BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488193
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13720.1 | Symbols: | Uncharacterised protein family (UPF01... 1439 0.0
> AT5G13720.1 | Symbols: | Uncharacterised protein family (UPF0114)
| chr5:4427783-4429133 FORWARD LENGTH=1070
Length=1070
Score = 1439 bits (779), Expect = 0.0
Identities = 919/986 (93%), Gaps = 12/986 (1%)
Strand=Plus/Plus
Query 1 GAAAAAACAACTTCATCCACACACCACATATTTCTCTCCCGCCTAATCCTCCGCGTTCCC 60
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 41 GAAAAACCAACTTCAACCACACACCACATATTTCTCTCCCGCCTAATCCTCCGCGTTCCC 100
Query 61 CAGCCGACGGGCCTATCTTTCTTCTACTACTTGTCCTCCGGCACTTATAACCAAACTC-T 119
|||||||| ||| ||||||||||||||||||||||||||||| | | || | ||| | |
Sbjct 101 AAGCCGACGCGCCGATCTTTCTTCTACTACTTGTCCTCCGGCAATAACAAACTAAC-CAT 159
Query 120 TTAGACTACTAGTTATCTATGGCTCTCTGCTCGTTGATCTCAGCCACTCCGATCTCCGTT 179
|| || | || |||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 160 TTCGAAAAGTAATTATCTATGGCTCTCTCCTCGTTGATCTCAGCCACTCCGCTCTCCCTT 219
Query 180 TCGGTGCCGAGATACCTCGTCTTACCCACGCGCCGCCGTTTTCACATGCCGTTAGCAACT 239
|||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 220 TCGGTGCCGAGATATCTCGTGTTACCCACGCGCCGCCGTTTCCACTTGCCGTTAGCAACT 279
Query 240 CTTGGCTCATCGTCCTCTCCGGAGTCATCGGCATCATCATCGACCCCTACCTCGATTCCC 299
|||| ||||||| | |||| |||||||| ||||||||||||| |||||||||||||||
Sbjct 280 CTTGACTCATCG--C-CTCCAGAGTCATCCGCATCATCATCGATTCCTACCTCGATTCCC 336
Query 300 GTCAACGGGAACACGTTACCTAGTTCTTACCGAACAACTCCCAAAGACAACAGCCCATTT 359
|||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| |||
Sbjct 337 GTCAACGGAAACACGTTACCTAGTTCTTA-CG--GAACTCGCAAAGACGACAGCCCGTTT 393
Query 360 GCTAAGTTCTTTCGTTCCACCGAAGCCAACGTTGAGAGGATAATATTTGATTTCCGGTTC 419
||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 394 GCTCAGTTCTTTCGCTCCACCGAATCCAACGTTGAGAGGATAATATTTGATTTCCGGTTC 453
Query 420 CTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CTAGCGCTTTTGGCAGTAGGAGGTTCGCTGGCTGGTTCGCTACTCTGCTTTCTCAATGGG 513
Query 480 TGTGTCTATATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTGCAAAAGGAATCCAT 539
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 514 TGTGTCTACATAGTGGAGGCATATAAAGTCTACTGGACTAACTGTTCAAAAGGCATCCAT 573
Query 540 ACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTGGCTGGGACTGTT 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 574 ACCGGCCAAATGGTTTTACGCCTAGTCGAAGCTATCGATGTTTATCTAGCTGGGACTGTG 633
Query 600 ATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATGTTAATATTTAGTATGGGTTTGTATGGACTCTTCATCAGTCACTCGCCTCATGATGTT 693
Query 660 CCTCCGGAATCCGATCGTGCCCTTAGATCCTCTTCTCTCTTTGGTATGTTTGCAATGAAG 719
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 694 CCACCGGAATCCGATCGTGCCCTTAGATCCTCTTCCCTCTTTGGTATGTTTGCAATGAAG 753
Query 720 GAGAGGCCGAAATGGATGAAGATTAGCTCACTTGATGAGCTGAAAACCAAAGTGGGACAT 779
||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 754 GAGAGACCAAAATGGATGAAGATCAGCTCACTTGATGAGCTTAAAACCAAAGTGGGACAT 813
Query 780 GTCATTGTTATGATTCTTCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCC 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GTCATTGTTATGATTCTGCTAGTGAAGATGTTCGAGAGAAGCAAGATGGTTACTATCGCC 873
Query 840 ACCGGTCTTGATTTGCTCAGTTATTCCGTTTGCATCTTCTTGTCTTCTGCTTCACTTTAT 899
|||||||| |||||||| |||||||||||||||||||||||||| |||||||| || |||
Sbjct 874 ACCGGTCTAGATTTGCTTAGTTATTCCGTTTGCATCTTCTTGTCCTCTGCTTCTCTGTAT 933
Query 900 ATCCTCCATAATCTCCACAAAGGAGAGACATGAATCCATTCAT-ATGTACAGACCCAAT- 957
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 934 ATCCTCCATAATCTCCACAAAGGAGAGACATGAACCCAT--ATTATGTACAGACCCAATA 991
Query 958 TATCCAATATATATGTTTGCTCTGTT 983
|||||||||||| ||||| |||||||
Sbjct 992 TATCCAATATATGTGTTTACTCTGTT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5