BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488128 Length=1051 Score E Sequences producing significant alignments: (Bits) Value AT5G13120.1 | Symbols: ATCYP20-2, CYP20-2 | cyclophilin 20-2 | ... 1064 0.0 > AT5G13120.1 | Symbols: ATCYP20-2, CYP20-2 | cyclophilin 20-2 | chr5:4162503-4164784 REVERSE LENGTH=1055 Length=1055 Score = 1064 bits (576), Expect = 0.0 Identities = 616/635 (97%), Gaps = 4/635 (1%) Strand=Plus/Plus Query 1 TTTTGAGCTCCAATGGCGGCCTTATCGATGACTCTGTCAAATCCGAAGTCGCTGTCAGCT 60 |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| Sbjct 53 TTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCAAATCCGAAGTCGCTCTCAGCT 112 Query 61 GCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTCTCACATCTACCTCTTTCCGATTG 120 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 113 CCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTG 172 Query 121 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCGTCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 173 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCA 232 Query 181 TCGCTCCTCCTTCACACGTCTTCTACCAAAAGAAACCACCGCTGCTTCTC-GATTCAATC 239 |||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||| Sbjct 233 TCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTG-TTCAATC 291 Query 240 CAATTCTGAGATTGTTAGC-GAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 298 |||| ||||| | |||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 292 CAATGCTGAGGTGGTTA-CTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 350 Query 299 TAAGTGTTGGAAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 358 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351 TAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 410 Query 359 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 470 Query 419 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 530 Query 479 TTGAAAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 TTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 590 Query 539 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTGAGTATGGCAAATGCTGGCCCTAATA 598 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 591 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATA 650 Query 599 CAAATGGAAGTCAGTTCTTTATCTGCACTGTTAAG 633 ||||||||||||||||||||||||||||| ||||| Sbjct 651 CAAATGGAAGTCAGTTCTTTATCTGCACTATTAAG 685 Score = 425 bits (230), Expect = 3e-118 Identities = 334/377 (89%), Gaps = 35/377 (9%) Strand=Plus/Plus Query 701 ACGTCATGGTTGGACGGAAGGCATGT-G-G-T-------GTAATAGAAGGAATGGAAGTG 750 |||||||||||||||||||| ||||| | | | ||||||||||||||||||||| Sbjct 686 ACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTG 745 Query 751 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 746 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 805 Query 811 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGCAAGATCATT-AACCAAA 869 |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 806 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAA 865 Query 870 ACCTTGTAGACATGAGATGGAGCCTGTGTTTGCACTTTACAACCCTTTCTTTTGTGTAAT 929 | ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| Sbjct 866 ATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAAT 925 Query 930 GGATTTGTATCCCCTTCTTCCTGACCTCCCAAAAATTTAAGAAAGAAATAGT-TT----T 984 ||||||||||||||||||||| | |||| ||||||||||||||||| || | Sbjct 926 GGATTTGTATCCCCTTCTTCC--A------AAAA-TTTAAGAAAGAAATAGTATTCCGCT 976 Query 985 G----------AACTCAGATTTCATTTCATTGGTTTGTTTCGAAATTAACCAATGTGTTA 1034 | |||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 977 GCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTA 1036 Query 1035 TAGCGGTTCAGTTGCAT 1051 ||||||||||||||||| Sbjct 1037 TAGCGGTTCAGTTGCAT 1053 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51540234822 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5