BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488056
Length=545
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12140.1 | Symbols: ATCYS1, CYS1 | cystatin-1 | chr5:3922909... 813 0.0
> AT5G12140.1 | Symbols: ATCYS1, CYS1 | cystatin-1 | chr5:3922909-3924023
REVERSE LENGTH=684
Length=684
Score = 813 bits (440), Expect = 0.0
Identities = 515/549 (94%), Gaps = 13/549 (2%)
Strand=Plus/Plus
Query 1 CGAAAATGGCGGATCAACAAGGAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 83 CGAAAATGGCGGATCAACAAGCAGGAACAATCGTCGGAGGAGTTCGCGATATTGATGCAA 142
Query 61 ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 ATGCTAATGATCTTCAAGTCGAGAGTCTCGCTCGTTTCGCTGTCGATGAGCATAACAAGA 202
Query 121 ACGAGAACGTGAGTCTGGAGTACAAGAGGCTCCTTGGTGCAAAAACACAGGTTGTTGCAG 180
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 203 ACGAGAACTTGACTCTGGAGTACAAGAGGCTCCTTGGTGCGAAAACACAGGTTGTGGCAG 262
Query 181 GAACAATGCACCATCTCACTGTGGAGGTGGCTGATGGTGAGACCAAGAAGGTCTACGAGG 240
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 263 GAACAATGCACCATCTAACTGTGGAGGTGGCTGATGGTGAGACCAATAAGGTCTATGAGG 322
Query 241 CCAAGGTTTTGGAGAAAGCATGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CCAAGGTTTTGGAGAAAGCTTGGGAGAATCTCAAGCAGTTGGAGAGTTTCAACCACCTTC 382
Query 301 GCGATGTTTAATCTGATAGC--TGAGCTTAT-TGCTGTCG-CTTGAGTGAGGTCCTTGTG 356
|||||||||||| ||| || ||||||| | | ||| || |||||||||||||||||||
Sbjct 383 ACGATGTTTAATCCGAT-GCCCTGAGCTT-TCT-CTG-CGGCTTGAGTGAGGTCCTTGTG 438
Query 357 TGCTCTCAGACCACGTGATAAGAGTTCCGGTTTAACCAAGTTAACTTCTTAAATAAGTGA 416
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 439 TGCTCTCAGACCACGTGATAAGAGTTCTGGTTTAACCAAGTTAACTTCTTTAATAAGTGA 498
Query 417 ATGTGAATCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTTTCCTTTG 476
| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 499 A----A-TCCAGTCCCATGTGTTTGAACTGGTATTGTGTGTATCTCTTGACTCTCGTTTG 553
Query 477 TGTATTGCTATTATCAAACTCTCACTTTATATCTATCTGCCTTGATTTTACCAAACATCA 536
||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||| |||
Sbjct 554 TGTATTGCTATTAGCAAACTCTCACTTTTTATCTATCTGCTTTGATTTTACAAAACTTCA 613
Query 537 TGACGAAGA 545
||| |||||
Sbjct 614 TGATGAAGA 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26121756440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5