BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488160
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13410.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1312 0.0
> AT5G13410.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr5:4299705-4301780 REVERSE LENGTH=970
Length=970
Score = 1312 bits (710), Expect = 0.0
Identities = 772/803 (96%), Gaps = 0/803 (0%)
Strand=Plus/Plus
Query 1 TTAAGTTTCAGTCTAATGGCGTCAATTTCGTCCTTTGGCTGCTTCCCTCAATCCACAGCG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTAAGTTTCACTCTAATGGCGTCAATTTCGTCCTTTGGCTGCTTCCCTCAATCCACAGCG 119
Query 61 CTCACCGGAACTTCCTCCACCACCAGATGCCGGACGACTGTGGCTGCTCGGTTAGCTGAC 120
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 CTCGCCGGAACTTCCTCCACCACCAGATGCCGGACGACTGTGGCTGCTCGATTAGCTGAC 179
Query 121 CAATCAGATGAATTCTCTCCTCTTCGTTCTTCTGGTGGGAATTGTGGCTGTGGTCATAAT 180
||||||||||| ||| ||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 180 CAATCAGATGACTTCGCTCCTCTTCGTTCTTCTGGTGGGAATTGTGGATGTGTTAATAAT 239
Query 181 TCTGGAGAGTTTGATCGGAGAAAGTTGTTGCTTTCTTCTGTTGGTTTATTGATTGGAGCC 240
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 240 TCTGGAGAGTTTGATCGCAGAAAGTTGTTGGTTTCTTCTGTTGGTTTGTTGATTGGAGCA 299
Query 241 TTGTCTTACGATGCTAAAGATGGAGACTTTGCCTCAGCTTCTCAATTCGCTGACATGCCA 300
||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 300 TTGTCATACGATTCTAAAGATGGAGACTTTGCATCAGCTTCTCAATTTGCTGACATGCCA 359
Query 301 GCGCTTAAAGGGAAGGATTATGGCAAAACCAAAATGAAGTATCCAGATTATACAGAAACA 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 GCGCTTAAAGGGAAGGATTATGGCAAAACAAAAATGAAGTATCCAGATTATACAGAAACA 419
Query 361 CAATCTGGTCTTCAGTATAAGGATTTGCGACTAGGAACTGGGCCTATAGCAAAGAAGGGA 420
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 420 CAGTCTGGTCTTCAGTATAAGGATTTGCGAGTAGGAACTGGGCCTATAGCAAAAAAGGGA 479
Query 421 GACAAAGTTGTGGTTGATTGGGACGGTTACACCATAGGTTACTATGGCCGCATATTTGAA 480
||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 480 GACAAAGTTGTGGTTGACTGGGACGGTTACACAATAGGGTACTATGGACGCATATTTGAA 539
Query 481 GCTCGCAACAAAACAAAAGGGGGTTCTTTTGAGGGGGATGATAAGGAGTTTTTCAAATTT 540
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 540 GCTCGCAATAAAACAAAAGGGGGTTCTTTTGAGGGCGATGATAAGGAATTTTTCAAATTT 599
Query 541 ACCTTGGGATCCAATGAGGTGATACCTGCTTTTGAGGAGGCTGTCTCTGGGATGGCTCTC 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACCTTAGGATCCAATGAGGTGATACCTGCTTTTGAGGAGGCTGTCTCTGGGATGGCTCTC 659
Query 601 GGTGGTATCAGAAGGATAATTGTACCGCCCGAGCTAGGATACCCGGATAATGACTACAAC 660
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 660 GGTGGTATCAGAAGGATAATTGTACCGCCAGAACTAGGATACCCGGATAATGACTACAAC 719
Query 661 AAGAGTGGGCCGAGGCCGATGACTTTCTCTGGACAACGTGCATTAGATTTTGTGCTGAGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGAGTGGGCCGAGGCCGATGACTTTCTCTGGACAACGTGCATTAGATTTTGTGCTGAGG 779
Query 721 AACCAAGGGCTCATAGACAAGACACTTCTCTTTGATGTTGAACTCCTCAAAATTGTACCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACCAAGGGCTCATAGACAAGACACTTCTCTTTGATGTTGAACTCCTCAAAATTGTACCC 839
Query 781 AACTGATGTAACATCGACAGTCT 803
|| ||||||||||||||||||||
Sbjct 840 AATTGATGTAACATCGACAGTCT 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39082166366
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5