BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488142
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13260.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2953 0.0
> AT5G13260.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48860.2);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:4243028-4246882 FORWARD LENGTH=1955
Length=1955
Score = 2953 bits (1599), Expect = 0.0
Identities = 1776/1861 (95%), Gaps = 13/1861 (1%)
Strand=Plus/Plus
Query 1 CAAGAAGAAGAAGATCTAGGTCTTGCATCTCTCTCTTCATTACAATGGAGCGAGCACGAA 60
||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 95 CAAGAAGAAGAAGATCTAGGTTTTGCA--TCTCTCGTCATTACAATGGAGCGAGCACGAA 152
Query 61 CCGAAAGCCCTAGCTACTTCCGTCAATGGAGCGGCGATTCAGGTTCCACCAATGCCGCCG 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 153 CCGAAAGCCCTAGCTACTTCCGTCAATGGAGCGGCGATTCAGGTACCACCAATGCCGCCG 212
Query 121 CCGTAGCTCCTTCTTCTCCGGCGCGTCATCACCACGCTCGATCTTCTTCCGTCACTAATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CCGTAGCTCCTTCTTCTCCGGCGCGTCATCACCACGCTCGATCTTCTTCCGTCACTAATA 272
Query 181 TGTCTAACGTCAAACGAGCTCAAAACGTCGCTGCTAAAGCCGCTGCTCAAAGACTTGCTA 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 273 TGTCTAACGTCAAACGAGCTCAAAACGTTGCTGCTAAAGCCGCTGCTCAGAGACTTGCTA 332
Query 241 AAGTCATGGCTTCACAGACCAACAatgatgacgacgatgacgatgatgatgatgaaatcg 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 333 AAGTCATGGCTTCTCAGACCAACAATGATGACGACGATGACGATGATGATGATGAAGTCG 392
Query 301 gtggtgatgatTTAGGTTTCCGATATGGTGCTCCTCCTCCTCTTTCCTTCACTAGAAATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GTGGTGATGATTTAGGTTTCCGATATGGTGCTCCTCCTCCTCTTTCCTTCACTAGAAATC 452
Query 361 CTTCTTCCACAATTGCTAAACCTAAACCTGTTGCTTCTGCTGTTGCTGTTCCTCCTCCCA 420
|||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| |
Sbjct 453 CTTCTTCCACAATTGCTAAACCTAAACCTGTTGCTTCTTCTGCTGTTGTTCCTCCTCCTA 512
Query 421 AGATCTCTAGATCTTCCTCTCCTGCGAACTCCCCAGCCGTGTCTGTTCGGGCATCGCAGC 480
||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |
Sbjct 513 AGATCTCTAGATCTTCCTCCCCTGCGAACTCTCCAGCTGTGTCTGTTCGGGCATCGCAAC 572
Query 481 CGCCTGTTCCGCCGAGTAAACTGTCTCAAAGGCATCAAACTACCAATCCATCACCGGTTG 540
|||||||||| |||||||||||| ||| |||||||||||||||| | ||| ||||
Sbjct 573 CGCCTGTTCCACCGAGTAAACTG------AGGAATCAAACTACCAATCCTTTACCAGTTG 626
Query 541 CAACTCCTAAGACTGAAAAGAGGGTTTTAGCTGATATTGGTCATTTTAATGGAAATGATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 627 CAACTCCTAAGACTGAAAAGAGGGTTTTAGCTGATATTGGTCATTTTAATGGAAAAGATT 686
Query 601 CGAGAGATCAGCACGAAGCATCCGCACTTCGTGATGAACTTGATATGCTGCAAGAGGAGA 660
||| ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 687 CGAAAGATCAGCATGAAGCATCTGCACTTCGTGACGAACTTGATATGCTGCAAGAGGAGA 746
Query 661 ATGACAGTATTCTTGAAAAGCTTAGGCTTGAGGATGAGAGATGCAAGGAAGCAGAAGCCA 720
|||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 747 ATGATAGTATACTTGAAAAGCTTAGGCTTGAGGATGAGAAATGCAAGGAAGCAGAAGCTA 806
Query 721 GGGTGAGAGAGCTTGAAAAACAGGTAACTTCTCTGGGAGAAGGTGTATCATTGGAAGCTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GGGTGAGAGAGCTTGAAAAACAGGTAACTTCTCTGGGAGAAGGTGTATCATTGGAAGCTA 866
Query 781 AACTTCTGAGCCGAAAAGAAGCTGCTTTGCGTCAAAGAGAGGCGGCCCTCAAAGATGCAA 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 867 AACTTCTGAGCCGAAAAGAAGCAGCTTTGCGTCAAAGAGAGGCGGCCCTCAAAGATGCAA 926
Query 841 GGCAGAATAGAGATGGGACTAATAAAGAGACTACTGTTCTTCGGTCTCAAGTAGAGAATG 900
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 927 GGCAGAATAGAGATGGGACTAATAGAGAGACTACTGCTCTTCGGTCTCAAGTAGAGACTG 986
Query 901 CAAAACTCGAGACCGCTGGTATAGTAGCACAACTTCAAGGAGCAGAATCTGAAGTCAACG 960
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 987 CAAAACTGGAGACCGCTGCTATAGTAGCACAACTTCAAGGAGCAGAATCTGAAGTCAATG 1046
Query 961 CTCTACGGACAATGACGCATAGAATGATATTGACCCAAAAAGAGATGGAGGAAGTTGTTC 1020
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1047 GTCTACGGACAATGACGCATAGAATGATATTGACCCAAAAGGAGATGGAGGAAGTTGTTC 1106
Query 1021 TTAAACGGTGCTGGCTAGCTCGGTATTGGGGTTTGGCTGCCAGATATGGCATATGTTCGG 1080
|||| ||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||
Sbjct 1107 TTAAGCGGTGCTGGCTAGCTCGGTATTGGGGTCTAGCTTCCAGATATGGAATATGTTCGG 1166
Query 1081 ATATTGCTACATCGAAGTACGAATACTGGTCATCTCTGGCACCTCTTCCTTTTGAAATTG 1140
|||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1167 ATATAGCTACGTCCAAGTACGAATACTGGTCATCTCTGGCTCCTCTTCCTTTTGAAATTG 1226
Query 1141 TGCTGTCAGCTGGGCAGAAGGCTAAAGAAGAAAGTTGGGAAAAAGAATCTGAGGAGAACG 1200
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TGCTGTCAGCTGGACAGAAGGCTAAAGAAGAAAGTTGGGAAAAAGAATCTGAGGAGAACG 1286
Query 1201 AGAAGAGGAGCCAGCTCGCTCAAGATATAAATGATCTAACAGGAGAGGGAAATATTGAAA 1260
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1287 AGAAGAGGAGCCAGCTCGTTCAAGATATAAATGATCTAACAGGAGAAGGAAATATTGAAA 1346
Query 1261 GTATGCTCTCTGTGGAAATGGGTCTAAAGGAGCTAACTTCTTTGAAGGTTGAAATTGCCA 1320
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1347 GTATGCTCTCTGTGGAAATGGGTCTAAAGGAGCTAACTTCTTTAAAGGTTGAAGTTGCCA 1406
Query 1321 TTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACTACTCGGCTGTCTGATATCGAGT 1380
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1407 TTACTATTACATTAGCCCAGCTAAGGTTGGCCAATACTACTCGACTGTCTGATATCGAGT 1466
Query 1381 TAAAATCACCAGGTGGTCCTAAGATTACGGAGGCCCTTGAATTGAGTCAAGAAGAGTCTG 1440
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1467 TAAAATCACCAGGTGGTCCTAAGATTACGGAGACACTTGAATTGAGTCAAGAAGAGTCTG 1526
Query 1441 AGGATGTTCTCTTCAAGGAGGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 AGGATGTTCTCTTCAAGGAGGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTG 1586
Query 1501 GCATAGAAGTGGACATTGCGAGAGAACGTCTTAGATTCTGGATCAGCAGGAGCGCACACT 1560
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1587 GCATAGAAGTGGACACTGCGAGAGAACGTCTTAGATTTTGGATCAGCAGGAGCGCACATT 1646
Query 1561 CTCCATCTTCACATGACGCCATGGAAGTTGAACAAGGTCTAACAGAGCTAAGAAAGCTGC 1620
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1647 CTCCATCTTCACATGACGCCATGGAAGTTGAGCAAGGACTAACAGAGCTAAGAAAGCTGC 1706
Query 1621 GGATAGAACGTAGATTGTGGGAAGCCTCTAGGTCCAGCCAGTAAGTAGTGACCTTGGGGA 1680
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1707 GGATAGAACGTAGATTGTGGGAAGCCTCCAGGTCCAGCCAGTAAGTAGTGACCTTGGGGA 1766
Query 1681 CCTCAAGATCCCAGAGCAGTCATGTTACCACATCTTTAACAGTACTGTATATCGTACATG 1740
|||| ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 1767 CCTCGGGATCCCAGAACAGTCTTGCTACCACAGCTTTAACAGTACTGTATATCGTACATG 1826
Query 1741 CTTTCTTCCTC-TGTGGTTCATGTACTTTGCAGTCAGAAAAATGTTTAATCCAGTTTTGT 1799
|||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1827 CTTTCTTC-TCGTGTGGTTGGGGTACTTTGCAGTCAGAAAAATGTTT---CCAGTTTTGT 1882
Query 1800 GAACCGAAGAATTGTATTACACGCACTACTTTTGACATATAATATATCCACGTTTCCACG 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1883 AAACCGAAGAATTGTATTACACGCACTACTTTTGACATATAATATATCCACGTTTTCACG 1942
Query 1860 T 1860
|
Sbjct 1943 T 1943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5