BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488173 Length=757 Score E Sequences producing significant alignments: (Bits) Value AT5G13510.1 | Symbols: | Ribosomal protein L10 family protein ... 1149 0.0 AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:43... 82.4 6e-15 > AT5G13510.1 | Symbols: | Ribosomal protein L10 family protein | chr5:4341262-4342095 FORWARD LENGTH=834 Length=834 Score = 1149 bits (622), Expect = 0.0 Identities = 717/761 (94%), Gaps = 13/761 (2%) Strand=Plus/Plus Query 1 ACAGTCTCCTCATCTTCTGAGC--GAAAATGGAAGTGGctcttctctccttctcttcttc 58 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 5 ACAGTCTCCTCATCTTCTGAGCAAAAAAATGGAAGTGGCTCTTCTCTCCTTCTCTTCTTC 64 Query 59 cttgtctcctctctGTCACCAGCGAATCTCAACTCTTACACACAAAACCTCAAATTCCCC 118 |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| Sbjct 65 CTTGTCTCCTCTCTGTCACCAGCGAATCTCAACTCTCACACCCAAAACCTCGAATTCCCC 124 Query 119 AAACTACCCTCGCCTCCCGGTCATCAGATCCGCCGTGTCTCGTAACAAGAAGGAAGAGAC 178 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 125 AAATTACCCTCGCCTCCCGGTCATCAGATCCGCGGTGTCTCGTAACAAGAAGGAAGAGAC 184 Query 179 AGTCGAAGCCGTCAAGTCCCACCTGGAGAACTGCCACCTCCTTGCCGCCATCAACTACAA 238 ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| Sbjct 185 TGTCGAAGCCGTCAAGTCTCACTTGGAGAACTGCCATCTCCTCGCCGCCATCAACTACAA 244 Query 239 AGGCCTCACCGTGAAACAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACCACAAAGCT 298 |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 245 AGGCCTCACCGTCAAGCAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACTACAAAGCT 304 Query 299 CATCGTCGCTAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACTAAATGGGAAGCTCT 358 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 305 CATCGTCGCCAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACCAAATGGGAAGCTCT 364 Query 359 CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAAACCGATGAAATCCCTTC 418 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 365 CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAGACCGATGAAATCCCTTC 424 Query 419 CGCCCTCAAGCCCTACCGGAGTTTCCAGAAAGAACGCAAGCTTGAAGACAATGACTTTGC 478 || |||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||| Sbjct 425 TGCTATCAAACCCTACCGGAGCTTCCAGAAGGAACGCAAGCTTGAAAACAATGACTTTGC 484 Query 479 CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCCGACAACTTT-AAAGTTCTCGAGACCA 537 ||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||| Sbjct 485 CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCTGACAA-TTTCAAAGTCCTCGAGACCA 543 Query 538 TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCCATTA 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 544 TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCTATTA 603 Query 598 ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTATA 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 604 ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTACA 663 Query 658 TCAAGAAGTTGGAGGATGAGAGTAATGCATAGTTAATTAAGCT-GTACTAATCATCTTTT 716 | ||||||||||| |||||||||||||||||||||| ||| ||||||||| | ||| Sbjct 664 TTAAGAAGTTGGAAGATGAGAGTAATGCATAGTTAA----GCTTGTACTAATC-T-TTT- 716 Query 717 GGAGAATGTAATGTACGCAACAAAAGGAAATTCCAATTTTT 757 ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 717 GGAGAATGTAATGTACGCAACAAAAGGCAATTC-AATTTTT 756 > AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:4341948-4344671 REVERSE LENGTH=2120 Length=2120 Score = 82.4 bits (44), Expect = 6e-15 Identities = 59/65 (91%), Gaps = 5/65 (8%) Strand=Plus/Minus Query 694 TTAAGC-TGTACTAATCATCTTTTGGAGAATGTAATGTACGCAACAAAAGGAAATTCCAA 752 |||||| |||||| | |||||||||||||||||||||||||||||||||| ||||| || Sbjct 2111 TTAAGCTTGTACT-A--ATCTTTTGGAGAATGTAATGTACGCAACAAAAGGCAATTC-AA 2056 Query 753 TTTTT 757 ||||| Sbjct 2055 TTTTT 2051 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36771395604 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5