BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488065 Length=1907 Score E Sequences producing significant alignments: (Bits) Value AT5G12220.1 | Symbols: | las1-like family protein | chr5:39501... 2961 0.0 > AT5G12220.1 | Symbols: | las1-like family protein | chr5:3950155-3953085 FORWARD LENGTH=1970 Length=1970 Score = 2961 bits (1603), Expect = 0.0 Identities = 1801/1897 (95%), Gaps = 11/1897 (1%) Strand=Plus/Plus Query 1 AAAACCCTAAAAGCTTACGA---GACTCATCAATGGAGGCGCTAGCGGGAATTGAAGCAG 57 |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| Sbjct 32 AAAACCCTAAAAGCTTTCGAGCCGACTCTTCAATGGAGGCGCTAGCGGGAATTGAAGCAG 91 Query 58 ACATCGAATCGTATTTCGGAGAGCAGGATCAACAGAAATCGTCATCGGACGGCTGCAAAC 117 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 92 ACATCGAATCGTATTTCGGAGAGCAGGATCAACAGAAATCGTCACCGGACGGCTGCAAAC 151 Query 118 AGGTCCCTTGGCTGAGTTGGGAAGAGTGGGACTCAGTGAGAGAGTCTCTCTTCTCTTCAT 177 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 152 AGGTCCCGTGGCTGAGCTGGGAAGAGTGGGACTCTGTGAGAGAGTCTCTCTTCTCTTCTT 211 Query 178 CTCTTGATAGAATCGCTTCTGCATTGGAAAGGGTTGCAACATGGCGAAGTCGAGGATCTC 237 ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 212 CTCCGGATAGAATCGCTTCTGCATTGGAAAGGGTTGCAACATGGCGAAGTAGAGGATCTC 271 Query 238 TTCCAGCACCTGTGGATGTTACTTGTTCCCTTATTGAAATTCAGCTCAAAGATGGCTTTA 297 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 272 TTCCAGCGCCTGTGGATGTTACTTGTTCCCTTATTGAAATTCAACTCAAAGATGGCTTTA 331 Query 298 TTCCGAGAGAGGAACAATCAGCAGATGCATTATATTCAGAGCATTTACTGCAGATGCTTT 357 ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 332 TTCCGAGGGAGAAACAATCAGCAGATGCATTGTATTCAGAGCATTTACTGCAGATGCTAT 391 Query 358 ATTGCATGGGTATACTCAGGCTTGTGAACTGTGTCATAGAAAAGACAAGGAGGAGAGAAG 417 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 392 ATTGCATGGGAATACTCAGGCTTGTGAACTGTGTCATAGAAAAGACAAGGAGGAGAGAAG 451 Query 418 ATGTTTCAATTGCGGATGCAGCTAGAGCAATCGGTATCCCACGTAAATTAATCGATCTTC 477 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 452 ACGTTTCAATTGCGGATGCTGCTAGAGCAATCGGTATCCCACGTAAATTAATCGATCTTC 511 Query 478 GTCATGAGGGTTCTCACCGTGAGCTCCCTGCACTCTCGGTGCTTCGGGATGCTGCAGATG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 GTCATGAGGGTTCTCACCGTGAGCTCCCTGCACTCTCGGTGCTTCGGGATGCTGCAGATG 571 Query 538 AGGCACTTGAATGGTTGAAATCTTATTATTGGGAGCCACAGAAGTATCAAATTCCCTTAA 597 |||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||||| Sbjct 572 AGGCTCTTGAATGGTTGAAATCGTATTATTGGGAGCAACAAAAGTATCAAATCCCCTTAA 631 Query 598 AGAGAGATGGAACGGCTAGCATCAGAAGAGAAGTCAAATCCAAACTCAGGAAACTTGCTT 657 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 AGAGAGATGGAACAGCTAGCATCAGAAGAGAAGTCAAATCCAAACTCAGGAAACTTGCTT 691 Query 658 TCTCCTTGCAGCTTAAGCATAATCCTCAATTTGACTCCCCTTTGGTCAAAGAAAACTGTT 717 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 692 TCTCCTTGCAGCTGAAGCGTAATCCTCAATTTGACTCCCCTTTGGTCAAAGAAAAATGTT 751 Query 718 CTAATAAAAGGATAAGGAAGATCGTAAGTAGCCTTGTTGAGTTATACCCTTCTTTCTCCG 777 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 752 CTAATAAAAGGATAAGGAAGATTGTAAGCAGCCTTGTTGAGTTATACCCTTCTTTCTCCG 811 Query 778 CAGAAATTTCATCTGTGCTCCTTGAATTCTTACTCAAGGCCTTGGATTCTTCAAAGTCGA 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 812 CAGAAATTTCATCTGTGCTCCTTGAATTCTTACTCAAGGCCTTGGATTCTTCAAAGTCGA 871 Query 838 CAGATCTTCAGAATAAGCCTGGGAAAGATTTCAGAGG-CTTCCTAGCA-GAATGGAAACC 895 ||||||||||||||||| ||||| |||||||||| || ||| |||| | ||||||||||| Sbjct 872 CAGATCTTCAGAATAAGGCTGGGCAAGATTTCAG-GGTCTTTCTAG-ATGAATGGAAACC 929 Query 896 TGTAATCATGGAGCTCTCAAATAGAGAACCCGAGTTGCTTTTGACTCTACTCAAGGAAGT 955 |||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 930 TGTAATAATGGAACTCTCAAATAGAGAACCTGAGTTACTTTTGACTCTACTCAAGGAAGT 989 Query 956 TCTTGATATGATCCAATATAATGAACGGAGAAGATATGAAACCGAAAAGCAAGCGGAAGA 1015 ||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||| Sbjct 990 CCTTGATATGATCCAAAATAATGAACGGAGAAGACATGAAACCGAAAAGCCAGTGGAAGA 1049 Query 1016 GGTTTCTCAAGTTGAGCAGGTCCCTTTCTTGTTTGCATGGCTTGTGAGTCTTCTCAATGG 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1050 GGTTTCTCAAGTTGAGCAGGTCCCTTTCTTGTTTGCATGGCTTGTGAGTCTTCTCAATGG 1109 Query 1076 GTCAAAGCATTTTCAAAGAAACAGTTCTGTAGAAGTGAAACCTCCAAGCATTTTCCTTAT 1135 |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1110 ATCAAAGCATTTTCAGAGAAACAGTTCTCTAGAAGTGAAACCTCCAAGCATTTTCCTTAT 1169 Query 1136 GGAACTTATACGTAGATGTCTTCTCTTGGGAGCCTTAGGAAACGAGCCGGTTCTGAAATC 1195 |||||||||||||||||||||| ||||||||||||||||| | |||| |||| ||||||| Sbjct 1170 GGAACTTATACGTAGATGTCTTGTCTTGGGAGCCTTAGGATATGAGCTGGTTTTGAAATC 1229 Query 1196 AGCATTCCTACTCGCAGAGATTGTGGGAGGCCGTGTTTTAAAGGAGAAGCTCATAAAACT 1255 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1230 AGCATTTCTACTCGCAGAGATTGTGGGAGGCCGTGTCTTAAAGGAGAAGCTCATAAAACT 1289 Query 1256 CCCTCTCATGCATAAAGGCTCTGCAATTGTTCCATTGGAACAGAGTTCTACTCTTGTAAC 1315 ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1290 TCCTCTTATGCATAAAAGCTCTGCAATTGTTCCATTGAAACAGAGTTCTACTCTTGTAAC 1349 Query 1316 AGCTCCTACAACGCTCCTTGAACAAGAGAAGAATCTCGGTAATGCAGGCAAGAGACTTGA 1375 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1350 AGCTAGTACAACGCTCCTTGAGCAAGAGAAGAATCTCGGTAATGCAGGCAAGAGACTTGA 1409 Query 1376 GTTCGTCAAACTTCAACTCTCAAAGAAAAAAGGTATCGACACAGACAAAACCGGTAACAG 1435 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1410 GTTCGTCAAACTTCAACTCTCAAAGAAGAAAGGTATTGACACAGACAAAACCGGTAACAG 1469 Query 1436 ATGGAGAAAGGCAAAAACATGGAGCCCTTGCCCAATTGGCATGTTGCCTCGGATCATTGG 1495 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1470 ATGGAGAAAGGCAAAAACATGGAGCCCTTGTCCAATTGGTATGTTGCCTCGGATCATTGG 1529 Query 1496 ATCTTCTGGACGTTTACCTCTTCTTGACTATCACAATGCTCAGAGCATCTCAAAACAAGC 1555 |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| Sbjct 1530 ATCTTCTGGACGTTTACCTCTTCTTGACAATCAGAATGCTAAGAGCATCTCAAAACAAGC 1589 Query 1556 ACAAGGTAACAACAATGCCAAGAGAGGAACTGAGTGTAATAGAAAGCAATTGGAGAAATC 1615 |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| Sbjct 1590 ACAAGGTAACAACAATGCGAAGAGAGGAGCTGAGTGTAATAGAAATCAATTGGAGAAATC 1649 Query 1616 ACCATGCAAGCGAGCAAGGAAGAGTGCAGAAGATTCTGACA-CAAATGATGTGACATTGG 1674 |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| Sbjct 1650 GCCATGCAAGCGAGCAAGGAAGAGTGCAGGAGATTCTGA-ATCAAATGATGTGACATTGG 1708 Query 1675 AAGCATACGAGGAAGAAGCTGAGATGGAAATAGAACATGCATATGAGGAAACTGAAGCTG 1734 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1709 AATCATACGAGGAAGAAGCTGAGATGGAAATAGAACATGCATATGAGGAAACTGAAACTG 1768 Query 1735 TAGCAGAAGAGAATCTGATGTGGAATGATAAAGAGGAAAGCAGAAGCTGTCTTATGATAG 1794 ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| Sbjct 1769 TAGCAGAAGAGAATCTGATGTGGAATGATGAAGAGGAAAGTAGAAGCTGCCTTATGATAG 1828 Query 1795 ATGGTGAATGGAAAAGAGTCAATGAAGGAGAACTATCGGGGATGGCTTCGAAAATTACAA 1854 ||||||||||||||||||| ||||| |||||||| |||||||||||||| | |||||| Sbjct 1829 ATGGTGAATGGAAAAGAGTAAATGATGGAGAACTCTCGGGGATGGCTTCTAGTGTTACAA 1888 Query 1855 TTTGTGTCTGAGATTTCTG-CAGATGTAACCATATAA 1890 ||||||| ||||||||| | ||||||||| ||||||| Sbjct 1889 TTTGTGTTTGAGATTTC-GACAGATGTAATCATATAA 1924 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94427225145 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5