BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488219 Length=1490 Score E Sequences producing significant alignments: (Bits) Value AT5G13930.1 | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene ... 2324 0.0 > AT5G13930.1 | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488688-4490264 FORWARD LENGTH=1491 Length=1491 Score = 2324 bits (1258), Expect = 0.0 Identities = 1423/1500 (95%), Gaps = 21/1500 (1%) Strand=Plus/Plus Query 1 AAATACACCTAACTTGTTTAGTACAC-A-A-CAACATCAAACTCTAATAAACCCAAGTTG 57 |||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| Sbjct 3 AAATACACCTAACTTGTTTAGTACACAACAGCAACATCAAACTCTAATAAACCCAAGTTG 62 Query 58 GTGTGTAATATAATGGTGATGGCTGCAGGAGCGTCTTCGTTGGATGAGATCAGAAAGGCT 117 |||| || |||||||||||||||| || || ||||| ||||||||||||||| ||||| Sbjct 63 GTGTATACTATAATGGTGATGGCT---GGTGCTTCTTCTTTGGATGAGATCAGACAGGCT 119 Query 118 CAGAGAGCTGATGGACCTGCAGGGATCTTGGCTATTGGCACGGCTAACCCTGAGAACCAT 177 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 120 CAGAGAGCTGATGGACCTGCAGGCATCTTGGCTATTGGCACTGCTAACCCTGAGAACCAT 179 Query 178 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGAATCACCAACAGTGAACACATGACC 237 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 180 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACC 239 Query 238 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGATGATTCGGAAACGCCACATG 297 |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 240 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGACAATTCGGAAACGTCACATG 299 Query 298 CATCTGACAGAGGACTTCCTCAAGGAAAACCCACACATGTGCGCTTACATGGCTCCTTCT 357 |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 300 CATCTGACGGAGGAATTCCTCAAGGAAAACCCACACATGTGTGCTTACATGGCTCCTTCT 359 Query 358 CTAGACACCCGACAGGACATCGTTGTGGTTGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 417 || |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 360 CTGGACACCAGACAGGACATCGTGGTGGTCGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 419 Query 418 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 479 Query 478 ACTACCTCTGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 537 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACTACCTCCGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 539 Query 538 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAACAAGGTTGCTTCGCCGGCGGCACTGTC 597 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 540 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAGCAAGGTTGCTTCGCCGGCGGTACTGTC 599 Query 598 CTCCGTATCGCTAAGGACCTTGCCGAGAACAACCGCGGAGCTCGTGTCCTTGTCGTCTGC 657 ||||||||||||||||| || ||||||||||| || ||||| |||||||| || |||||| Sbjct 600 CTCCGTATCGCTAAGGATCTCGCCGAGAACAATCGTGGAGCACGTGTCCTCGTTGTCTGC 659 Query 658 TCTGAGATCACAGCTGTCACCTTCCGTGGCCCCTCTGACACCCACCTCGACTCCCTCGTC 717 |||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||| Sbjct 660 TCTGAGATCACAGCCGTTACCTTCCGTGGTCCCTCTGACACCCACCTTGACTCCCTCGTC 719 Query 718 GGTCAGGCTCTTTTCAGTGACGGCGCTGCCGCACTCATCGTGGGCTCGGACCCTGACACA 777 |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| Sbjct 720 GGTCAGGCTCTTTTCAGTGATGGCGCCGCCGCACTCATTGTGGGGTCGGACCCTGACACA 779 Query 778 TCTGTCGGAGAGAAACCCATCTTCGAGATGGTGTCCGCCGCCCAGACCATCCTGCCAGAC 837 ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 780 TCTGTCGGAGAGAAACCCATCTTTGAGATGGTGTCTGCCGCTCAGACCATCCTTCCAGAC 839 Query 838 TCTGATGGTGCCATAGACGGACACTTGAGGGAAGTGGGTCTCACCTTCCATCTCCTCAAG 897 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 840 TCTGATGGTGCCATAGACGGACATTTGAGGGAAGTTGGTCTCACCTTCCATCTCCTCAAG 899 Query 898 GATGTCCCCGGCCTCATCTCGAAGAACATTGTTAAGAGTCTAGACGAAGCGTTTAAACCT 957 ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 900 GATGTTCCCGGCCTCATCTCCAAGAACATTGTGAAGAGTCTAGACGAAGCGTTTAAACCT 959 Query 958 TTGGGGATTAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1017 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 TTGGGGATAAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1019 Query 1018 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1079 Query 1078 GTGTTGAGCGAGTATGGAAACATGTCTAGCGCGTGCGTTCTCTTTATACTAGACGAGATG 1137 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1080 GTGTTGAGCGAGTATGGAAACATGTCGAGCGCGTGCGTTCTCTTCATACTAGACGAGATG 1139 Query 1138 AGGAGGAAGTCAGCCAAGGATGGTGTGGCCACTACAGGAGAAGGGTTGGAGTGGGGTGTC 1197 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1140 AGGAGGAAGTCAGCTAAGGATGGTGTGGCCACGACAGGAGAAGGGTTGGAGTGGGGTGTC 1199 Query 1198 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1259 Query 1258 TAATA-AGAACGCTTTCCTTCTATCTGCCTACCTACACTACGCAAAACTTTAATCCTGTC 1316 ||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1260 TAA-ACAGAACGCTTGCCTTCTATCTGCCTACCTAC-CTACGCAAAACTTTAATCCTGTC 1317 Query 1317 TTATGTTTTATATAATATAATC-T-AT--GTTTATGCAATAATTAAGGAAGAATTCATTT 1372 |||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| Sbjct 1318 TTATGTTTTATATAATATAATCATTATATGTTTACGCAATAATTAAGGAAGAATTCATTT 1377 Query 1373 GATGTGATATGTGATTTGAAATGTGCTGGACAGGTCTATTCGACTATTTTTGTAC-CT-T 1430 ||||||||||||||| | |||||||||||||||||||||||| ||||||||| || | Sbjct 1378 GATGTGATATGTGAT---A--TGTGCTGGACAGGTCTATTCGACTGTTTTTGTACTCTCT 1432 Query 1431 TTGTTTGTGTCTTTTTACAATATTAAATCTACGGGTCTTGAATGACATGAAATCTTTGTT 1490 || |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 1433 TT-TTTGTGTCTTTTTACAATATTAAATCTATGGGTCTTGAATGACATCAAATCTTTGTT 1491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73493597880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5