BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488055
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12120.1 | Symbols: | Ubiquitin-associated/translation elon... 3243 0.0
> AT5G12120.1 | Symbols: | Ubiquitin-associated/translation elongation
factor EF1B protein | chr5:3916048-3918659 REVERSE
LENGTH=2154
Length=2154
Score = 3243 bits (1756), Expect = 0.0
Identities = 2025/2148 (94%), Gaps = 46/2148 (2%)
Strand=Plus/Plus
Query 1 AAGctctctcaccttcttcttcttcttcttcctcttctccggatctcgcttctcCGTCAA 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 13 AAGCTCTCTCACCTTCTTCTTCTTCTTCTTCTTCTTCTCCGGATCTCGCTTCTCCGTCAA 72
Query 61 CGACTCCGATCAACCTACTAGGATAACTTTGTTG-TGAGAAGATGTCTAGCGCATCCAAG 119
|||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||
Sbjct 73 CGACTCCGATCAACCTACCAGGATAACTTTG-TGTTGAGAAGATGTCTAGTGCATCCAAG 131
Query 120 ATCAAATCGAGAGACAAGAAGGTTATGAATGATTCACAGAAGACACCTAGTAAAGCATCG 179
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 132 ATGAAATCGAGAGACAAGAAGGTCATGAATGATTCACAGAAGACACCTAGTAAAGCGTCT 191
Query 180 GGATCCATGGGTGCAAGTACTGGTGTTGTGGTTGGTGCTTACAATCCACTTTTGGGGACA 239
||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 192 GGATCCATGGGTGGAAGTA---GTGTTGTGGTTGGTGGTTATAATCCACTTTTGGGGACA 248
Query 240 TTTCAAACCGTTGAGTCGCTTTCAGCAACTGGTTCCTCGTCTCTTCATAATAATGGCCGG 299
||||||||| |||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 249 TTTCAAACCATTGAGTCGCTTTCAGCAACTGGCTCATCATCTCTTCACAATAATGGCCGG 308
Query 300 TTCAGACACATTGATGAGTCGGATTCAACTGGAGCTGACTGTGATTCTGTCTCTAATAAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TTCAGACACATTGATGAGTCGGATTCAACTGGAGCTGACTGTGATTCTGTCTCTAATAAT 368
Query 360 GGTAGCTGGTCTGGTGACTCAGAAGATCACAAAGAGAAAGTGCCTAGTAC------TGCT 413
||||||||||| ||||| || |||||||||||||||||||| |||||||| ||||
Sbjct 369 GGTAGCTGGTCAGGTGAATCTGAAGATCACAAAGAGAAAGTACCTAGTACTAGTATTGCT 428
Query 414 GCAAAACAAGAAATCATTCCTGGAGCTGACAATGACAAGCGAGATAAGATGCGGCTGAAG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 429 GCAAAACAAGAAATCATTCCTGGAGCTGACAATGACAAGCGAGATAAGATGCGTCTGAAG 488
Query 474 AATGAAAGAAAGCACCAACGTCAAAAGGAAAAGCGAGCTCAGGAGTTGCATGAGCGATGC 533
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AATGAAAGAAAGCATCAGCGTCAAAAGGAAAAGCGAGCTCAGGAGTTGCATGAGCGATGC 548
Query 534 TGTCAGTATCTCATGTCGAGAAAACTTGAAGTTCATGCTCAGCAGATTATAGCAATGGGG 593
||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 549 TGTCAGTATCTCATGTCGAGAAAACTTGAAGTTCATGCTCAGCTGATTATATCTATGGGG 608
Query 594 ATTGCTCATGAGCGGGCAACTTATGCTCTTATGCTAAATGAAGGGAAAATAGAGGAATCT 653
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 609 ATTCCTCATGAGCGGGCAACTTATGCTCTTATGTTGAATGAAGGGAAAATAGAGGAATCT 668
Query 654 ATTAATTGGCTGTTTGATGATGGTGGGGCAAAAGTAGCAGATAAGAAACTAGATCCTACC 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 669 ATTAATTGGCTGTTTGATGATGGTGGGGCAAAAGTAGCAGATAAGAAACTAGATCCGACC 728
Query 714 TCTGGGAACTTAAAGCTTGACATATCACAAGAGTTGGGTAGAATCTTGGAGTTGGAAACA 773
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 729 TCTGGGAACTTAAAGCTTGACATATCACAAGAGTTGGGTAGAATCTTAGAGTTGGAAACA 788
Query 774 AAATATAAGTGCACCAAGCAGGATGTAGAAAGAGCTGTGGTTACAGCAGAGGGGGACATT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AAATATAAGTGCACCAAGCAGGATGTAGAAAGAGCTGTGGTTACAGCAGAGGGGGACATT 848
Query 834 GAGAAAGCAGAAGAAACATTAAGAAGACAGAAGCAAGACCAATCTACTGCGTCTAGAAAA 893
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAGAAAGCAGAAGAAGCATTAAGAAGACAGAAGCAAGACCAATCTACTGCGTCTAGAAAA 908
Query 894 GTAGAGGATATTAGTGATAATACTTCTGTTAACAGTAGCAAAGTCCCTTCTGTGCTCACA 953
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 909 CCAGAGGATATTAGTGATAGTACTTCTGTTAACAATAGCAAAGTCCCTTCTGTGCTCACA 968
Query 954 AGTCAGAATACAGTAGCCCAGTTACAACCTAACTCAGGTATGTATCCTGCAGGCAGTGAA 1013
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 969 AGTCAGAATACAGTAGGCCAGTTACAACCTAACTCAGGTATGTATCCTGCAGGCAGGGAA 1028
Query 1014 GAAGCCCTTGACAGAAAGAATCTTGGTTACCCCAGAGGATCCAGTTACATTAGTGGAGAA 1073
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1029 GAAGCCCTTGACAGAAAGAATCTCGGTTACCCCAGAGGATCCAGCTACATTAGTGGAGAA 1088
Query 1074 TCCGAAAACCAAAGTGTAAATTCGTTGGAAAGAATTCACATGAAGTTGCAGTGGATGAAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TCCGAAAACCAAAGTGTAAATTCGTTGGAAAGAATTCACATGAAGTTGCAGTGGATGAAA 1148
Query 1134 CTGCAACAAAATGCCACCCTGGAAGAGAATAAACGCATACCATATCAACAGACACCGCTG 1193
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1149 CTGCAGCAAAATGCCCCCCTTGAAGAGAATAAACGCATACCATATCAACAGACACCACTG 1208
Query 1194 TCGCGATCAACAGAAGAAACACATTATGTGGCGGCTCAAGGTGATCAATACAAGAGGCTT 1253
|| ||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||
Sbjct 1209 TCTCGATCAACAGAAGAAACACATTATGTGACGGCTCTAGGCGATCAATTCAAGAGGCTT 1268
Query 1254 CAGCAGCAAGATATTAGGGAACCAGTTATGGTGATGCAGCAGCAGCA--A-CAACAACAA 1310
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1269 CAGCAGCAAGATATGAGGGAACCAGTTATGGTGATGCAGCAGCAGCAGCAACAACAACAA 1328
Query 1311 CGTTCTCAATCTGCTAACACAAATGTGCTACCTGTCTCTACCATGAATGCATCCTTCACT 1370
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1329 CGTTCTCAATCCGCTAACACAAATGTGCTACCTGTCTCTACCATGAATGCATCCTTTACC 1388
Query 1371 GGagcagcagcagcagcaggcagcGGTTGGTACCCTGCAAATAGATCTGAGGCGGCCCAA 1430
|||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1389 GGAGCAGCAGCAGCAG--G-CAGCGGTTGGCACCCTGCAAATAGATCTGAGGCGGCCCAA 1445
Query 1431 TCTAACGGATACTTGCCCTCAAGAACTCTGCCTCCTAATGATCTGAACTCAAACCTGATG 1490
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1446 TCTAACGGATACTTGCCCTCAAGAAGTCTGCCTCCTAATGATCTGAACTCAAACCTGATG 1505
Query 1491 TACCAGCAACTTCAGTATCAACAATATCAAGGCCAAGGGAACAACAACGGTCACAGAATG 1550
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1506 TACCAGCAACTTCAGTATCAACAATATCAAGGCCAAGTGAACAACAATGGTCACAGAATG 1565
Query 1551 GCAGGAGCTTCTGCACCGCTTGCTGTGGCTCCAGCTGCTTCTCTTGGGCTCTTCTCGGGG 1610
|||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 GCAGGATCTTCTGCTCCGCCTGCTGTGGCTCCAGCTGCTTCTCTTGGGCTCTTCTCGGGG 1625
Query 1611 TTTGGTTCGTTGGCGGGATCATCTTCTTCTGGGCTGGACTGGAACGCGGATGGGTCATTG 1670
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1626 TTTGGATCACTGGCGGGATCATCTTCTTCTGGGCTGGACTGGAACACGGATGGGTCACTG 1685
Query 1671 GGGCATTTGGATTACAACAACATTGACTGGAGTCTAGATAAAGGCCTGGCTTGTCCGAGA 1730
||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||
Sbjct 1686 GGGCATTTGGATTACAACAACATCGACTGGAGTCTAGATAAAGGCCTAGCTTGTGTGAGA 1745
Query 1731 CCGAGCCAGCAGTACGTGGCAGCATCATCCCCATAT-GA--AGC-TCAT------ATGAA 1780
|| ||||||||||| ||||||||||||||||||||| | ||| |||| |||||
Sbjct 1746 CCTAGCCAGCAGTATGTGGCAGCATCATCCCCATATAGTGCAGCATCATCCCCGTATGAA 1805
Query 1781 -------TG---G-AAGGACAAGAAC-ATTGACGAATGGGAATGGGATGGGCGTGGCGAT 1828
|| | ||||||||||| || ||||||||||||||||||||| ||||| ||
Sbjct 1806 GCGCACATGAATGGAAGGACAAGAATGAT-GACGAATGGGAATGGGATGGGTGTGGCAAT 1864
Query 1829 GGGAGTGCAGGAAGCTGCTTTAGTGGGAAATGGGAGAGAGTGGACATCGCCTTTTGAGGG 1888
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1865 GGGAGTGCAGGAAGCTGCTTTAGTTGGAAATGGGAGAGAGTGGACATCGCCTTTTGAGGG 1924
Query 1889 TAAAGATCTGTTTAGTTTGTCTAGACAGTATGTGCCTCCTTCGCTTTAAAGGTGATAAAA 1948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TAAAGATCTGTTTAGTTTGTCTAGACAGTATGTGCCTCCTTCGCTTTAAAGGTGATAAAA 1984
Query 1949 TGCTCTTCT---AGAATAAAGAAAAATGAAAGgagagagagagagagaTGATGGATGATA 2005
||||||||| |||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1985 TGCTCTTCTTCTAGAATAAAGATAAATGAAAGGAGAGAGAGAGAG-G-TGATGGATGATA 2042
Query 2006 TGAGTTTGTGGTTACTGGTTTTATCAAGTGTTTCTTGCTTGTTTGCTCAGAATGGATCTT 2065
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2043 TGAGTTTGTGGTTACTGGTTTTATCAAGTGTTTCTTGCTTGTTTGCTCAAAATGGATCTT 2102
Query 2066 TCAAATTTCCTTATATTTTATATCCTCCC-ACATATTTAACATGGAGC 2112
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2103 TCAAATTTCCTTATATTTTATATCCTCCCCACATATTTAACATGGAGC 2150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104768537415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5