BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488220
Length=3177
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13950.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3483 0.0
> AT5G13950.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1).
| chr5:4496151-4500725 REVERSE LENGTH=3114
Length=3114
Score = 3483 bits (1886), Expect = 0.0
Identities = 2112/2222 (95%), Gaps = 12/2222 (1%)
Strand=Plus/Plus
Query 775 GAGATCAAGAGGGGGCAATGCACAAGTAAATGGTAGCTGCCAGGATCTAACAGCTGCCTC 834
||||||||||||||||||||||||||| || ||||||||||||| ||| || ||||||||
Sbjct 903 GAGATCAAGAGGGGGCAATGCACAAGTGAACGGTAGCTGCCAGGGTCTGACTGCTGCCTC 962
Query 835 GGGGTCGAGTTCCTGGAATGCAGATGATAAACCAGACAGTAGTGATAATAAGATTTCTTC 894
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 963 GGGGTCGAGTTCCTGGAATGAAGATGATAAACCAGACAGTAGTGATAATATGATTTCTCC 1022
Query 895 TGTTGTAAGGAGTGGAGAGGTTCAGAGAAGGCCCAAGAACTCTGGTTTAGAGAAAGAAAA 954
|||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1023 TGTTGTGAGGTGTGGAGAGGTTCAGAGAAGGTCCAAGCGCTCTGGTTTAGAGAAAGAAAA 1082
Query 955 ATCTCAAACTAATGGTGTCAACGTGGGCGGAAAAGTTAGAAAGAAGGATGTGTTGCCGAA 1014
| |||||| ||||||||| |||||||| |||||||||||||||||| | |||||||||||
Sbjct 1083 AACTCAAAATAATGGTGTAAACGTGGGTGGAAAAGTTAGAAAGAAGAACGTGTTGCCGAA 1142
Query 1015 AGATAGCATTCAGCAAACTGATGGTGCTAAATACATGTCCTATCTTAAGATAAGCAAGAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AGATAGCATTCAGCAAACTGATGGTGCTAAATACATGTCCTATCTTAAGATAAGCAAGAA 1202
Query 1075 GCAGCATCAAATTGTCACAAGCATGAAGCAGTCTGGTAAAAGCATTCAGTCGAGAGCACT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GCAGCATCAAATTGTCACAAGCATGAAGCAGTCTGGTAAAAGCATTCAGTCGAGAGCACT 1262
Query 1135 TAATCGAATCTTGGGTAACATCGATAGTTTAGATGTTCAGCCATACGGAGTGTTCGTGGA 1194
|||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1263 TAATCGAATCTTCGGTAACATCGATAGTTTAGATGTTCAACCATACGGAGTTTTTGTGGA 1322
Query 1195 AGAAGAACAGAAGAAACTGAACGCTCACTGGCTGCATCTTGTTAAAGATCTTCCTGCAGC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 AGAAGAACAGAAGAAACTGAACGCTCACTGGCTGCATCTTGTTAAAGATCTTCCTGCAGC 1382
Query 1255 ATATGCAATATGGAAAAAGCTACAGTTACAGAAACGAGATATAATCAGCTCTATGGGAAG 1314
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 ATATGCAATATGGAAAAGGCTACAGTTACAGAAACGAGATATAATCAGCTCTATGGGAAG 1442
Query 1315 AGAACTGAAGGACAAACGCAATCCGTGGATGGAGGATAAACAACAACAGTATGCTGCAGA 1374
||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1443 GGAACTGAAGGAAAAATGCAATCTGTGGATGGAGGATAAACAACAACAGTATGCTGCAGA 1502
Query 1375 AAACCCCCTGCAGAAGCATGATGTTCAATACAATAATCGAGAAAGTTTGAATCCTAATCA 1434
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1503 AAACCCTCTGCAGAAGCATGATGTTCAATACAATAATGGAGAAAGTTTGAATCCTAATCA 1562
Query 1435 GAGTGGTGATATGGCACAAGATGATGAAGATTCTGGAATTTTCAGTCAAATTTCTGGCAA 1494
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1563 GAGTGGTGATATGGCACCAGATGGTGAAGATTCTGGAATTTTCAGTCAAATTTCTGGCAA 1622
Query 1495 GAATCACTCCCCTGCAAAGGATTCTTCGTCTTATGGTGACCAAATCACAGATTCAGGTCG 1554
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 GAATCACTCCCCTTCAAAGGATTCTTCGTCTTATGGTGACCAAATCACAGATTCAGGTCG 1682
Query 1555 CTGCTTGCTAGTTGGCACACACTCCTCACAGGTTTCATCACCAGATTGTGGCAATAACAT 1614
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1683 CTGCTTGCTAGTTGGTACACACTCCTCACAGGTTTCATCACCAGATTGTGGAAATAACAT 1742
Query 1615 CAATCTGGAGGATAGAGAAGAGAAACAATATTCGTCTCCTTGTTCTCCCAGCAGGTGTCA 1674
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1743 CAATCACGAGGATAGAGAAGAGAAACAATATTCTTCTCCTTGTTCTCCCAGCAGGTGTCA 1802
Query 1675 TGGCCTTAACCGAACAGATGTTGAGGTAAATGATTATTCCAGCTCTATTCAAGGTCAGTC 1734
|| ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||
Sbjct 1803 CAGCTTTAACCGAACAGATGTTGAAGTAAATAATTATTCCAGCTCTATACAAGGTCAGTC 1862
Query 1735 TCTCCCACAGGCTTCATTTCCTAATGAGCCCCGCGCTTCAAATCTCGAAGATGCAGATCA 1794
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1863 TCTCCCACAGGCTTCATTTCCTAATGAGCCCCATGCTTCAGATCTCGAAGATGCAGATCA 1922
Query 1795 TGTAGGCAAGCACTGTGCACCAGAACTAGAAAATGCTTCGTTAGACGAGAGGATTCCTTT 1854
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1923 TGTAGGCAAGCACTGTGCACCAGAACTAGAGAATGCTTCGTTAGACGAGAGGATTCCGTG 1982
Query 1855 TATTGCTGCAAGCCATGGAGAAGGGTCGCAGTTTTGTTCTGGTGGAGATGTGTGGCAGCC 1914
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1983 TATTGCTACAAGCCTTGGAGAAGGGTCGCAGTTTTGTTCTGGTGGAGATGTGTGGCAGCC 2042
Query 1915 AGTGGGAGGGATTAGGCAGTCCTACATTAGCCGTCAAGCTTACACCCCCAGTGGTGGATT 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 AGTGGGAGGGATTAGGCAGTCCTACATTAGCCGTCAAGCTTACACCCCCAGTGGTGGATT 2102
Query 1975 GTCAATCATACACCATCCTGAAGGTGATGAAGTAGGTAAAAACTGTTTCATAGACCTGGA 2034
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2103 GTCAATCATACACCATCCTGAAGGTGATGAAGTAGCTAAAAACTGTTTCATAGACCTGGA 2162
Query 2035 ATCGAACATGCCTGGAGAAGTTGATAGGAGGAAGATGTCACAGCGAAAAGCAAACAACAG 2094
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2163 ATCGAACATGCCTGAAGAAGTTGATAGGAGGAAGATGTTGCAGCGAAATGCAAACAACAG 2222
Query 2095 TTTTGGTTCTATCCCTAACAACGATCAAAATGAACTACTACAGTCTTTGTTTAATGGCCA 2154
|||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 2223 TTTTGGTTCTTTCCCTAACAACAACCAAAATGAAATACTACAGTCTTTGTTTAATGGCCA 2282
Query 2155 TGGCGTGGCATCTCGCACCACTGAGCAGCTTCATTCTCTTCTCAAAGTCCCGCTTAACGA 2214
|| ||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2283 GGGTATGGTATCTCGCACCACTGAGCAGCTTCATCCTCTTCTCAAAGTCCCACTTAACGA 2342
Query 2215 GGAGCATAAACAAATTATGGGCATTGGTTTTCAGCAGGAAGGAAGCAACAATCTGATGGT 2274
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 2343 GGAGCATAAACAAATTATGGGCATTGGTTTTCAGCAGGAAGGAAACAACAATATGATGGT 2402
Query 2275 GGGCAATCAATTTTCTGGTCAGTTCCAGGATCAGATTCCTGTATCTCATGCACTGCCCCA 2334
||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 2403 GGGCAATCAATTTTCTGGTCAGTTCCAGGATCAGATTCCTGCATCTCATGCATTTCCCCA 2462
Query 2335 GGACCAGCAGAGACAGGTTGACGCTTTTGGCCAAGGAAGTATGTCAGACAACATTTACTG 2394
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 2463 GGACCAGCAGAGACAGGTTGACGCCTTTGGCCAAGGAAGCATGTCAGACAACATTTAC-- 2520
Query 2395 CAATGGACGTGGATTCTTGATGCAGCGGCCAGACTGGAACCCCAATTGTACTCAGGTAGG 2454
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2521 C---G----TGGATTCTTGATGCAGCGGCCAGACTGGAACCCCAATTGTACTCAGATAGG 2573
Query 2455 AGTTACCACACAGCCCCTGTTGAGCACCGGGCCTTTGTTAAATCAGAATTGGCAATTTAG 2514
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 AGTTACCGCACAGCCCCTGTTGAGCACCGGGCCTTTGTTAAATCAGAATTGGCAATTTAG 2633
Query 2515 GAGCATGTGGGCAAACACAAACGGTGTCGGATGTACAAACCAAGGCAGTCAAACCGGGAC 2574
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2634 GAGCATGTGGGCAAACACAAACGGTGTCGGATGTACAAGCCAAGGCAGTCAAACCGGGAC 2693
Query 2575 TGAGAGAGATCTGAGCCTTCTCAGAGTTGCTAATAACGCGGAGCAGATAATTCATAGGGG 2634
|||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2694 CGAGAGAGATCCGAGCCTTCTCAGAGTTGCTAATAACGCAGAGCAAATAATTCATAGGGG 2753
Query 2635 AAGTAGTTCAGATCAAAGCTTATTCTCTGTTCTCTCTCAATGCAGTCAATTGCGCCGTTC 2694
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2754 AAGTAGTTCAGATCAAAGCTTATTCTCTGTTCTCTCTCAATGCAGTCAACTGCGCCCATC 2813
Query 2695 CAGATCTGATTTCGAGCCAGAAAGTTCGAGTCATCAAATGGTTGCATCTGGTAACTACGG 2754
|||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2814 CAGATCTGCTTTCGAGCCAGAAAGTTCAAGTCATCAAATGGTTGCGTCTGGTAACTACGG 2873
Query 2755 AATGATGATGGGGGGAGGAGGTACAACTCAGGTAAGCAGCAATTTGGTTCAGCCTGCGAA 2814
|||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 2874 AATGCTGATGGGGGGAGGT--T-CAACTCAAGTAAGCAGCAATTTGGTTCAGCCTGCGAA 2930
Query 2815 CCCGCTTGATTACTTGAGCGGTAGCAACCCTACAACATCCTTGATGCCAGACGATGTAGC 2874
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2931 CCCGCTTGATTACTTGAGCGGTAGCAACCCTACAACATCTTTGATGCCAGATGATGTAGT 2990
Query 2875 GTGGATGAACCAGAGCCATCAGAACTCTGGTCTCCATGACCCACTAGGCAAGCTGTATCC 2934
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 2991 GTGGATGAACCAGAGCCGCCAGAACTCTGGTCTCCATGACCCACTAGGCAAGTTGTATCC 3050
Query 2935 AAGGTCATGGAATCCGTAACCATGTTTCTGAAGTTTTGTGTTGCAAAAGCATCTGGTCAT 2994
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 3051 AAGGTCATGGAATCCGTAACCATGTTTCTAAAGTTTTGTGTTGCAGAAGCATCTGGTCAT 3110
Query 2995 CT 2996
||
Sbjct 3111 CT 3112
Score = 1199 bits (649), Expect = 0.0
Identities = 735/777 (95%), Gaps = 4/777 (1%)
Strand=Plus/Plus
Query 1 TCTTCTCTTCTCTTCTCTGCGGTCGTTTTTTGTGT-CAGATAG-AACAAAAGATTGGATA 58
||||||||||||||||||||||||| | |||| | ||||||| ||||||||||||||||
Sbjct 84 TCTTCTCTTCTCTTCTCTGCGGTCG--TCTTGTCTCCAGATAGAAACAAAAGATTGGATA 141
Query 59 CTTCAGACACAATCGATCACCGAATTAACTATTCGCCGCTCTCTTCTCAATCAGCCGTAA 118
|||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 142 TTTCAGACACAATCGATCAAAGAATAAACTATTCGTCGCTCTCTTCTCAATCAGCCGTAA 201
Query 119 AAAATGGCAGCTGATCAGAGGAGAAAGCGGATGAACAGTGCAAATGTTATTGGTTTCAGT 178
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 202 AAAATGGCAGCTGATCAGAGGAGAAAGCGGATGAACAGTGCCAATGTTATTGGTACCAGT 261
Query 179 TCTCGGGAGCATTACAGAGCAAAAAGGAAAAAGATTGGTTCACCAGATGGTGCTTTGCGT 238
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 262 TCTCGGGAGCATTACAGAGCAAAAAGGAAAAAGAATGCTTCACCAGATGGTGCTTTGCGT 321
Query 239 TCCGGTGATCACATCAGTCTTGAATGGGACCGCAACCGAAGTAAAGTAGTCTCTAAGAGG 298
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
Sbjct 322 TCCGGTGATCACATCACTCTTGAATGGGATCGCAACCGAAGTAAAGTAGTCTCTAAGAAG 381
Query 299 GAGCAAGTTGGCCTTAGTTGGAGACATCTTCGTGAATTTGTTGATGTTGTTCCTCCTAGG 358
|| |||||||| || |||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 382 GAACAAGTTGGTCTAAGTTTTAGGCATCTTCGTGAATTTGTTGATGTCGTTCCTCCTAGG 441
Query 359 CGGAATGTCTTGGCACAAGTCTGCCCTGTCCCGCATGAAACTTTCCAGTTGGAAAATCTG 418
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 442 CGTAATGTCTTGGCACAAGTATGCCCTGTCCCGCATGAAACTTTCCAGTTGGAAAATCTG 501
Query 419 TCAGAGGTGCTTTCTAATGAGGTTTGGCGTTCTTGTCTATCTGATGGTGAAAGGAATTAT 478
|| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 502 TCGGAGGTGCTTTCTAATGAGGTTTGGCGATCTTGTCTGTCTGATGGTGAAAGAAATTAT 561
Query 479 CTGCGGCAATTTCTCCCTGAGGGAGTTGATGTGGAGCAAGTTGTACAAGCATTGCTTGAT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CTGCGGCAATTTCTCCCTGAGGGAGTTGATGTGGAGCAAGTTGTACAAGCATTGCTTGAT 621
Query 539 GGGGAGAATTTTCATTTTGGAAATCCTTCTCTTGATTGGGGAACAGCTGTCTGCTCCAGC 598
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 622 GGCGAGAATTTTCATTTTGGAAATCCTTCTCTTGATTGGGGAACAGCTGTCTGCTCCGGT 681
Query 599 AAAGCTCATCCAGATCAAATCGTTTCTTGGGAGGAACGCCTGAGGGCTGATAAAAGGAGA 658
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 682 AAAGCTCATCCAGATCAAATCGTTTCACGGGAGGAATGCCTGAGGGCTGATAAAAGGAGA 741
Query 659 TACTACTCGGATTTAGAGAAATACCATCATGATATTATAGATTATTTGCAGACATTGAAG 718
|| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 742 TATTACTCGAATTTAGAGAAATATCATCAAGATATTATAGATTATTTGCAGACATTGAAG 801
Query 719 GAGAAATGGGAAAGCTGCAAAGATCCAGAGAAGGATATTGTCAAAATGATGTGGGGG 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GAGAAATGGGAAAGCTGCAAAGATCCAGAGAAGGATATTGTCAAAATGATGTGGGGG 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158025870450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5