BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488121 Length=1198 Score E Sequences producing significant alignments: (Bits) Value AT5G13050.1 | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloli... 1554 0.0 AT5G13030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 87.9 2e-16 > AT5G13050.1 | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloligase | chr5:4136556-4138792 REVERSE LENGTH=1271 Length=1271 Score = 1554 bits (841), Expect = 0.0 Identities = 965/1024 (94%), Gaps = 12/1024 (1%) Strand=Plus/Plus Query 1 TTTTGTCGTTTATGGTTTGGAATAATTTCCCTGCAG-tttttttt-ttCTTAAAGAA-AG 57 |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | Sbjct 2 TTTTGTCGTTTATGGTTTGGAATAATTTCCCTGCAGTTTTTTTTTCTTCTTAAAGAACA- 60 Query 58 aaaaaaaaaCGGGAGCTTGAAATGATTGGAGCTCGCGTCTTTTGTATCAGCACGACAGCA 117 |||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 61 AAAAAAAAACGGGAACTTGTAATGATTGGAGCTCGCGTCTTTTGTATCACCACGACAGCA 120 Query 118 CTACAAAGATCATCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTA 177 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTACGAAGATCACCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTA 180 Query 178 TTATCA-C--C-CG--CAATCGTCGCCATGAGCACCACCAGCAAAAGCCAAGAGGAACTC 231 | | || | | | | |||||||||||||||||||||||||||| ||||||||||||| Sbjct 181 TCACCAGCTACTAGACCCATCGTCGCCATGAGCACCACCAGCAAAAACCAAGAGGAACTC 240 Query 232 GATTCCATTTTCAAGCAGAAACGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAGGCC 291 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 241 GATTCCATTTTCAAGCAGAAGCGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAAGCC 300 Query 292 ATGGACCCTTCTCTCCGAACCCAACAAGATGAGTCCATTCAAAACACTCTTCTTGAAGCT 351 ||||||||||||||||||||||||||||||||| | ||||| || ||| ||||||||||| Sbjct 301 ATGGACCCTTCTCTCCGAACCCAACAAGATGAGGCAATTCAGAAGACTGTTCTTGAAGCT 360 Query 352 CCCTGGTTCAAATCATGTAAGCGATTGTGTGCTTACATTAGCTGCAAGTCTCTCAATGAA 411 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 361 CCCTGGTTCAAATCATGTAAGGGATTGTGTGCTTACATTAGCTGCAAATCTCTCAATGAA 420 Query 412 GTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAAAATCCTGATTCAAATACTCAGAAA 471 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 421 GTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAACATCCAGATTCAAATACTCAGAAA 480 Query 472 AAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGCAACATGCGTATGCTGCACATTTCT 531 ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||| Sbjct 481 AAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGTAACATGCGCATGTTGCACATATCT 540 Query 532 CATATGGAAGACCTTATTGCAAACTCGATGAACATTTTGGAACCAGCTCCTGTTGATGCC 591 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 CATATGGAAGACCTTGTTGCAAACTCAATGAACATTTTGGAACCAGCTCCTGTTGATGCC 600 Query 592 CAAGGGAATGAGCGTGAAGATGTGTTGCAAGCAGATGAACCGATAGATTTGTTCATCTTG 651 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 601 CAAGGGAATGACCGTGAAGATGTGTTGCAAGCAGATGAACCGATCGATTTGTTCATCTTG 660 Query 652 CCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGAC 711 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGAC 720 Query 712 ACTTTCTTGAAGAGATACCAGGATCGTGCAAAGGAGAAGTATTGGAGATATCCACTTATG 771 ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| Sbjct 721 ACTTTCTTGAAGAGATATCAGGACCGTGCAAAGGAGAAGGGTTGGAGATATCCACTTATG 780 Query 772 GTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGCAAGTATTCCTGTAACACCGAAT 831 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 781 GTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGGAAGTATTCCTGTAACACCTAAT 840 Query 832 GATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATTACCCCTCGTGCT 891 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 841 GATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATCACCCCTCGTGCT 900 Query 892 ATCGAGAGAATGTGAGCTCAACAGCTTGTGTTTGGAGCTGACACTCAGATGATTCGTTAG 951 | |||||| ||||||||||| |||||||||||||||||||| ||||||| || || || Sbjct 901 ACCGAGAGCATGTGAGCTCAGGAGCTTGTGTTTGGAGCTGACCCTCAGATAATCCGA-AG 959 Query 952 TT-GGCGCTTGAAGGCTACATTCTGGAATTTGCTAATTCAGTATCAGCTTCTGTAGTTGC 1010 | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 960 GTCGGCGCTTGAAGGCTACATTCTGGAAGTTGCTAATTTAGTATCAGCTTCTGTAGTTGC 1019 Query 1011 CACT 1014 |||| Sbjct 1020 CACT 1023 Score = 97.1 bits (52), Expect = 3e-19 Identities = 166/215 (77%), Gaps = 32/215 (15%) Strand=Plus/Plus Query 1015 TCTTGTATGATGAGATATGAAAGAAGATTGA-TCCAATTGCCTCTCACCTGTTTATGCCA 1073 ||||||||||| | ||||||||||||||| | |||||| | ||||||||||||||| ||| Sbjct 1056 TCTTGTATGATAAAATATGAAAGAAGATT-AGTCCAATGGTCTCTCACCTGTTTATTCCA 1114 Query 1074 TATCAA-----Gt----t--t-----t-ttttt-ATCGCACAAGATGTTACTGGTTCTTG 1115 |||||| || | | | ||||| |||||| || ||| || ||| ||||| Sbjct 1115 TATCAAGTTTTGTCGGGTAATAACAATCTTTTTAATCGCATAAAATGATATTGGCTCTTG 1174 Query 1116 GGTTCTTTTCTTGAG-----C-T-----T-TATATGTACTCAAATCTTTATTCAATGTAA 1163 ||||||||| ||||| | | | |||||||||||||||||||||||||||||| Sbjct 1175 GGTTCTTTTGTTGAGCTTCTCATGGAAATCTATATGTACTCAAATCTTTATTCAATGTAA 1234 Query 1164 AAACAAATTAGAGAAAACATCGAAGTTTTTCTTGT 1198 ||||||| | ||||||| | ||||||||||||| Sbjct 1235 AAACAAAATCCTGAAAACAGCAAAGTTTTTCTTGT 1269 > AT5G13030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins in 1211 species: Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134; Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink). | chr5:4133204-4136688 FORWARD LENGTH=2141 Length=2141 Score = 87.9 bits (47), Expect = 2e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1134 TATATGTACTCAAATCTTTATTCAATGTAAAAACAAATTAGAGAAAACATCGAAGTTTTT 1193 ||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||| Sbjct 2075 TATATGTACTCAAATCTTTATTCAATGTAAAAACAAAATCCTGAAAACAGCAAAGTTTTT 2016 Query 1194 CTTGT 1198 ||||| Sbjct 2015 CTTGT 2011 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58835038740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5