BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488284
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14420.1 | Symbols: RGLG2 | RING domain ligase2 | chr5:46481... 2525 0.0
AT3G01650.1 | Symbols: RGLG1 | RING domain ligase1 | chr3:24201... 832 0.0
> AT5G14420.1 | Symbols: RGLG2 | RING domain ligase2 | chr5:4648111-4650698
REVERSE LENGTH=1786
Length=1786
Score = 2525 bits (1367), Expect = 0.0
Identities = 1529/1602 (95%), Gaps = 31/1602 (2%)
Strand=Plus/Plus
Query 161 AGGGTACTGAATTGACTTAAGAGGTTTGATTTGAATCTAGAAAGGTTTAGTTTTTTGTTA 220
||||||| ||| |||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 70 AGGGTACGGAACTGACCTGAGAGGTTTGATTTGAATCTAAAAAGGTTTAGTTTTTTGTTA 129
Query 221 AGTTTGATGGGGACAGGGAATTCTAAAGAGAACTGGAGACAGTCATCGTTTAGGTCAGCT 280
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 130 AGTTTGATGGGGACAGGGAATTCTAAAGAAAACTGGAGACAGTCATCGTTTAGGTCAACT 189
Query 281 TCAGCTTCATCAGCATCACCATCTTCATCTTCATGGGCTTCTCAACAAAGTTATCCTCAG 340
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TCTGCTTCATCAGCATCACCATCTTCATCTTCATGGGCTTCTCAACAAAGTTATCCTCAG 249
Query 341 TATGGTGCAGAAAGCTACAATTATCCTCCTCCACCTTCATATGCTCC-ACCTCCTGAGTA 399
||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 250 TATGGTGCAGAAAGCTATAATTACCCTCCTCCACCTTCTTATGC-CCAACCTCCTGAGTA 308
Query 400 TACGCAAACGCAACCTCCTCCACCT-T-TA-TA-T-AG---TACTCAG---C--CTTATT 446
||||| ||| | |||||||| | | || || | || ||||| | | ||||||
Sbjct 309 TACGC-AAC-C-TCCTCCTCC-TTTATATAGTACTCAGCCTTACTCTGCTCCGTCTTATT 364
Query 447 CTGCACCGCCTTCTCAAAGCTATGGTAGTGATAATAAGAAGAGGTTGGAGCGCAAGTATT 506
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 365 CTGCACCGCCTTCTCAAAGTTATGGTAGTGATAATAAGAAGAGGTTGGAGCGCAAGTATT 424
Query 507 CGAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCTTGCACGGGCAG 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 425 CGAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCTTGCACGGGCGG 484
Query 567 GTCTAGAATCATCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAATGGACAG 626
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GTCTAGAATCTTCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAATGGACAG 544
Query 627 GGGCCAGGTCCTTCAATAGGAAAAGCTTACATTTCATAGGCAGTAGTCCCAATCCTTACG 686
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 545 GGGCCAGGTCCTTCAATAGGAAAAGCTTACACTTCATAGGCAGTAGTCCCAATCCTTATG 604
Query 687 AACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGACAACTTGATTC 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGACAACTTGATTC 664
Query 747 CATGTTATGGTTTTGGAGATGCATCAACACATGACCAAGACGTGTTCAGTTTCAATTCGG 806
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 665 CATGTTATGGTTTTGGAGATGCATCAACACATGATCAAGACGTGTTCAGTTTCAATTCAG 724
Query 807 AGGATAGATTCTGTAATGGATTTGAGGAAGTACTTGCTCGGTATAAAGAGATCGTGCCTC 866
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||
Sbjct 725 AGGATAGATTCTGTAATGGATTTGAGGAAGTACTTTCCCGGTATAAGGAGATCGTGCCTC 784
Query 867 AACTTAAGCTCGCAGGGCCAACCTCGTTTGCTCCGATCATCGATATGGCCATGACCATTG 926
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 785 AACTTAAGCTTGCAGGGCCAACCTCCTTTGCTCCGATCATCGATATGGCCATGACCATTG 844
Query 927 TTGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGATGGACAGGTTACAA 986
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 845 TTGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGATGGGCAGGTTACAA 904
Query 987 GAAGTGTTGACACGGAAAATGGACAGTTAAGTCCGCAGGAACAGAAGACAGTAGATGCGA 1046
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 905 GAAGTGTTGACACGGAAAATGGACAGTTAAGTCCACAAGAACAGAAGACGGTAGATGCGA 964
Query 1047 TCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTGGGGGATGGACCTT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTGGGGGATGGACCTT 1024
Query 1107 GGGACATGATGAGGGAATTTGACGATAATATCCCGGCCCGAGCATTTGATAACTTCCAAT 1166
||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct 1025 GGGACATGATGAGGGAATTTGACGATAATATTCCGGCCAGAGCGTTTGATAACTTCCAAT 1084
Query 1167 TCGTGAACTTCACAGAGATCATGGCAAAGAACAAAGCTCAATCCTTGAAGGAAACAGAGT 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TCGTGAACTTCACAGAGATCATGGCAAAGAACAAAGCTCAATCCTTGAAGGAAACAGAGT 1144
Query 1227 TTGCCCTTTCTGCTCTCATGGAGATTCCTCAACAGTACAAGGCGACAATAGAGCTTAACC 1286
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1145 TTGCCCTTTCTGCTCTCATGGAGATTCCTCAACAATACAAGGCGACAATAGAGCTTAACC 1204
Query 1287 TTTTAGGAAGAAGAAATGGGA-ATATCCCGGAGAGATTCCCTCTTCCGCCTCCAATGCAC 1345
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 1205 TTTTAGGAAGAAGAAATGG-ATATATCCCGGAGAGATTCCCTCTTCCGCCTCCAATGCGC 1263
Query 1346 GGTGGATCATCGTCCTACAAGAGTCCAAAGCCTTTC-CGTCCTCCAAGTTTCAAACCGAG 1404
|||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct 1264 GGTGGATCATCGTCCTACAACAGTCCAAAGCCTT-CACGTCTTCCAAGTTTCAAACCGAG 1322
Query 1405 TGTTCCTCCTCATCCAACTGAAGAAAGCTATCACGTAAGGTCTAGTCACGTCCCACCCCC 1464
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1323 TGTTCCTCCTCATCCAACTGAAG---GCTATCACGTAAGGTCTAGTCCCGTCCCACCCCC 1379
Query 1465 TACAAACTCTGCTTCTGATAACCAGCTATGTCCGATTTGTTTGAGCAACCCGAAAGACAT 1524
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TACAAGCTCTGCTTCTGATAACCAGCTATGTCCGATTTGTTTGAGCAACCCGAAAGACAT 1439
Query 1525 GGCCTTTGGTTGTGGCCATCAGACTTGTTGCGAGTGTGGACCAGGTCTTCAAATGTGTCC 1584
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1440 GGCCTTTGGTTGTGGCCATCAGACTTGTTGCGAGTGTGGACCAGATCTTCAAATGTGTCC 1499
Query 1585 GATTTGCCGTGCACCAATCCAGACAAGAATAAAGCTCTACTAACAAACAAGTAGACCAGA 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GATTTGCCGTGCACCAATCCAGACAAGAATAAAGCTCTACTAACAAACAAGTAGACCAGA 1559
Query 1645 --TCGACGACCCTTCTCTCT-TGTTCATCTTCTTACAACTTCTTTTGGGAATTTAGTTTG 1701
|||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 1560 CATCGACGACCCTTCTCTCTCT-TTCATCTTCTTTCAACTTCTTTTGGGAATTTAGTTTG 1618
Query 1702 A-TCTAATCACTGAAATTTCTCCGAGAAAGATCGGAtctttt 1742
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AATCTAATCACTGAAATTTCTCCGAGAAAGATCGGATCTTTT 1660
> AT3G01650.1 | Symbols: RGLG1 | RING domain ligase1 | chr3:242011-245268
FORWARD LENGTH=1785
Length=1785
Score = 832 bits (450), Expect = 0.0
Identities = 733/868 (84%), Gaps = 26/868 (3%)
Strand=Plus/Plus
Query 502 GTATTCGAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCT-TGCAC 560
|||||| ||||| || ||| | ||||||||||| ||||||| | |||||||| || |
Sbjct 496 GTATTCCAAAATATCGGATAACTACTCTTCTTTACTGCAGGTGTCCGAGGCTCTAGGC-C 554
Query 561 GGGCAGGTCTAGAATCATCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAAT 620
| |||||||| ||||| || ||||| |||||||||||||||||||| ||||| || ||||
Sbjct 555 GTGCAGGTCTTGAATCTTCTAATCTAATCGTTGGTATTGATTTCACCAAGAGCAATGAAT 614
Query 621 GGACAGGGGCCAGGTCCTTCAATAGGAAAAGCTTACATTTCA-TAG-GCAGTAGTCCC-A 677
|||||||||||| ||||||||||||||||||||| || ||| | | ||| || ||| |
Sbjct 615 GGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTGCA--TCACTTGAGCAATA-CCCCGA 671
Query 678 ATCCTTACGAACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGACA 737
|||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 672 ATCCATACGAGCAAGCAATTACTATCATTGGAAGAACCTTAGCCGCCTTTGACGAGGATA 731
Query 738 ACTTGATTCCATGTTATGGTTTTGGAGATGCATCAACACATGACCAAGACGTGTTCAGTT 797
|||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 732 ACTTAATTCCTTGTTATGGTTTTGGAGACGCATCAACTCATGATCAAGACGTGTTTAGTT 791
Query 798 TCAATTCGGAGG-ATAGATTCTGTAATGGATTTGAGGAAGTACTTG-CTCGGTATAAAGA 855
|| || | |||| | ||||||||||||||||||||||||||| ||| |||| |||| |||
Sbjct 792 TCTATCCAGAGGGA-AGATTCTGTAATGGATTTGAGGAAGTA-TTGGCTCGTTATAGAGA 849
Query 856 GATCGTGCCTCAACTTAAGCTCGCAGGGCCAACCTCGTTTGCTCCGATCATCGATATGGC 915
|| || ||||| |||||||||||||| ||||| || ||||| |||||||| || |||||
Sbjct 850 AATTGTACCTCAGCTTAAGCTCGCAGGACCAACTTCTTTTGCCCCGATCATTGAAATGGC 909
Query 916 CATGACCATTG-TTGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGATG 974
||||| | || ||||||||||| |||| |||||||| || ||||||| ||||| ||||
Sbjct 910 AATGAC-AGTGGTTGAGCAGAGTAGTGGCCAATATCATGTGTTAGTGATTATAGCTGATG 968
Query 975 GACAGGTTACAAGAAGTGTTGACACGGAAAATGGACAGTTAAGTCCGCAGGAACAGAAGA 1034
| ||||| ||||||||||| || || ||| | || | | |||||||||| ||||||||||
Sbjct 969 GCCAGGTCACAAGAAGTGTCGATACCGAACACGGGCGGCTAAGTCCGCAAGAACAGAAGA 1028
Query 1035 CAGTAGATGCGATCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTGG 1094
|||||||||| || ||| |||| |||| |||||| | ||||| |||||||| ||||| |
Sbjct 1029 CAGTAGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCAATAGTCTTAGTTGGGGTCG 1088
Query 1095 GGGATGGACCTTGGGACATGATG-AGGGAATTTGACGATAATATCCCGGCCCGAGCATTT 1153
|||||||||| |||||||||||| ||| ||||||| ||||| || || |||||||| |||
Sbjct 1089 GGGATGGACCATGGGACATGATGCAGG-AATTTGATGATAACATACCTGCCCGAGC-TTT 1146
Query 1154 -GATAACTTCCAATTCGTGAACTTCACAGAGATCATGGCAAAGAACAAAG-CTCAATCCT 1211
||||||||||| || ||||||||||||||||||||| |||||||||||| | || || |
Sbjct 1147 CGATAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAAGAACAAAGAC-CAGTC-T 1204
Query 1212 TG-AAGGAAACAGAGTTTGCCCTTTCTGCTCTCATGGAGATTCCTCAACAGTACAAGGCG 1270
| ||||| ||||||||||| || ||||||||||||||||| |||| ||||||||| ||
Sbjct 1205 CGGAAGGAGACAGAGTTTGCGCTGTCTGCTCTCATGGAGATCCCTCCACAGTACAAAGCA 1264
Query 1271 ACAATAGAGCTTAACCTTTTAGGAAG-AAGAAATGGGAATATCCCGGAGAGATTCCCTCT 1329
|| |||||||||||||||||||| | ||||||||| |||||||| ||||| |||| ||
Sbjct 1265 ACGATAGAGCTTAACCTTTTAGGG-GTAAGAAATGGAAATATCCCACAGAGAATCCCACT 1323
Query 1330 TCCGCCTCCAATGCACG-GTGGATCATC 1356
|||||| || |||| | ||||||||||
Sbjct 1324 TCCGCCACCGGTGCA-GAGTGGATCATC 1350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5