BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488208 Length=1753 Score E Sequences producing significant alignments: (Bits) Value AT5G13840.1 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468508-44... 2523 0.0 > AT5G13840.1 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468508-4470991 REVERSE LENGTH=1900 Length=1900 Score = 2523 bits (1366), Expect = 0.0 Identities = 1561/1651 (95%), Gaps = 30/1651 (2%) Strand=Plus/Plus Query 46 TAATCAGATCCCGCTCCTATATACTATTATATAATCTCTCCCACCACCGA-AATTTGACC 104 |||||||||||||||||||| | |||||||||||||||||| |||| | | ||||||||| Sbjct 88 TAATCAGATCCCGCTCCTATTTCCTATTATATAATCTCTCCGACCATC-ATAATTTGACC 146 Query 105 GTTGGAGAACATTACT-C-TTT-GCAAAAGAA-GG-------aa-a-a-a-a-aaaGCTC 148 |||||||||||||||| | ||| ||||||||| || || | | | | ||||||| Sbjct 147 GTTGGAGAACATTACTACTTTTCGCAAAAGAAGGGAAAAAAAAAGAGAGAGATAAAGCTC 206 Query 149 TCTTTGATTCTTTTGCAATCTTCTCCT-CTCAATCTCTG-ACCAA--ACC-AACACTTCC 203 |||| ||||||||||||||||||| || || | | || ||| || | || || Sbjct 207 TCTTCGATTCTTTTGCAATCTTCT-CTCCT-ACGGT-TGTTTCAATCTCCGACCA-AACC 262 Query 204 AGTGATTTTGAATAGAACCCAGAAATGGCATCGCCACAGAGTACCAAAACCGGCTTGAAT 263 ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 263 -GTGCTTTCGAATAGAACCCAGAAATGGCATCGCCACAGAGTACCAAAACCGGTTTGAAT 321 Query 264 CTACCCGCACGGATGAACCAGACTTCGTTGCGTCTGGAGACGTTTTCGAGCTCATTTCGT 323 || |||||| ||||||||||||||||||||||| | || ||||||||||||||||||||| Sbjct 322 CTTCCCGCAGGGATGAACCAGACTTCGTTGCGTTTAGAAACGTTTTCGAGCTCATTTCGT 381 Query 324 GGTATTTCGAGTTTATCCTCGCCGTCTAAATCTACTTGCAGCGACAGATTCATACCGTGC 383 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 382 GGGATTTCGAGTTTATCCTCGCCGTCTAAATCGACTTGCAGCGACAGATTCATACCGTGC 441 Query 384 AGATCTTCTTCGAGACTCCACGCTTTCGATCTGCAGGATAAGGAACCGACCACGCCGGTT 443 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 442 AGATCTTCTTCGAGACTCCACGCTTTCGATCTGCAGGATAAGGAACCGACTACCCCGGTT 501 Query 444 AAAGAGGGAGGGAACGAAGCCTACTCCAGACTTTTGAAATCTGAGCTTTTTGGATCTGAT 503 |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||| Sbjct 502 AAAGAGGGAGGGAATGAAGCCTATTCTAGACTTTTGAAATCTGAGCTTTTCGGATCTGAT 561 Query 504 TTCGCTTCTCCT-TGTTTGTCTCCTGCAGGTGGTCAAGGATCTGCTTCTTCTCCGATGAG 562 || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 TTTGCTTCTCCTCT-TTTGTCTCCTGCAGGTGGTCAAGGATCTGCTTCTTCTCCGATGAG 620 Query 563 TCCATGTACTAACATGTTGAGATTCAAGACGGATCGTTCCAATTCAAGTCCTAGTTCGCC 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 621 TCCATGTACTAACATGTTGAGATTCAAGACGGATCGTTCCAATTCAAGTCCTAGTTCGCC 680 Query 623 GTTTTCTCCTTCCATTCTCGGAAATGATAATGGTCTCTCCAGTGACTCGTCTCCGCCTCC 682 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 681 GTTTTCTCCTTCCATTCTCGGAAATGATAATGGTCACTCCAGTGACTCGTCTCCGCCTCC 740 Query 683 GAAACCGCCTCGCAAGGTTCCTAAAACACCTCATAAGGTCTTGGACGCTCCTTCCTTACA 742 ||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 741 GAAGCCCCCTCGCAAGGTTCCTAAAACACCTCATAAGGTCTTGGATGCTCCTTCTTTACA 800 Query 743 AGATGACTTCTACTTGAATGTTGTGGACTGGAGCTCACAGAATGTTCTTGCGGTTGGGCT 802 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 801 AGATGACTTCTACTTGAATGTTGTGGACTGGAGTTCACAGAATGTTCTTGCCGTTGGGCT 860 Query 803 TGGTACTTGTGTCTATCTTTGGACTGCTTCTAATAGCAAAGTGAGTAAGTTATGCGACCT 862 |||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| ||||| Sbjct 861 TGGTACTTGTGTTTATCTTTGGACGGCTTCCAATAGCAAAGTGACTAAGTTATGTGACCT 920 Query 863 AGGGCCTAATGACAGCGTGTGCTCGGTTCAGTGGACACGGGAAGGTTCATATATATCTAT 922 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 AGGGCCTAATGACAGTGTGTGCTCGGTTCAGTGGACACGGGAAGGTTCATATATATCTAT 980 Query 923 TGGTACAAGTCATGGTCAGGTTCAGGTTTGGGACGGAACACAGTGCAAGAGAGTCCGAAC 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 981 TGGTACAAGTCATGGTCAGGTTCAGGTTTGGGACGGAACACAGTGCAAGAGAGTCCGAAC 1040 Query 983 CATGGGAGGTCATCAGACGAGAACTGGTGTCTTGGCATGGAACTCAAGAATCTTATCATC 1042 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1041 CATGGGAGGTCATCAAACAAGAACTGGTGTCTTGGCATGGAACTCAAGGATCTTATCATC 1100 Query 1043 AGGGAGCAGAGACAGAAACATCCTTCAACATGATATCCGAGTCCAGAGCGATTATGTCAG 1102 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1101 AGGGAGCAGAGACAGAAACATCCTTCAGCATGATATCCGAGTCCAGAGCGATTTTGTCAG 1160 Query 1103 CAAACTCGTGGGGCACAAATCTGAAGTCTGCGGTCTGAAATGGTCTCACGATGATAGAGA 1162 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1161 CAAACTCGTGGGCCACAAATCTGAAGTCTGCGGTCTGAAATGGTCTCATGATGATAGAGA 1220 Query 1163 GCTTGCGTCTGGAGGCAATGATAATCAGTTATTGGTATGGAACAATCATTCACAGCAACC 1222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1221 GCTTGCGTCTGGAGGCAATGATAATCAGTTATTGGTATGGAACAATCATTCACAGCAACC 1280 Query 1223 TATTCTGAAGCTGACTGAGCATACAGCAGCGGTTAAGGCAATTACATGGTCTCCTCATCA 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1281 TATTCTGAAGCTGACTGAGCATACAGCAGCGGTTAAGGCAATTACATGGTCTCCTCATCA 1340 Query 1283 GAGCAGCCTCCTTGCTTCAGGAGGTGGAACCGCAGACAGATGCATTAGATTCTGGAACAC 1342 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1341 GAGCAGCCTCCTTGCTTCGGGAGGTGGAACCGCAGACAGATGCATTAGATTCTGGAACAC 1400 Query 1343 GACAAACGGACATCAGTTAAACAGCATCGACACTGGGAGCCAGGTCTGCAATCTGGCATG 1402 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1401 GACAAACGGAAATCAGTTAAACAGCATCGACACTGGGAGCCAGGTCTGCAATCTGGCGTG 1460 Query 1403 GAGCAAGAATGTTAACGAGATAGTGAGTACTCATGGCTACTCTCAAAACCAAATCATGCT 1462 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1461 GAGCAAGAATGTTAACGAGATAGTGAGTACTCATGGATACTCTCAAAACCAAATCATGCT 1520 Query 1463 CTGGAAGTACCCATCCATGTCAAAGGTTGCAACACTTACTGGCCACAGTATGAGAGTACT 1522 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1521 CTGGAAGTACCCATCCATGTCAAAGGTTGCAACACTTACGGGCCACAGTATGAGAGTACT 1580 Query 1523 TTACTTGGCTACGTCACCTGATGGCCAGACTATAGTGACCGGAGCAGGAGATGAGACCCT 1582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1581 TTACTTGGCTACGTCACCTGATGGCCAGACTATAGTGACCGGAGCAGGAGATGAGACCCT 1640 Query 1583 GCGGTTTTGGAACGTCTTCCCTTCAGTGAAAATGCAGACACCAGTGAAGGACACAGGTCT 1642 |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 1641 GCGGTTTTGGAACGTCTTTCCTTCAGTAAAAATGCAGACACCAGTGAAAGACACAGGTCT 1700 Query 1643 ATGGTCATTGGGGAGGACACAGATCCGATAA 1673 |||||||||||||||||||||||||||||| Sbjct 1701 CTGGTCATTGGGGAGGACACAGATCCGATAA 1731 Score = 73.1 bits (39), Expect = 8e-12 Identities = 51/56 (91%), Gaps = 3/56 (5%) Strand=Plus/Plus Query 1 GCTAGGACCAAAGATCTGACCGTTGGAGCATGAACTCCACAAATC--TAATCAGAT 54 ||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||| Sbjct 10 GCTAGGACCCAAGATCTGACCGTTGGAGCATGAACTCCAGAAATCGATAAT-AGAT 64 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86696341215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5