BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488280

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14410.1 | Symbols:  | unknown protein; Has 23 Blast hits to...   769    0.0  


> AT5G14410.1 | Symbols:  | unknown protein; Has 23 Blast hits 
to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:4646781-4647444 REVERSE LENGTH=564
Length=564

 Score =  769 bits (416),  Expect = 0.0
 Identities = 440/452 (97%), Gaps = 0/452 (0%)
 Strand=Plus/Plus

Query  1    TCTAATCCATTTTCCATGGCTTCCTCTCCCAAAATCACTAATCTCCCTTACAAGAGGCTT  60
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  32   TCTAATCCATTTTCCATGGATTCCTCTCCCAAAATCACTAATCTCCCTTACAAGAGGCTT  91

Query  61   TCTCTAGAAGATGATGTCTTCGGCGAAACAACAAGAAGAAGATCGTCATTCTATTCTTAC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  92   TCTCTAGAAGATGATGTCTTCGGCGAAACAACAAGAAGAAGATCGTCATTCTATTCTTAC  151

Query  121  AGGTTCAGGAGAGTGGTGTCACTGGGAGGAAGAAGGAGGATTAGGGTTAGAGTTAAGATC  180
            ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  152  AGGTTCAAGCGAGTGGTGTCATTGGGAGGAAGGAGGAGGATTAGGGTTAGAGTTAAGATC  211

Query  181  CGAAGACTTAGAGGATTTGTGAGGAAGAAAGCGAATAGGGTCAAAACTGGAATTATAAAA  240
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct  212  CGAAGACTTAGAGGATTTGTGAGGAAGAAAGCGAATAGGGTAAAAACTGGAATTTTAAAA  271

Query  241  ATATTGAAGAGGTTGAAGGAGAGTCAATCACACTTTGGTGATCTCTTTGCTGGTAATTAC  300
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  272  ATATTGAAGAGGTTGAAGGAGAGTCAATCACACTTTGGTGATCTCTTTGCCGGTAATTAC  331

Query  301  CTTTTCATGCAAGTTAATCCTTCTTCTCTTAACACTAAGTATGTCTTCGACAAATCTTTT  360
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  332  CTTTTCATGCAAGTTAATCCTTCTTCTCTTAACGCTAAGTATGTCTTCGACAAATCTTTT  391

Query  361  CAAAGCCAAAATGGTAACTTCCCCTCTAGATTATCTCTTCCTAGAGTTCTTATGTAAAGA  420
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  CAAGGCCAAAATGGTAACTTCCCCTCTAGATTATCTCTTCCTAGAGTTCTTATGTAAAGA  451

Query  421  CTGATAAACAATAACTATAGTTATGTTTCTGT  452
            | |||||||| |||||||||||||||||||||
Sbjct  452  CGGATAAACATTAACTATAGTTATGTTTCTGT  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21514596572


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5