BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488014
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11770.1 | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa... 1578 0.0
> AT5G11770.1 | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa
subunit, mitochondrial | chr5:3790806-3793000 REVERSE LENGTH=1070
Length=1070
Score = 1578 bits (854), Expect = 0.0
Identities = 955/1000 (96%), Gaps = 22/1000 (2%)
Strand=Plus/Plus
Query 4 TCGTTTGGTTATCACAACTCCACGACGAGAGG-aaaaaaaaaCTCAGAGAGAC-AATCTC 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 11 TCGTTTGGTTATCACAACTCCACGACGAGAGGAAAAAAAAAACTCAGAGAGACAAATCTA 70
Query 62 AATGGCGATGATTACGCGCAACACCGCCACGCGCCTCCCTCTCCTCCTCCAATCTCAACG 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 AATGGCGATGATTACGCGCAACACCGCCACGCGCCTCCCTCTCCTCCTCCAATCTCAACG 130
Query 122 CGCCGCCGCGGCTGCCTCGGTGTCTCACCTCCACACATCCCTTCCCGCTCTCTCTCCCTC 181
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 131 CGCCGTCGCCGCTGCCTCGGTCTCTCACCTCCACACATCCCTTCCCGCTCTCTCTCCCTC 190
Query 182 CACATCACCGACTTCCTACACCAGACCTGGTCCTCCTTCGACTTCCCCTCCTCCTCCTGG 241
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 191 CACATCACCGACTTCCTACACCAGACCTGGTCCTCCTTCGACCTCCCCTCCTCCTCCTGG 250
Query 242 TCTCTCTAAAGCGGCCGAATTTGTGATCTCCAAGGTCGATGATCTCATGAATTGGGCTCG 301
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 251 TCTCTCTAAAGCGGCCGAATTTGTGATCTCCAAGGTCGATGATCTCATGAACTGGGCTCG 310
Query 302 TACGGGATCGATCTGGCCTATGACCTTTGGTCTCGCTTGCTGCGCCGTCGAAATGATGCA 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TACCGGATCGATCTGGCCTATGACCTTTGGTCTCGCTTGCTGCGCCGTCGAAATGATGCA 370
Query 362 TACCGGTGCTGCTCGCTACGATCTCGATCGATTCGGTATCATCTTCAGACCTAGTCCTCG 421
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 371 TACCGGTGCTGCTCGCTACGATCTCGATCGATTCGGTATCATCTTCAGGCCTAGTCCTCG 430
Query 422 TCAGTCTGATTGTATGATTGTCGCCGGGACTCTTACCAATAAGATGGCTCCGGCTCTTCG 481
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 431 CCAGTCTGATTGTATGATTGTCGCCGGTACTCTTACCAATAAGATGGCTCCGGCTCTTCG 490
Query 482 CAAGGTTTATGACCAGATGCCTGAGCCAAGGTGGGTGATTTCAATGGGAAGTTGTGCCAA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CAAGGTTTATGACCAGATGCCTGAGCCAAGGTGGGTGATTTCAATGGGAAGTTGTGCCAA 550
Query 542 CGGAGGTGGATACTATCATTACTCCTACTCGGTGGTTAGAGGATGTGACAGAATTGTGCC 601
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 551 TGGAGGTGGATACTATCACTACTCCTACTCGGTGGTTCGAGGATGTGACAGAATTGTCCC 610
Query 602 AGTCGACATATACGTCCCTGGGTGCCCACCAACCGCTGAGGCTTTGCTCTATGGACTACT 661
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AGTCGACATATACGTCCCGGGGTGCCCACCAACCGCTGAGGCTTTGCTCTATGGACTACT 670
Query 662 CCAGCTTCAGAAGAAAATCAACAGGCGCAAGGATTTCTTGCATTGGTGGAACAAGTGAGC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 CCAGCTTCAGAAGAAAATCAACAGGCGCAAGGATTTCTTGCATTGGTGGAACAAGTGAGC 730
Query 722 ATCAAATCCTTCCTC-AACCGTGAAAGGGACTTTTT-CAGACATTTTTACCAAAGTTTGG 779
|| || || ||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 731 TTCGAACCCGTCCTCCAATCGTGAAAGGGACTTTTTTCAGACATTTTTACCAAAGTTTGG 790
Query 780 GGATAATAAATCGTGGACGTTTCATTGCATGTTTCTTTGTGGTGGAGATGCCATGTAAAG 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 791 GGATAATAAATCGTGGACGTTTCATTGCATATTTCTTTGTGGTGGAGATGCCATGTAAAG 850
Query 840 GAGTGTGTTTCTAAGTTTGTTGTGGAAACTTAATAAACTTAAGATGTTTGTTGTCTGAGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GAGTGTGTTTCTAAGTTTGTTGTGGAAACTTAATAAACTTAAGATGTTTGTTGTCTGAGT 910
Query 900 TCTTTTAT----T-----AT-A-A-ATCT------ACCAGTTTTCAGCTACATGCTGACT 941
|||||||| | || | | |||| |||||||||||||||||||||||||
Sbjct 911 TCTTTTATGGGCTCTTTTATTATATATCTCTCTCTACCAGTTTTCAGCTACATGCTGACT 970
Query 942 ATTGCTAAATATCTACATATATTTATATATACGAGTGTGT 981
||||||||||| ||||||||||||||| ||||||||||||
Sbjct 971 ATTGCTAAATACCTACATATATTTATACATACGAGTGTGT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5