BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488045

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat sh...   719    0.0   
  AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock...   614    3e-175


> AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat 
shock protein 17.6A | chr5:3884107-3884737 REVERSE LENGTH=631
Length=631

 Score =  719 bits (389),  Expect = 0.0
 Identities = 451/482 (94%), Gaps = 0/482 (0%)
 Strand=Plus/Plus

Query  2    TGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAAG  61
            |||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct  61   TGGAGTTTGGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAAG  120

Query  62   AACAAACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA  121
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AACAAACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA  180

Query  122  TGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTGGACA  181
            ||||||||||||||||||||||||||||||| || || ||||| ||||||| ||||||||
Sbjct  181  TGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGACA  240

Query  182  TGCCTGGAATCAAAGGAGATGAGATTCAGGTTCAGATCGAGAGCGAGAACGTTCTTGTGG  241
            ||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||||||
Sbjct  241  TGCCTGGAATCAAAGGAGATGAGATTCAGGTCCAGATAGAGAACGAGAACGTGCTTGTGG  300

Query  242  TGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAGGATGG  301
            ||||||| ||||||||||| || | ||| ||||| |||||||||||||||||||||||||
Sbjct  301  TGAGTGGCAAAAGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGGATGG  360

Query  302  AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTTGGACA  361
            ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct  361  AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTGGAGA  420

Query  362  AGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCCTCCTC  421
            ||||||||||  ||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct  421  AGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCTCCTC  480

Query  422  CTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTTGTGATCGT  481
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  481  CTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGAGTTTGTTTGTGATCGT  540

Query  482  GT  483
            ||
Sbjct  541  GT  542


> AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock 
protein | chr5:3882237-3882938 REVERSE LENGTH=702
Length=702

 Score =  614 bits (332),  Expect = 3e-175
 Identities = 437/488 (90%), Gaps = 6/488 (1%)
 Strand=Plus/Plus

Query  1    ATGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAA  60
            |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct  63   ATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTCCCCGAA  122

Query  61   GA--ACAA-ACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAG  117
            ||  |||| | |||||||||||| |||||||||||| ||| ||||||||||||||| |||
Sbjct  123  GACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGACGCTAAG  182

Query  118  GCAATGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTG  177
            ||||||||||||||||| |||||||| |||||||| ||| |||| ||||  |||||||||
Sbjct  183  GCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTCGTCGTG  242

Query  178  GACATGCCTGGAATCAAAGGAGATGAGATTCA-GGTTCAGATCGAGAGCGAGAACGTTCT  236
            ||||||||||||||||||||||||||||| || ||||||| |||||| ||| || || ||
Sbjct  243  GACATGCCTGGAATCAAAGGAGATGAGAT-CAAGGTTCAGGTCGAGAACGACAATGTGCT  301

Query  237  TGTGGTGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAG  296
            ||||||||||||| | || |||||||||| |||||| |||||||||||||||| ||||||
Sbjct  302  TGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTATGTGAG  361

Query  297  GATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTT  356
            ||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct  362  GATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCAGATTT  421

Query  357  GGACAAGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCC  416
            ||||||||||||||||  ||||||||||||||||||||| || | |||||||||||||||
Sbjct  422  GGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAACTTCC  481

Query  417  TCCTCCTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTT-GT  475
            |||||| || || |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct  482  TCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAGTTGCTTGAGTTTGTTTTGT  541

Query  476  GATCGTGT  483
            ||| ||||
Sbjct  542  GATTGTGT  549



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5