BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488239
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14070.1 | Symbols: ROXY2 | Thioredoxin superfamily protein ... 773 0.0
AT3G02000.1 | Symbols: ROXY1 | Thioredoxin superfamily protein ... 302 3e-81
> AT5G14070.1 | Symbols: ROXY2 | Thioredoxin superfamily protein
| chr5:4541836-4542514 FORWARD LENGTH=679
Length=679
Score = 773 bits (418), Expect = 0.0
Identities = 477/505 (94%), Gaps = 6/505 (1%)
Strand=Plus/Plus
Query 1 CAACCAACTCACACCCACAttctctcgctctct--gtagcttcttctctttctc--ttcc 56
|||||||||| ||| || ||||||||||||||| | ||| ||||||||||| || |
Sbjct 1 CAACCAACTCTCACACAAATTCTCTCGCTCTCTCACTCTCTTATTCTCTTTCTCTTTTTC 60
Query 57 tctAAAAATACaaaaaaaaaaaTGCAATACAAAACAGAAACTCGAGGGTCGTTGTCCTAC 116
||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAAGAATAC--AAAAAAAGATGCAATACAAAACAGAAACTCGAGGGTCGTTGTCCTAC 118
Query 117 AACAACAATAGCAAGGTGATGAACAACATGAATGTGTTTCCGTCGGAGACACTGGCGAAG 176
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AACAACAACAGTAAGGTGATGAACAACATGAATGTGTTTCCGTCGGAGACACTGGCGAAG 178
Query 177 ATAGAGTCGATGGCTGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACGTGCTGCATG 236
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 179 ATAGAGTCGATGGCGGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACTTGCTGCATG 238
Query 237 TGCCACGCCATCAAGCGTCTCTTCCGTGGAATGGGGGTCAGCCCCGCCGTCCACGAGCTC 296
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 TGCCATGCCATCAAGCGTCTCTTCCGTGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 298
Query 297 GACCTCCTCCCTTACGGCGTTGAAATCCACCGAGCTCTCATTCGTCTCCTGGGCTGTTCC 356
||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||
Sbjct 299 GACCTCCTCCCTTACGGAGTTGAAATCCACCGAGCTCTCCTCCGTCTCCTTGGCTGTTCC 358
Query 357 AGCGGTGGCGCTACTTCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGATGGTA 416
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGCGGTGGCGCCACATCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGATGGTA 418
Query 417 GGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAAA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAAA 478
Query 477 GATGCTGGCGCTCTTTGGCTCTGAT 501
|||||||||||||||||||||||||
Sbjct 479 GATGCTGGCGCTCTTTGGCTCTGAT 503
> AT3G02000.1 | Symbols: ROXY1 | Thioredoxin superfamily protein
| chr3:332275-333022 REVERSE LENGTH=748
Length=748
Score = 302 bits (163), Expect = 3e-81
Identities = 273/326 (84%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 177 ATAGAGTCGATGGCTGCAGAGAATGCGGTGGTTATATTCAGCGTGAGCACGTGCTGCATG 236
|||||||| ||||| | |||| |||||||| || ||||||||||||||||||||||||
Sbjct 194 ATAGAGTCCCTGGCTTCTGAGAGCGCGGTGGTGATCTTCAGCGTGAGCACGTGCTGCATG 253
Query 237 TGCCACGCCATCAAGCGTCTCTTCCGTGGAATGGGGGTCAGCCCCGCCGTCCACGAGCTC 296
||||||||| | ||| |||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 254 TGCCACGCCGTGAAGGGTCTCTTCAGAGGAATGGGCGTCAGCCCCGCCGTCCACGAGCTC 313
Query 297 GACCTCCTCCCTTACGGCGTTGAAATCCACCGAGCTCTCATTCGTCTCCTGGGCTGTTCC 356
||||||| ||| ||||||| || ||||| ||||| |||||||||||||| ||||| |||
Sbjct 314 GACCTCCACCCCTACGGCGGCGACATCCAGCGAGCCCTCATTCGTCTCCTCGGCTGCTCC 373
Query 357 AGCGGTGGCGCTACTTCTCCGGGGGCACTTCCGGTGGTGTTCATCGGAGGGAAGA-TGGT 415
|| | | || ||||||| ||| | || ||||| || |||||||| || || | ||||
Sbjct 374 GGC--T--C-CT-CTTCTCCAGGGTCTCTCCCGGTCGTCTTCATCGGCGGTAA-ACTGGT 426
Query 416 AGGAGCAATGGAGAGAGTGATGGCTTCACATATCAATGGCTCACTCGTCCCTCTTCTCAA 475
||||| ||||| ||||| |||||||| || || || ||||| ||||| |||||||||||
Sbjct 427 TGGAGCTATGGACAGAGTCATGGCTTCTCACATAAACGGCTCTCTCGTTCCTCTTCTCAA 486
Query 476 AGATGCTGGCGCTCTTTGGCTCTGAT 501
||| || |||||||| ||||||||||
Sbjct 487 AGACGCCGGCGCTCTCTGGCTCTGAT 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5