACAGGTATATGAACGTATTAAATCCCCACTTCTAACTCTC 1079 |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1047 TCCATGACTGATGTTCATCAACAGGTATATGAGCGTATTAAATCCCCACTTCTAACTCTT 1106 Query 1080 GTCAGTTCTGGAAGTCCAGAGCAATCGTATGCAATCCTGAGCCACCTTCATCTTTTGGTT 1139 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1107 GTCAGTTCTGGAAGTCCAGAGCAATCGTATGCAATCTTGAGCCACCTTCATCTTTTGGTT 1166 Query 1140 GTTCGTGCGCCATTCATCTTTGCCGCAGACTATAAGCATTTCTACTGCCAGTACAATGAA 1199 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1167 GTTCGTGCGCCATTCATCTTTGCTGCAGACTATAAGCATTTCTACTGCCAGTACAATGAA 1226 Query 1200 CCATCATATGTCAAAAAGTTGAAGCTTGAGATGTTGACTGCTGTTGCAAACGAGAGCAAC 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 CCATCATATGTCAAAAAGTTGAAGCTTGAGATGTTGACTGCTGTTGCAAACGAGAGCAAC 1286 Query 1260 ACTTACGAAATTGTGACGGAACTGTGTGAGTATGCTGCAAACGTTGATATTGCAATTGCG 1319 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1287 ACTTACGAAATCGTGACGGAACTGTGTGAGTATGCTGCAAACGTTGATATTGCAATTGCG 1346 Query 1320 AGGGAGTCAATTCGGGCAGTTGGGAAGATTGCTTTGCAACAGTATGATGTCAATGCGATT 1379 || ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1347 AGAGAGTCAATTCGAGCAGTTGGAAAGATTGCTTTGCAACAGTATGATGTAAATGCGATT 1406 Query 1380 GTTGATAGACTTCTTCAATTCCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTG 1439 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1407 GTTGATAGACTTCTTCAATTTCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTG 1466 Query 1440 GTTCTTGTGAAGGACCTTCTAAGGAAGTATCCACAATGGAGCCATGATTGCATTTCTGTT 1499 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1467 GTTCTTGTAAAGGACCTTCTAAGGAAGTATCCACAATGGAGCCATGACTGCATTTCTGTT 1526 Query 1500 GTTGGGGGTATCAGCAGCAAAAATATCCAGGAACCGAAAGCCAAGGCGGCTCTTATATGG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1527 GTTGGGGGTATCAGCAGCAAAAATATCCAGGAACCGAAAGCCAAGGCGGCTCTTATATGG 1586 Query 1560 ATGTTGGGTGAGTATGCTCAGGACATGAGTGATGCTCCTTATGTTTTGGAGAATCTGATA 1619 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1587 ATGTTGGGTGAGTATGCACAGGACATGAGTGATGCTCCTTATGTTTTGGAGAATCTGATA 1646 Query 1620 GAAAACTGGGAGGAAGAGCATTCAGCTGAGGTTCGGTTACATCTCTTAACTGCAGCAATG 1679 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1647 GAAAACTGGGAGGAAGAGCATTCAGCCGAGGTTCGGTTACATCTCTTAACTGCGGCAATG 1706 Query 1680 AAATGCTTTTTCAAGAGGGCACCTGAGACTCAGAAAGCCCTAGGAATAGCTCTAGCTGCA 1739 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1707 AAATGCTTTTTCAAGAGGGCACCTGAGACTCAGAAAGCCCTAGGAACAGCTCTAGCTGCA 1766 Query 1740 GGTATTGCTGATTTTCACCAGGATGTTCATGACCGAGCCTTGTTCTACTATCGGGTTCTG 1799 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1767 GGCATTGCTGATTTTCACCAGGATGTTCATGACCGAGCCTTGTTCTACTATCGGGTTCTG 1826 Query 1800 CAATACGATGTACACGTGGCAGAACGTGTTGTTAGTCCTCCAAAACAGGCGGTTTCAGTC 1859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1827 CAATACGATGTACACGTGGCAGAACGTGTTGTTAGTCCTCCAAAACAGGCGGTTTCAGTC 1886 Query 1860 TTTGCTGACACTCAAAGCAGTGAAATCAAAGACCGTATATTTGACGAGTTTAACAGCCTT 1919 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1887 TTTGCTGACACTCAAAGCAGTGAAATCAAAGACCGTGTATTTGACGAGTTTAACAGCCTT 1946 Query 1920 TCTGTGATATACCAGAAGCCATCTTACATGTTCACGGATAAGGAACACCGAGGACCCTTT 1979 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1947 TCTGTGATATACCAGAAGCCATCTTACATGTTTACGGATAAGGAACACCGAGGACCCTTT 2006 Query 1980 GAGTTTTCAGACGAACTTGGAAATATTTCCATCACACCTGAAGCCTCCAGCGACATTGTT 2039 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2007 GAGTTTTCTGACGAAGTTGGAAATATTTCCATCACACCTGAAGCCTCCAGCGACATTGTT 2066 Query 2040 CCAGCTCAGCAATATGAGGCAAATGACAAGGACCTGCTTCTAGGTGTTGACGAGAAGGAT 2099 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2067 CCAGCTCAGCAATATGAGGCAAATGACAAGGACCTGCTTCTAGGTATTGACGAGAAGGAT 2126 Query 2100 GACAATAAAGGACTTTCCAATAACAATGGTTCCGCTTACACGGCTCCTTCATTAGAAAGC 2159 || ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2127 GAAAATAAAGGAGTTTCCAATAACAATGGTTCTGCTTACACGGCCCCTTCATTAGAAAGC 2186 Query 2160 TCCTCTAGTATAAGCTCACAAATGCAAGAGCTTGCAATCTCCGGGCCC-GCCACATCCGC 2218 ||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 2187 TCCTCTAATATAACCTCACAAATGCAAGAGCTTGCAATCTCCGG-CCCTGCCACATCCGC 2245 Query 2219 AACTACCCCACAATCAAGCTTTGGGTTTGATGATCTATTTGGTTTGGGTTTATCTACAGC 2278 |||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || Sbjct 2246 AACTACCCCACAATCA---TTTGGTTTTGATGATCTCTTTGGTTTGGGTTTATCAACCGC 2302 Query 2279 TCCTGCTCCAACACCATCACCGCCTCTTTTGAAACTTAACCCAAGAGCTGCTCTAGATCC 2338 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 2303 TCCTGCTCCAACACCATCACCGCCTCTTTTGAAACTTAACGCAAGAGCTGCTTTAGATCC 2362 Query 2339 AGGTGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCATTAACACAGGAGTGTTCTGT 2398 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2363 AGGCGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCACTAACACAGGAGTGTTCTGT 2422 Query 2399 GAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAGTCACTTATCAGACACATGCAGAG 2458 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 2423 GAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAATCACTTATCAAACACATGCAGAG 2482 Query 2459 TCATTCCATTCACTGTATTGCATCGGGCGGTCAATCTCCAAACTTCAAGTTCTTCTTTTT 2518 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2483 TCATTCCATTCACTGTATCGCATCGGGCGGTCAATCTCCAAACTTCAAGTTCTTCTTTTT 2542 Query 2519 CGCTCAAAAGGAATCAGAACCATCGAACTATCTCGCTGAGTGCATCATAAACACTTCATC 2578 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 2543 CGCTCAAAAGGAATCAGAACCATCGAACTATCTCACTGAGTGTATCATAAACACTTCATC 2602 Query 2579 CGCCAAAGCTCAGATAAAAGTGAAAGCAGACGAGCAGAGTACGTCTCAGGCATTCACAAC 2638 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 2603 AGCCAAAGCTCAGATAAAAGTGAAAGCAGACGAGCAGAGTACGTGTCAAGCATTCACAAC 2662 Query 2639 CGTATTTGAAACAGCCTTGTCCAAATTTG 2667 ||||||||||||||||||||||||||||| Sbjct 2663 CGTATTTGAAACAGCCTTGTCCAAATTTG 2691 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 140166438742 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5