BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488173

Length=757
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G13510.1 | Symbols:  | Ribosomal protein L10 family protein ...  1149    0.0  
  AT5G13520.1 | Symbols:  | peptidase M1 family protein | chr5:43...  82.4    6e-15


> AT5G13510.1 | Symbols:  | Ribosomal protein L10 family protein 
| chr5:4341262-4342095 FORWARD LENGTH=834
Length=834

 Score = 1149 bits (622),  Expect = 0.0
 Identities = 717/761 (94%), Gaps = 13/761 (2%)
 Strand=Plus/Plus

Query  1    ACAGTCTCCTCATCTTCTGAGC--GAAAATGGAAGTGGctcttctctccttctcttcttc  58
            ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct  5    ACAGTCTCCTCATCTTCTGAGCAAAAAAATGGAAGTGGCTCTTCTCTCCTTCTCTTCTTC  64

Query  59   cttgtctcctctctGTCACCAGCGAATCTCAACTCTTACACACAAAACCTCAAATTCCCC  118
            |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct  65   CTTGTCTCCTCTCTGTCACCAGCGAATCTCAACTCTCACACCCAAAACCTCGAATTCCCC  124

Query  119  AAACTACCCTCGCCTCCCGGTCATCAGATCCGCCGTGTCTCGTAACAAGAAGGAAGAGAC  178
            ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  125  AAATTACCCTCGCCTCCCGGTCATCAGATCCGCGGTGTCTCGTAACAAGAAGGAAGAGAC  184

Query  179  AGTCGAAGCCGTCAAGTCCCACCTGGAGAACTGCCACCTCCTTGCCGCCATCAACTACAA  238
             ||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||
Sbjct  185  TGTCGAAGCCGTCAAGTCTCACTTGGAGAACTGCCATCTCCTCGCCGCCATCAACTACAA  244

Query  239  AGGCCTCACCGTGAAACAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACCACAAAGCT  298
            |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  245  AGGCCTCACCGTCAAGCAGTTTCAAGACCTCCGGAGAACTCTCCCCGACACTACAAAGCT  304

Query  299  CATCGTCGCTAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACTAAATGGGAAGCTCT  358
            ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  305  CATCGTCGCCAAGAACACTTTGGTCTTCAAAGCCATTGAAGGCACCAAATGGGAAGCTCT  364

Query  359  CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAAACCGATGAAATCCCTTC  418
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  365  CAAGCCTTGTATGAAAGGCATGAACGCTTGGCTTTTCGTCCAGACCGATGAAATCCCTTC  424

Query  419  CGCCCTCAAGCCCTACCGGAGTTTCCAGAAAGAACGCAAGCTTGAAGACAATGACTTTGC  478
             ||  |||| ||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct  425  TGCTATCAAACCCTACCGGAGCTTCCAGAAGGAACGCAAGCTTGAAAACAATGACTTTGC  484

Query  479  CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCCGACAACTTT-AAAGTTCTCGAGACCA  537
            ||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||
Sbjct  485  CGGCGCTGTCTTCGAAGGTAAGTTCTACGCTCCTGACAA-TTTCAAAGTCCTCGAGACCA  543

Query  538  TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCCATTA  597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  544  TGCCCACTCGTGCTGAGGTCTACGCTAAGATGCTCGGTGCTCTGCAATCTCCGGCTATTA  603

Query  598  ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTATA  657
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  604  ATCTCGTCACTACTTTACAAGCACCAGCAAGAGAGGTTATAATGGTGCTTATGGCTTACA  663

Query  658  TCAAGAAGTTGGAGGATGAGAGTAATGCATAGTTAATTAAGCT-GTACTAATCATCTTTT  716
            | ||||||||||| ||||||||||||||||||||||    ||| ||||||||| | ||| 
Sbjct  664  TTAAGAAGTTGGAAGATGAGAGTAATGCATAGTTAA----GCTTGTACTAATC-T-TTT-  716

Query  717  GGAGAATGTAATGTACGCAACAAAAGGAAATTCCAATTTTT  757
            ||||||||||||||||||||||||||| ||||| |||||||
Sbjct  717  GGAGAATGTAATGTACGCAACAAAAGGCAATTC-AATTTTT  756


> AT5G13520.1 | Symbols:  | peptidase M1 family protein | chr5:4341948-4344671 
REVERSE LENGTH=2120
Length=2120

 Score = 82.4 bits (44),  Expect = 6e-15
 Identities = 59/65 (91%), Gaps = 5/65 (8%)
 Strand=Plus/Minus

Query  694   TTAAGC-TGTACTAATCATCTTTTGGAGAATGTAATGTACGCAACAAAAGGAAATTCCAA  752
             |||||| |||||| |  |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  2111  TTAAGCTTGTACT-A--ATCTTTTGGAGAATGTAATGTACGCAACAAAAGGCAATTC-AA  2056

Query  753   TTTTT  757
             |||||
Sbjct  2055  TTTTT  2051



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36771395604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5