BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488185 Length=1876 Score E Sequences producing significant alignments: (Bits) Value AT5G13660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2244 0.0 AT5G13670.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 147 5e-34 > AT5G13660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4404604-4407166 FORWARD LENGTH=2141 Length=2141 Score = 2244 bits (1215), Expect = 0.0 Identities = 1683/1896 (89%), Gaps = 83/1896 (4%) Strand=Plus/Plus Query 46 TGACGGCGCGTTCGAGCTACTGAAGAAGCTAATATTAACTATTAAGAACAGCTCTGCGAT 105 ||||| ||||||||||||||||||| |||||| || |||| ||||||||| | ||||||| Sbjct 259 TGACGCCGCGTTCGAGCTACTGAAGTAGCTAACATCAACTTTTAAGAACATCGCTGCGAT 318 Query 106 CT-ACTCCCAGGGATGCAATTCCAAGAGGATGATAGCAGATTTTAGTAGAAAGGATTTTG 164 || |||||||||||||||| ||||||| ||||| | |||| |||| ||||||||| | Sbjct 319 CTCACTCCCAGGGATGCAAATCCAAGATGATGAGAAAAGATATTAGCAGAAAGGATATAA 378 Query 165 TTGAGAAGATTCCATATTCTGGTTCTTCAACAATGGAATTAAAGCGGAGTTATCATCAGT 224 ||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||| Sbjct 379 TTGAGGAGATTCCATATTCTGGTTCTTCGAGAATGGAATTAAAGCGGAGTCATCATCAGT 438 Query 225 GGTTGACAGAACCGTCTAGCTCACAAGTATTCAAG-AATAAGAG---ACAA---GT-G-G 275 ||||||||||| |||||||||| || ||||| || |||||||| |||| || | | Sbjct 439 GGTTGACAGAAGAGTCTAGCTCAGAACTATTC-AGTAATAAGAGACAACAAGTGGTAGAG 497 Query 276 -TCGATGCTCATATGAATTTATCTTCATTGGACACTTCTCTTGTGCCCACAACACACTTC 334 | ||||||||||||||||||||| ||| |||||||||||||||| || | |||||||| Sbjct 498 ATTGATGCTCATATGAATTTATCTCCATGGGACACTTCTCTTGTG-CC-C-TCACACTTC 554 Query 335 ACTGATTGCTTATTC---GACCCTGCCAATGCGCATTCATCACATCTCCTCCG---TGCT 388 ||||||||||||||| || ||||||| ||||||| |||||||||| ||||| || | Sbjct 555 ACTGATTGCTTATTCGATGATCCTGCCATTGCGCATACATCACATCTTCTCCGTAATGGT 614 Query 389 CGAAATTATAC--A-GAG-GA-GCAAT-C----T-A----TTGGTTTGCCAGTGG-T--T 430 ||||||||||| | ||| | ||||| | | | ||||||||||| ||| | | Sbjct 615 CGAAATTATACTGAGGAGCAATGCAATCCTGTTTCATCTTTTGGTTTGCCACTGGCTCAT 674 Query 431 CATGGGAGCTCTTTTAATCTTGACACCATTAGA-AAAGTTAGCAACTTGCCCGACTTCAT 489 || |||||||||||||||||||||||||||| | |||||||||||| ||||||| ||||| Sbjct 675 CACGGGAGCTCTTTTAATCTTGACACCATTA-ATAAAGTTAGCAACGTGCCCGAGTTCAT 733 Query 490 GGTTCAGCTTTATAATGAGGGATTTTCAACATCATTTGAAAC-GCTTCCTTCTTATAATA 548 ||||||||||||| | ||||| ||||||||||||||||||| || |||||||| ||||| Sbjct 734 GGTTCAGCTTTATGGTCAGGGAATTTCAACATCATTTGAAACGGC-TCCTTCTTTTAATA 792 Query 549 GTGGTCAAGAGAG--C-ACGCTATCCTTTGGCCAAACCTGCACTAGTAGTATTGACAAGA 605 ||||||||||||| | |||||||||||||||||||||| | |||| || ||||| || Sbjct 793 GTGGTCAAGAGAGTACTACGCTATCCTTTGGCCAAACCT--TC-AGTAATACTGACAGGA 849 Query 606 GCTTCATCTTCCCAGGACCA-TTCGCTAGCAAGGCAGATGGAAATTTCATTCAAAACTTT 664 |||||||||| ||||| || ||||||||||| |||||||||||||||||| |||||| Sbjct 850 GCTTCATCTTGCCAGG-GCAGTTCGCTAGCAAAACAGATGGAAATTTCATTCGAAACTTC 908 Query 665 AGTAATGAAGGTATTGGTCTCGTACCAACCGGTGA-TATTTTTGACAAAGGAGATGGAAA 723 | |||||||||| ||||| ||||||| | ||||| || || |||||||||||||| ||| Sbjct 909 AATAATGAAGGTGTTGGTGTCGTACCGATTGGTGATTA-TTATGACAAAGGAGATGAAAA 967 Query 724 TGTCTTGTCAACATTTCATCCATTTCAGAAAGGAGTAGAAAACTTTGTTTTGATGGGTCA 783 |||| |||||||||||||||| || |||||||||||||||||||| | | ||||||||| Sbjct 968 TGTCCTGTCAACATTTCATCCGTTGGAGAAAGGAGTAGAAAACTTTCTATCGATGGGTCA 1027 Query 784 GTCTCTTCAAAAGGCTGATTGCAATATCTTCTCAGTGAGTTCCTCCTATAACAAGGGACA 843 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1028 GTCTCTTCAAAAGGCTGATTGTAATATCTTCTCAGTGAGTTCCTCCTATAATAAGGGACA 1087 Query 844 AGAGAACTTTATGCCTCTTCTATCTTGTG-ACAAATTGCCTGGAA-ACGTTTTCATGACC 901 |||||||||||||||||||| ||||||| || || | ||| ||| ||| |||||||||| Sbjct 1088 GGAGAACTTTATGCCTCTTCTCTCTTGTGAAC-AAGTACCT-GAATACGATTTCATGACC 1145 Query 902 GGATC-AAATAATTACAAAGAAAATGTCAATGCCTTGTCAAG-GGGAGAGT-CTCCATTT 958 | ||| || | || |||| ||||||| |||||| ||||| || |||| ||| || ||||| Sbjct 1146 GAATCTAACT-ATCACAATGAAAATGCCAATGCGTTGTC-AGCGGGACAGTCCT-CATTT 1202 Query 959 ACGGAAGGCGGTGAGATGGCATTTATGGTTTCTAGCC---A-AGAG-A-G---AA-C-A- 1006 |||||||||||||||||| |||||||||||||||||| | |||| | | || | | Sbjct 1203 ACGGAAGGCGGTGAGATGACATTTATGGTTTCTAGCCAAGAGAGAGCAGGTCAAAGCAAT 1262 Query 1007 GATCAAATTAGGCACGA-G--GATAGAAGCCAGACCCTATCTTTTGGAGATTATCAGAAA 1063 |||||||| |||| ||| | ||||||||| ||||||||||||||||||||| ||||||| Sbjct 1263 GATCAAATCAGGCGCGAGGATGATAGAAGCGAGACCCTATCTTTTGGAGATTGTCAGAAA 1322 Query 1064 GAATCCACGATGGGATCAGCAGTCCGTGTTA-TCAACGGTTATGAGAACTTCAGCCATGA 1122 ||| || | ||||||||| |||||||||||| | ||| ||||||||||||||||||||| Sbjct 1323 GAAACCGCAATGGGATCATCAGTCCGTGTTAGT-AACAATTATGAGAACTTCAGCCATGA 1381 Query 1123 CCCTGCAATTGCTAAAGATCCTCCTCATATGGAAGCAGAGGAAAATATGTCTTTTGAATT 1182 |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1382 CCCTGCAATTACTAAAGATCCTCTTCATATCGAAGCAGAGGAAAATATGTCTTTTGAATG 1441 Query 1183 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAAGTAAAGA 1242 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1442 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAATTAAAGA 1501 Query 1243 TACCAAGACAGCTAAGAAGGGTTCTACAAATACATTTCCTTCAAATGTTAAGTCATTGCT 1302 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | Sbjct 1502 TACAAAGACAGCTAAGAAGGGTTCTACAAACACATTTCCTTCAAATGTTAAGTCCTTGTT 1561 Query 1303 GTCAACAGGAATGTTTGATGGGGTTACTGTGAAGTACTATTCGTGGTCACGTGAGGTCAG 1362 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || Sbjct 1562 GTCAACAGGAATCTTTGATGGAGTTACTGTGAAGTACTATTCGTGGTCACGTGAGCAGAG 1621 Query 1363 AAATCTCAAAGGAATCATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGT-AACT 1421 |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1622 AAATCTCAAAGGGATGATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGTAAAC- 1680 Query 1422 TTAATAGAGTTCTTAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCATC 1481 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1681 TTAATAAAGTTCTCAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCACC 1740 Query 1482 CAAATAACCACATATACTTTGAGAATGGAAAGACCATTTATGGCGTTGTTCAAGAGCTGA 1541 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1741 CAAATAACCACATATACTTTGAAAATGGAAAGACCATTTATGGCGTTGTTCAAGAACTGA 1800 Query 1542 AGAATACACCTCAGGAAAAGTTGTTCGATGCTATTCAAAATGTAACAGGATCTTATATCA 1601 |||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | |||| Sbjct 1801 AGAATACACCTCAGGAGAAGTTGTTTGATGCTATTCAAAATGTTACAGGATCTGACATCA 1860 Query 1602 ACCATAAGAATTTCAACACCTGGAAAGCTTCATATCATGTTGCCAGCCTTGAACTTCAGC 1661 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||| Sbjct 1861 ACCATAAGAATTTCAACACATGGAAAGCTTCATATCACGTTGCTAGACTTGAACTTCAGC 1920 Query 1662 GTATCTATGGGAAGGATGATGTCACTTTGGCCTCTTGAGAAGACGAGTTATCAACTGGCA 1721 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1921 GTATCTATGGGAAGGATGATGTCACTTTGGCATCTTGAGAAGACGAGTTATCAACTGGCA 1980 Query 1722 GGCTTTTTGTCGTAAGTGATGTCTGGG-GAAGTCTAGTTCTCTTACTAAAGTATATAAAC 1780 ||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| | Sbjct 1981 GGCTTTTTGTCGTAAGTGAAGTCTGGGTGAAGTCTAGGTCTCTTACTAAAGTATATAATC 2040 Query 1781 TACTGCAAGAACTCCAAATTCTTAGCTTTTATGAGACTTTATGTAGCGCATTGCTTGCTC 1840 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 2041 TACTGCAAGAACTCCAAGTTCTTAGCTTTTATGAGACTTAATGTAGCGCATTGCTTGCTC 2100 Query 1841 TTATTCTGGCAAACCAATACTATCAAAAATGTTTTT 1876 |||||||||||||||||||||||||||||||||||| Sbjct 2101 TTATTCTGGCAAACCAATACTATCAAAAATGTTTTT 2136 > AT5G13670.1 | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:4407077-4409011 REVERSE LENGTH=1318 Length=1318 Score = 147 bits (79), Expect = 5e-34 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1792 CTCCAAATTCTTAGCTTTTATGAGACTTTATGTAGCGCATTGCTTGCTCTTATTCTGGCA 1851 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1318 CTCCAAGTTCTTAGCTTTTATGAGACTTAATGTAGCGCATTGCTTGCTCTTATTCTGGCA 1259 Query 1852 AACCAATACTATCAAAAATGTTTTT 1876 ||||||||||||||||||||||||| Sbjct 1258 AACCAATACTATCAAAAATGTTTTT 1234 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92871008250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5