BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488204
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13800.2 | Symbols: PPH, CRN1 | pheophytinase | chr5:4451837... 2604 0.0
> AT5G13800.2 | Symbols: PPH, CRN1 | pheophytinase | chr5:4451837-4454576
REVERSE LENGTH=1755
Length=1755
Score = 2604 bits (1410), Expect = 0.0
Identities = 1626/1725 (94%), Gaps = 35/1725 (2%)
Strand=Plus/Plus
Query 1 CCATTTGATGAAGCTTCTTGCTTTC-GGAATTTGAAAAGGAATTTGTTATGGAGATAATC 59
|||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||||
Sbjct 28 CCATTTGATGAAGCTTCTCGC-TTCTGGAATTTGAAAAGGAACTTGTTATGGAGATAATC 86
Query 60 TCACTGAA-GTTTGTGCCCCAGTGCTCTGTGGTGACTTGGAGTAGTAAATTAGCCACGAA 118
|||||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 87 TCACTGAACG-TTGTGCCCCAGTGCTCTGTGGTTACTTGGAGTAGTAAATTAGCAACGAA 145
Query 119 AAGATTGGTCCCAAATCGATCAAATTTGTTATTATCGGGGGTCAGAAAATCCAGACTTGT 178
|||||||||||||||||| |||| ||||||||| || ||||||| |||||||||||||||
Sbjct 146 AAGATTGGTCCCAAATCGGTCAAGTTTGTTATTCTCAGGGGTCAAAAAATCCAGACTTGT 205
Query 179 GATTCGAAGTGGAAATTCCGATGGTTATGTGGTTGGTGAGAATGATGACTTGGGTAGCAT 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 206 GATTCGAAGTGGAAATTCCGATGGTTATGTTGTTGGTGAGAATGATGACTTGGGTCGTAT 265
Query 239 AGCCAGAAGAGGAGAATCAACATCCAAGGTTTTGATTCCTGGATTGCCTGATGAATCAAA 298
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 266 AGCCAGAAGAGGAGAATCAACGTCAAAGGTTTTGATTCCTGGTTTGCCTGATGAATCAAA 325
Query 299 TGGTGAGGTTGCTGCTCGAATCAGACATTCTCACTGCGAGTGGAAACCCAAGCTTAGAGT 358
|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 326 TGGTGAAATTGCTGCTCGAATCAGTCATTCTCACTGCGAGTGGAAGCCCAAGCTTAGAGT 385
Query 359 ACATTATGAGAAAGCGGGTTGTGATAACCTCGATGCTCCTGCCGTGTTGTTTCTTCCTGG 418
||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||
Sbjct 386 ACATTATGAGAAAGCCGGTTGTGACAATCTCGATGCTCCTGCGGTGTTGTTTCTTCCTGG 445
Query 419 CTTTGGTGTTGGTTCATTTCACTATGAGAAGCAGCTTACCGATTTGGGAAGGGATTATCG 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CTTTGGCGTTGGTTCATTTCACTATGAGAAGCAGCTTACCGATTTGGGAAGGGATTATCG 505
Query 479 AGTATGGGCTATTGATTTTCTTGGGCAGGGTTTATCTCTCCCCACTGAAGATCCTACTAC 538
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 506 AGTATGGGCTATTGATTTTCTTGGACAGGGTTTATCTCTCCCTACTGAAGATCCTACTAC 565
Query 539 CATGACT-------CAAG-T-CTCGGAAGATATGGAACCATTTTGGGGATTTGGTGATAA 589
||||||| | || | ||||||||||| |||||||||||||||||||||||| ||
Sbjct 566 CATGACTGAAGAAACCAGTTCCTCGGAAGATAAGGAACCATTTTGGGGATTTGGTGACAA 625
Query 590 AACTGAACCGTGGGCTGATCAACTTGTATTCTCCCTGGATCTCTGGAGGGATCAAGTTCA 649
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 626 AACTGAACCGTGGGCTGATCAACTTGTATTCTCTCTGGATCTCTGGAGGGATCAAGTTCA 685
Query 650 GTATTTTGTAGAAGAGGTTATCGGTGAGCCTGTGTACATTGCAGGGAACTCACTTGGAGG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GTATTTTGTAGAAGAGGTTATCGGTGAGCCTGTGTACATTGCAGGGAACTCACTTGGAGG 745
Query 710 GTATGTAGCTCTCTACTTTGCAGCAACCCATCCTCACCTGGTAAAGGGTGTTACCTTACT 769
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 746 GTATGTAGCTCTCTACTTTGCAGCAACCCATCCTCACCTGGTTAAGGGTGTTACCTTGCT 805
Query 770 TAATGCAACACCTTTTTGGGGGTTCTTCCCTAATCCAGTAAGATCCCCAAAGCTAGCACG 829
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 806 TAATGCAACACCTTTCTGGGGTTTCTTCCCTAATCCAGTAAGATCCCCAAAGCTAGCACG 865
Query 830 TCTCTTTCCATGGCCCGGAGCATTCCCTCTGCCGGCAAGAGTGaaaaaaaTCACAGAATT 889
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 866 TCTCTTTCCATGGCCCGGAGCATTCCCTCTGCCGGAAAGAGTGAAAAAAATCACAGAATT 925
Query 890 GGTGTGGCAAAAGATAAGTGATCCTGAAAGCATAGCTGAGATACTTAAACAGGTCTACAC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GGTGTGGCAAAAGATAAGTGATCCTGAAAGCATAGCTGAGATACTTAAACAGGTCTACAC 985
Query 950 AGACCATTCTACCAATGTGGATAAAGTATTTTCACGTATTGTGGAGGTCACACAGCATCC 1009
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 986 AGACCATTCTATCAATGTGGATAAAGTATTCTCACGTATTGTGGAGGTCACACAGCATCC 1045
Query 1010 GGCTGCTGCAGCATCGTTTGCTTCAATCATGCTTGCTCCTGGTGGACAGCTATCTTTCTC 1069
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1046 GGCTGCTGCAGCATCGTTTGCTTCAATCATGCTTGCTCCTGGTGGAGAGCTATCTTTCTC 1105
Query 1070 CGAAGCTTTATCTAGGTGTAAGAAAAACAACGTTCAGATATGTCTCATGTATGGAAGAGA 1129
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1106 CGAAGCTTTATCTAGGTGTAAGGAAAACAATGTTCAGATATGTCTCATGTATGGAAGAGA 1165
Query 1130 AGATCCATGGGTGACACCAATATGGGGAAAGAAGATAAAAAAGGAAATCCCCAATGCTCC 1189
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1166 AGATCCATGGGTGAGACCGTTATGGGGAAAGAAGATAAAGAAGGAAATCCCCAACGCTCC 1225
Query 1190 ATACTACGAGATCAGCCCTGCGGGTCACTGCCCACACGATGAAGTCCCTGAGGTGGTGAA 1249
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 ATACTACGAGATCAGCCCAGCGGGTCACTGCCCACACGATGAAGTCCCTGAGGTGGTGAA 1285
Query 1250 CTATCTGATGCGTGGGTGGATCAAGCACCTGGAGTCTGGTGGTTTTGAAGCACTCCCGCT 1309
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1286 CTATCTGATGCGCGGGTGGATCAAGCACCTGGAGTCTGGTGGTTTTGAAGCGCTCCCGCT 1345
Query 1310 TTTGGACAACACTGAAGAAGATTGGGAG---TCCAGCATTGGTAGAGAAATAGAGTTCCC 1366
|||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1346 TTTGGAGGACACTGAAGAAGATTGGGAGGAGTCCAGGATTGGTAGAGAAATTGAGTTCCC 1405
Query 1367 GAGAGATGGTTGGAAAAAAGCAGTGAATCTGTGGTTGTATGGGTCAAACTATTCGTTCTG 1426
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1406 GAGAGATGGTTGGAAAAAAGCAGTGAATCTGTGGTTATATGGGTCAAACTATACGTACTG 1465
Query 1427 GAGAGGAGTTAGAGAATCTTTCAGATCCAGTTTTATAAGGGTGTTTGGAGGGAAGTCTGC 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GAGAGGAGTTAGAGAATCTTTCAGATCCAGTTTTATAAGGGTGTTTGGAGGGAAGTCTGC 1525
Query 1487 ATAGAAGAAGCATGGAACAGTCGTTGTCTAGTGTAAATTAGTTGTAA-CATATGATGCAT 1545
|||||||||||||||||||||||| ||||||||||||| |||||| | |||| |||||
Sbjct 1526 ATAGAAGAAGCATGGAACAGTCGT---CTAGTGTAAATTAATTGTAATC-TATGTTGCAT 1581
Query 1546 CCGATGCTAGCTATATAATGTTGTCTGTAGTAGAATCAAGTTTCTAAAATGTTCAAAAGG 1605
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 1582 CCGATGCTAGCTATATAATGTTGTCTGTAG-A-A-TCAAGTTTCTAAAATGTTCAAAAGG 1638
Query 1606 AAAAAGTTAGAAAAATATCTACTTG-T-------CACCTAAATTGAAGAAACTGCTGCCT 1657
|||| |||||||||||||||||||| | ||||||||| |||| |||| || ||
Sbjct 1639 AAAA-GTTAGAAAAATATCTACTTGATAGTTAGTCACCTAAATCGAAGGAACTCCTTTCT 1697
Query 1658 TGCATTGTTGTATATAATCCACAGATTCATG-TTAATAGAGGAAG 1701
|||||||||||||||||||||||| |||| | |||||| ||||||
Sbjct 1698 TGCATTGTTGTATATAATCCACAGGTTCA-GATTAATATAGGAAG 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5