BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488045 Length=483 Score E Sequences producing significant alignments: (Bits) Value AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat sh... 719 0.0 AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock... 614 3e-175 > AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat shock protein 17.6A | chr5:3884107-3884737 REVERSE LENGTH=631 Length=631 Score = 719 bits (389), Expect = 0.0 Identities = 451/482 (94%), Gaps = 0/482 (0%) Strand=Plus/Plus Query 2 TGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAAG 61 |||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||||| Sbjct 61 TGGAGTTTGGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAAG 120 Query 62 AACAAACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA 121 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AACAAACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA 180 Query 122 TGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTGGACA 181 ||||||||||||||||||||||||||||||| || || ||||| ||||||| |||||||| Sbjct 181 TGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGACA 240 Query 182 TGCCTGGAATCAAAGGAGATGAGATTCAGGTTCAGATCGAGAGCGAGAACGTTCTTGTGG 241 ||||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| Sbjct 241 TGCCTGGAATCAAAGGAGATGAGATTCAGGTCCAGATAGAGAACGAGAACGTGCTTGTGG 300 Query 242 TGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAGGATGG 301 ||||||| ||||||||||| || | ||| ||||| ||||||||||||||||||||||||| Sbjct 301 TGAGTGGCAAAAGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGGATGG 360 Query 302 AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTTGGACA 361 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | Sbjct 361 AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTGGAGA 420 Query 362 AGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCCTCCTC 421 |||||||||| ||||| ||||||||||||||||||||| | ||| |||||||||||||| Sbjct 421 AGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCTCCTC 480 Query 422 CTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTTGTGATCGT 481 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 CTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGAGTTTGTTTGTGATCGT 540 Query 482 GT 483 || Sbjct 541 GT 542 > AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882237-3882938 REVERSE LENGTH=702 Length=702 Score = 614 bits (332), Expect = 3e-175 Identities = 437/488 (90%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 1 ATGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAA 60 |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||| Sbjct 63 ATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTCCCCGAA 122 Query 61 GA--ACAA-ACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAG 117 || |||| | |||||||||||| |||||||||||| ||| ||||||||||||||| ||| Sbjct 123 GACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGACGCTAAG 182 Query 118 GCAATGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTG 177 ||||||||||||||||| |||||||| |||||||| ||| |||| |||| ||||||||| Sbjct 183 GCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTCGTCGTG 242 Query 178 GACATGCCTGGAATCAAAGGAGATGAGATTCA-GGTTCAGATCGAGAGCGAGAACGTTCT 236 ||||||||||||||||||||||||||||| || ||||||| |||||| ||| || || || Sbjct 243 GACATGCCTGGAATCAAAGGAGATGAGAT-CAAGGTTCAGGTCGAGAACGACAATGTGCT 301 Query 237 TGTGGTGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAG 296 ||||||||||||| | || |||||||||| |||||| |||||||||||||||| |||||| Sbjct 302 TGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTATGTGAG 361 Query 297 GATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTT 356 ||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 362 GATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCAGATTT 421 Query 357 GGACAAGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCC 416 |||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||| Sbjct 422 GGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAACTTCC 481 Query 417 TCCTCCTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTT-GT 475 |||||| || || |||||||||||||| || |||||||||||||||||||||||||| || Sbjct 482 TCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAGTTGCTTGAGTTTGTTTTGT 541 Query 476 GATCGTGT 483 ||| |||| Sbjct 542 GATTGTGT 549 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23007239326 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5