BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488271
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46610.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2734 0.0
AT5G14350.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 438 9e-122
AT5G14320.1 | Symbols: | Ribosomal protein S13/S18 family | ch... 169 1e-40
> AT3G46610.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:17160005-17162475 REVERSE LENGTH=2471
Length=2471
Score = 2734 bits (1480), Expect = 0.0
Identities = 1800/1950 (92%), Gaps = 40/1950 (2%)
Strand=Plus/Plus
Query 210 GAAAGTTCTGTTTCTGTGTGAGCCAAAGAGAAATTTGTCGGGATCATCGGTCGGGGTGGG 269
||||||||||||| |||||||||||||||||| ||||| |||||||||| | ||||| ||
Sbjct 443 GAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGG 502
Query 270 ATGGGCCACGGAGCAAC--G-G---GAGCTC-GGG--GAAGAAGTTTCCACGGAAGATTC 320
||||||||| ||||||| | | |||||| ||| ||||||||||||||||||||||
Sbjct 503 ATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTT 562
Query 321 AAGTTATCCACAAACTGTAAATGGAGGAGAAAA-AACCAATTCAAGAGTTGATGTTAGAG 379
||| | | | | | ||||||||||||||| || ||||| |||||||||||||||||
Sbjct 563 AAG-T-T---C--A--GCAAATGGAGGAGAAAAGAA-CAATTTAAGAGTTGATGTTAGAG 612
Query 380 AATTGGCGTATAGTTTACGAGCTGCTAAGACAGCAGATGATGTGGATGTTGTTCTCAAGG 439
|||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 613 AATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGG 672
Query 440 AGAAGGGAGAATTACCTCTACAAGTCTATTGTGCTATGATTAGGGGTTTTGGCAAGGACA 499
| |||||||| || ||||| ||||||| |||||||||||| | |||||||||||||||||
Sbjct 673 ACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACA 732
Query 500 AGAGACTGAAGCCTGCGATAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAG 559
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAG 792
Query 560 GCGGTGTCATAGGTCCAAACCTTTTTATATATAACAGCCTTTTGGGTGCGATGAAACAGT 619
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct 793 GCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATG--AGAG- 849
Query 620 CGAGTGTTGGGGAAGCAGAGAAGATACTGAGTGATATGGAGGAAGAAGGGATTGTTCCAA 679
| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 850 -G-GT-TTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAA 906
Query 680 ACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGGGAGTTTCACAAGG 739
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 907 ACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGG 966
Query 740 CCCTTGGGATTCTTGATTTAGTCAAGGAAAAAGGTTTTGAGCCTAACCCGATAACATATT 799
| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 967 CTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATT 1026
Query 800 CAACGGCTTTGCTTGTCTACAGAAGAATGGAAGACGGTATGGGAGCTCTCGAGTTCTTTG 859
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1027 CAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTG 1086
Query 860 TTGAATTGAGAGAGAAATACTCAAAGAGGGAAATAGGGAATGACGCCGATTACGATTGGG 919
|||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||
Sbjct 1087 TTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGG 1146
Query 920 AATTTGAGTTTGTTAAGCTCGA-AAATTTCATTGGTAGAATATGCTACCAAGTGATGAGG 978
||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 1147 AATTTGAGTTTGTTAAGCTTGAGAACTTT-ATTGGTAGAATATGCTACCAAGTGATGAGG 1205
Query 979 CGGTGGCTGGTGAAAGATGAAAACTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATG 1038
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1206 CGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATG 1265
Query 1039 GACAATGC-GGGTCTTAAACCGAGTAGGGAAGAGCATGAGAGGCTTATATGGGCATGTAC 1097
|||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1266 GACAGTGCAGGG-GTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTAC 1324
Query 1098 GCGTGAAGAACATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTCC 1157
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1325 TCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTC 1384
Query 1158 TGAGATAAGTCTATCTGTCTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATG 1217
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATG 1444
Query 1218 GTGGGCAGCGTTAGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCGAACAATTT 1277
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1445 GTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTT 1504
Query 1278 GTCTTACGAATTAGTGGTCTCTCATTTCAATATTTTGCTGAGTGCAGCTAGTAGGAGAGG 1337
|||||| || ||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 1505 GTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGG 1564
Query 1338 GATATGGAGATGGGGAGTTAGGCTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCA 1397
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1565 GATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCA 1624
Query 1398 GAGCAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGC 1457
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 GAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGC 1684
Query 1458 GATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTAATCTCATACGG 1517
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1685 GATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGG 1744
Query 1518 TGCGCTGCTTAGTGCTCTTGAGAAAGGGAAGTTATATGATGAGGCGTTTCGAGTTTGGAA 1577
||| || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1745 TGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAA 1804
Query 1578 CCATATGATTAAGGTAGGTATTGAGCCAAATCTTTACGCGTACACGACAATGGCTTCAGT 1637
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1805 CCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGT 1864
Query 1638 TTTGACAGGACAGCAAAAATTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCATCAAA 1697
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1865 TTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAA 1924
Query 1698 AGGTATTGAGCCGAGCGTTGTGACTTACAATGCGGTTATAAGCGGTTGCGCGAGGAACGG 1757
|||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1925 GGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGG 1984
Query 1758 GTTAAGTGGGGTGGCTTACGAGTGGTTTCACAGAATGAGAGGTGAGAAGGTCGAACCTAA 1817
||||||||| |||||||| ||||||||||| ||||||| | ||||||| || || |||||
Sbjct 1985 GTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAA 2044
Query 1818 TGAGATAACCTACGAGATGTTGATCGAGGCTCTTGCGAATGATGCAAAGCCAAGGCTTGC 1877
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2045 CGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGC 2104
Query 1878 TTATGAGTTACATTTAAAGGCTCAAAACGAAGGGCT-AAAGCTCTCTTCTAAGCCATACG 1936
||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 2105 TTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAA-CTCTCTTCTAAGCCATATG 2163
Query 1937 ACGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTGTTGGGTC 1996
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2164 ATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTC 2223
Query 1997 CTCGACCACACAAAGAGAAGAGAGCTTAGTCTGAT-ACAATA--TTGAGATCCAATGTTA 2053
|||||||| ||||| |||| ||| |||||||||| | || | ||| | | || ||||
Sbjct 2224 CTCGACCAGACAAAAAGAATAGACCTTAGTCTGACGAAAACACATTGT-A-C-AAGGTTA 2280
Query 2054 CCGTGGGGTAAGGCACATCCAAGGACTCTTAAAGGCAAGAAAATTGCCATTGCAGGGAAG 2113
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2281 CCGTGGGGTAAGGCGCATCCAAGGACCCTTAAAGGCAAGAAAATTGCCATTACAGGGAAG 2340
Query 2114 AAGAAAGTTTCCAAGTAATCATCTT-CTTG 2142
||||||||||||||||||||| ||| ||||
Sbjct 2341 AAGAAAGTTTCCAAGTAATCA-CTTTCTTG 2369
Score = 200 bits (108), Expect = 5e-50
Identities = 168/194 (87%), Gaps = 16/194 (8%)
Strand=Plus/Plus
Query 1 ATGCAAGCTTTAAGCATTTGGCCATTAAAGTCTGGTCTTTTAGTTGGATCGAGATTGGAA 60
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 255 ATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAA 314
Query 61 TTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGTCATAAG--T-CTAGAAAGAGGCATTG- 116
|||||||||||||||||||||||||||||||| | |||| | |||||||||| | |||
Sbjct 315 TTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGC 374
Query 117 TTCTGCT-GAACAGGGTTGCTT---T-G--GTAG-A--ATCTCTAGCTTGATCTTGGTTT 166
|| | || ||||||| |||||| | | |||| | ||||||||||| ||||| ||||
Sbjct 375 TT-T-CTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTT 432
Query 167 CGAGTAATAGGAAA 180
||||||| ||||||
Sbjct 433 CGAGTAACAGGAAA 446
> AT5G14350.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:4627140-4628703 REVERSE LENGTH=726
Length=726
Score = 438 bits (237), Expect = 9e-122
Identities = 332/375 (89%), Gaps = 18/375 (5%)
Strand=Plus/Plus
Query 1437 AGCCTCTGAGACCACAGCTGCGATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAA 1496
||||| |||||| ||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 365 AGCCTATGAGACTTCAGCTGCGACCCAAATCTATAAAGCAATGGTTGACAACGGTGAAAA 424
Query 1497 GCCAACGGTAATCTCATACGGTGCGCTGCTTAGTGCTCTTGAGAAAGGGAAGTTATATGA 1556
||| |||| ||| | ||| | |||||||||||||||||||||||||||||
Sbjct 425 GCC-ACGG----GGCAT----T--GCT-C--AGTGCTCTTGAGAAAGGGAAGTTATATGA 470
Query 1557 TGAGGCGTTTCGAGTTTGGAACCATATGATTAAGGTAGGTATTGAGCCAAATCTTTACGC 1616
||||| ||| || ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 471 TGAGGTGTTACGGGTTTGGAACCATATGGTTAAGGTAGGGATTGAGCCAAATCTTTACGC 530
Query 1617 GTACACGACAATGGCTTCAGTTTTGACAGGACAGCAAAAATTCAATCTTTTGGATACCCT 1676
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 531 GTACACGACCATGGCTTCAGTTTTGACAGGACAGCAAAAACTCAATCTTTTGGATACCCT 590
Query 1677 TCTCAAGGAAATGGCATCAAAAGGTATTG--A-GCCGAGCGTTGTGACTTACAATGCGGT 1733
||||||||||||| | |||||||||||| | |||||||||||||||||||||||| ||
Sbjct 591 TCTCAAGGAAATGCCTTCAAAAGGTATTATTAAGCCGAGCGTTGTGACTTACAATGCTGT 650
Query 1734 TATAAGCGGTTGCGCGAGGAACGGGTTAAGTGGGGTGGCTTACGAGTGGTTTCACAGAAT 1793
||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 651 TATAAGCGGTTGCACAAGGAACGGATTAAGTGGTGTGGCTTACGAGTGGTTTCACAGAAT 710
Query 1794 GAGAGGTGAGAAGGT 1808
|||| ||||| |||
Sbjct 711 GAGAATTGAGA-GGT 724
Score = 126 bits (68), Expect = 8e-28
Identities = 78/82 (95%), Gaps = 3/82 (4%)
Strand=Plus/Plus
Query 1207 GCTAAGAAATGGTGGGCA--GCGTTAGAGATCTACGAGGATCTTCTTGACGAAGGACCTG 1264
||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 285 GCTAAGAAATGGT-GGCAGCGCGTTAGAGATGTACGAGGATCTTCTTGACGAAGGACCTG 343
Query 1265 AACCGAACAATTTGTCTTACGA 1286
||||||||||||||||||||||
Sbjct 344 AACCGAACAATTTGTCTTACGA 365
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 439 GAGAAGGGAGAATTACCTCTACAAGTCTATTGTGCTATGATTAGGGGTTTTGGCAAGGAC 498
||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 211 GAGAATGGAGAATTAACTCTACAAGTGTATTGTGCTATGATAAGGGGTTTTGGCAAGGAC 270
Query 499 AAGAGACTGAAG 510
||||||||||||
Sbjct 271 AAGAGACTGAAG 282
> AT5G14320.1 | Symbols: | Ribosomal protein S13/S18 family |
chr5:4617650-4618912 REVERSE LENGTH=839
Length=839
Score = 169 bits (91), Expect = 1e-40
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2075 AGGACTCTTAAAGGCAAGAAAATTGCCATTGCAGGGAAGAAGAAAGTTTCCAAGTAATCA 2134
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 594 AGGACTCTTAAAGGCAAGAAAATTGCTATTGCAGGGAAGAAGAAAGTTTCCAAGTAATCA 653
Query 2135 TCTTCTTGATTTCCTTCTTGTTCTGTAATACTCTTTTTAGTTT 2177
||||| |||| |||||||| |||||||||||||||||||||||
Sbjct 654 TCTTCATGATCTCCTTCTTCTTCTGTAATACTCTTTTTAGTTT 696
Score = 65.8 bits (35), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 2040 GAGATCCAATGTTACCGTGGGGTAAGGCACATCCAAGG 2077
|||||||| |||||||||||||||||||||||||||||
Sbjct 519 GAGATCCAGTGTTACCGTGGGGTAAGGCACATCCAAGG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107981372295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5