BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488163
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13440.1 | Symbols: | Ubiquinol-cytochrome C reductase iron... 1644 0.0
AT5G13430.1 | Symbols: | Ubiquinol-cytochrome C reductase iron... 1182 0.0
> AT5G13440.1 | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur
subunit | chr5:4308129-4310181 REVERSE LENGTH=1286
Length=1286
Score = 1644 bits (890), Expect = 0.0
Identities = 1107/1205 (92%), Gaps = 42/1205 (3%)
Strand=Plus/Plus
Query 27 aaaGGACTAATCTTTTTGTTTGCATCGGCCAATCCATCCCTAACCTTACGA-T-TGTGTT 84
|||||||||||||||||||||||||||||| || | | |||||||||||| | ||||||
Sbjct 56 AAAGGACTAATCTTTTTGTTTGCATCGGCC-AT-C-T--CTAACCTTACGATTGTGTGTT 110
Query 85 CTTGCTTTGAGCGAAACCCTAGATTCAGCCATAATCCATTTGAGCAGAGATGCTGCGAGT 144
||||||||||||||||||||||| || | | ||| |||||||||||||||||||||||||
Sbjct 111 CTTGCTTTGAGCGAAACCCTAGAATCGGTCTTAACCCATTTGAGCAGAGATGCTGCGAGT 170
Query 145 AGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCTTCGACGGCGACCTCCTTCGTCCT 204
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 171 AGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGATCATCGACGGCGACCTCCTTCGTCCT 230
Query 205 TTCCCGTGACCATACCCTTTCCGATGGCGGAAACTCCCCTTCCGCCTCTAGATCTGTCCC 264
||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||
Sbjct 231 TTCCCGTGACCATACCCTTTCCGATGGAGGCAACTCCTCTTCCGCTTCTAGATCTGTCCC 290
Query 265 CTCTGCAGATCTCTCATCTTTCAATTCTTACCACCGCAGCCTTATTAGAGGGTTCGCTTC 324
|||||||||||||||||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 291 CTCTGCAGATCTCTCATCTTTCAATTCTTACCACCGGAGCGTTATAAGAGGTTTTGCTTC 350
Query 325 TCAAGTCCTTACTCAAGGAAATGAGATAGGTTTTGCTTCGGAAGTCCCAGCCACTGTCGA 384
||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 351 TCAAGTCATTACTCAGGGAAATGAGATAGGTTTTGGTTCGGAAGTCCCAGCCACAGTCGA 410
Query 385 AGCTGTCAAAACACCTAACTCAAAGATTGTCTATGACGACCATAACCATGAGCGTTACCC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGCTGTCAAAACACCTAACTCAAAGATTGTCTATGACGACCATAACCATGAGCGTTACCC 470
Query 445 ACCTGGTGACCCTAGCAAACGTGCATTTGCCTATTTTGTCTTGTCGGGTGGGAGGTTTGT 504
|||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 471 ACCTGGTGACCCTAGCAAGCGGGCATTCGCCTATTTTGTCTTGTCGGGTGGAAGGTTTGT 530
Query 505 TTATGCCTCTGTTATCCGGCTGCTTGTTCTGAAGCTTGTTGTGAGTATGTCTGCAAGTAA 564
||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 531 TTATGCCTCTGTTCTCCGCCTGCTTGTTCTGAAGCTTATTGTGAGCATGTCTGCAAGTAA 590
Query 565 AGATGTCCTTGCCCTTGCATCCCTTGAGGTTGACCTAGGGAGCATCGAACCAGGAACTAC 624
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 591 AGATGTCCTTGCCCTTGCATCCCTCGAGGTTGACCTAGGGAGCATAGAACCAGGAACTAC 650
Query 625 CGTGACAGTCAAGTGGCGAGGAAAGCCAGTCTTCATCAGGCGAAGAACAGAAGATGACAT 684
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 651 CGTGACAGTCAAGTGGCGTGGAAAGCCCGTCTTCATCAGGCGAAGAACAGAAGATGACAT 710
Query 685 CAAGCTGGCCAATAGTGTGGATGTTGGATCCTTGAGGGACCCACAAGAAGACTCGGTTAG 744
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 711 CAAGCTGGCCAATAGTGTGGATGTTGGATCCCTGAGGGACCCACAAGAAGACTCGGTTAG 770
Query 745 AGTCAAGAATCCTGAATGGTTAATCGTGGTTGGAGTATGCACTCATTTGGGGTGCATCCC 804
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 771 AGTCAAGAATCCAGAATGGTTGATCGTGGTTGGAGTATGCACTCATTTGGGGTGCATCCC 830
Query 805 CTTGCCTAATGCTGGTGATTATGGCGGTTGGTTTTGTCCGTGTCACGGTTCGCATTATGA 864
|||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 831 CTTGCCTAATGCTGGTGATTATGGTGGTTGGTTTTGTCCGTGTCACGGATCACATTACGA 890
Query 865 TATCTCCGGAAGAATTAGGAAAGGTCCTGCACCATACAACCTGGAAGTACCAACCTACAG 924
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 891 TATATCTGGAAGAATTAGGAAAGGTCCTGCACCATACAACCTGGAAGTACCGACCTACAG 950
Query 925 CTTCTTGGAAGAGAATAAGTTACTCATTGGTTGATGAGTAAAG--------TC----T-T 971
|||||||||||||||||| ||||||||||||| |||| ||||| || | |
Sbjct 951 CTTCTTGGAAGAGAATAAATTACTCATTGGTTAATGAATAAAGCACAACAGTCCGAGTGT 1010
Query 972 C--G-TCTGAATGATCTTAAATCTGTTTTTGTTTTAATATTTTCCGGCATTTTAGCGTGC 1028
| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1011 CATGGTCTGGATGATCTTAAATCTGTTTTTGTTTTTATATTTTCCGGCATTTTAGCGTGC 1070
Query 1029 AAGGTCGCTTCCCTCACACTTTGGACTCTCAGCAAGA-TTGTCTTGTTTTGCTGAATAAT 1087
||| |||||| ||||||||||||| ||| ||||| | ||| ||||||||||||||||||
Sbjct 1071 AAGTTCGCTTTCCTCACACTTTGGGCTC--AGCAAAAATTGGCTTGTTTTGCTGAATAAT 1128
Query 1088 ACAAACTTGTCATTGTATGAC-------C-GTCTCATCTGGTGAAA-TACACTGTTCATA 1138
||||||||||||||||||||| | |||||||||||||||| |||| ||||||||
Sbjct 1129 ACAAACTTGTCATTGTATGACTTAGTATCTGTCTCATCTGGTGAAAATACATTGTTCATA 1188
Query 1139 G--C-----CTCTGTTTATTATTTGAAAAGAGTTTTGAATAGTATCATGCCTGTTTTTCT 1191
| ||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1189 CTTCATAGTCTCTGTTTATTATTTGAAAAGAGTTTTGAATAGTATCATCCCTATTTTTCT 1248
Query 1192 TTTGT 1196
| |||
Sbjct 1249 TATGT 1253
> AT5G13430.1 | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur
subunit | chr5:4305125-4307513 REVERSE LENGTH=1222
Length=1222
Score = 1182 bits (640), Expect = 0.0
Identities = 784/852 (92%), Gaps = 16/852 (2%)
Strand=Plus/Plus
Query 121 CATTTGAGC--AGAGATGCTGCGAGTAGCAGGAAGGAGGCTTTTTTCTGTTTCGCAGAGA 178
||||||||| |||||||||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 100 CATTTGAGCTGAGAGATGCTGCGTGTAGCAGGGAGGAGGCTTTTCTCTGTCTCGCAGAGA 159
Query 179 TCTTCGACGGCGACCTCCTTCGTCCTTTCCCGTGACCATACCCTTTCCGA---TGGCGGA 235
|||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 160 TCTTCGACTGCGACCTCCTTCGTCGTCTCCCGTGACCATACCCTTTCCGATGGTGGCGGC 219
Query 236 AACTCCCCTTCCGCCT-CTAGATCTGTCCCCTCTGCAGATCTCTCATCTTTCAATTCTTA 294
||||| |||| | || | ||||| ||||||||||||| || || || | |||||
Sbjct 220 GACTCCTCTTCAG-CTCCCAGATCCCTCCCCTCTGCAGA----TC-TC--TC-A-TCTTA 269
Query 295 CCACCGCAGCCTTATTAGAGGGTTCGCTTCTCAAGTCCTTACTCAAGGAAATGAGATAGG 354
|||||| |||||||| ||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 270 CCACCGTAGCCTTATCAGAGGCTTCTCTTCTCAAGTCCTTGCTCAAGGAAATGAGATAGG 329
Query 355 TTTTGCTTCGGAAGTCCCAGCCACTGTCGAAGCTGTCAAAACACCTAACTCAAAGATTGT 414
||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 330 TTTTGGTTCAGAAGTCCCAGCCACAGTCGAAGCTGTCAAAACGCCTAACTCAAAGATTGT 389
Query 415 CTATGACGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAACGTGCATTTGC 474
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 390 CTATGATGACCATAACCATGAGCGTTACCCACCTGGTGACCCTAGCAAGCGTGCATTCGC 449
Query 475 CTATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTTATCCGGCTGCTTGTTCT 534
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 450 CTATTTTGTCTTGTCGGGTGGGAGGTTTGTTTATGCCTCTGTCCTCCGCCTGCTTGTTTT 509
Query 535 GAAGCTTGTTGTGAGTATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGT 594
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 GAAGCTTATTGTGAGCATGTCTGCAAGTAAAGATGTCCTTGCCCTTGCATCCCTTGAGGT 569
Query 595 TGACCTAGGGAGCATCGAACCAGGAACTACCGTGACAGTCAAGTGGCGAGGAAAGCCAGT 654
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 570 TGACCTAGGGAGCATAGAACCAGGAACTACCGTGACAGTCAAGTGGCGTGGAAAGCCCGT 629
Query 655 CTTCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CTTCATCAGGCGAAGAACAGAAGATGACATCAAGCTGGCCAATAGTGTGGATGTTGGATC 689
Query 715 CTTGAGGGACCCACAAGAAGACTCGGTTAGAGTCAAGAATCCTGAATGGTTAATCGTGGT 774
| |||||||||||||||||||||||||||| ||||||||||| ||||||||| | || ||
Sbjct 690 CCTGAGGGACCCACAAGAAGACTCGGTTAGGGTCAAGAATCCAGAATGGTTAGTGGTTGT 749
Query 775 TGGAGTATGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGCGGTTG 834
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 750 TGGAGTGTGCACTCATTTGGGGTGCATCCCCTTGCCTAATGCTGGTGATTATGGTGGTTG 809
Query 835 GTTTTGTCCGTGTCACGGTTCGCATTATGATATCTCCGGAAGAATTAGGAAAGGTCCTGC 894
|||||||||||||||||| || ||||| ||||| || |||||||||||||||||||||||
Sbjct 810 GTTTTGTCCGTGTCACGGATCACATTACGATATATCTGGAAGAATTAGGAAAGGTCCTGC 869
Query 895 ACCATACAACCTGGAAGTACCAACCTACAGCTTCTTGGAAGAGAATAAGTTACTCATTGG 954
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 870 ACCATACAACCTGGAAGTACCAACCTACAGCTTCCTGGAAGAGAATAAGTTACTCATCGG 929
Query 955 TTGATGAGTAAA 966
||||| | ||||
Sbjct 930 TTGATTAATAAA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58734637650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5