BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488294
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14530.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1670 0.0
> AT5G14530.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:4684620-4686909 REVERSE LENGTH=1199
Length=1199
Score = 1670 bits (904), Expect = 0.0
Identities = 1014/1066 (95%), Gaps = 11/1066 (1%)
Strand=Plus/Plus
Query 1 TTTTCTCTTGCTTCACTGTTAATCGAGCTTGACGATGTCTTTGACGGAGCTAGACGACGG 60
||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 11 TTTTCTCGTGCTTCACTGATAATCCAGCTTGACGATGTCGTTGACGGAGCTAGACGACGG 70
Query 61 ACTGGTGCGCAGGATGGCCATCGGCGCAGTCTTCTCTGATTTCGGAGGGAAGATACATTC 120
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 71 ACTGGTTCGCAGGATGGCCATGGGCGCAGTCTTCTCTGATTTTGGAGGGAAGATACATTC 130
Query 121 GGTGGGTTTCCATAGGACTGATGATCTATTGGTTACATCCAGCGAAGATGATTCACTTCG 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 131 GGTGGGTTTCCATAGGACTGATGATCTATTGGTCACATCCAGCGAAGATGATTCACTTCG 190
Query 181 TCTCTTCGATATCGCCAACGCTAAACAGCTCAAGATTACATACCATAAGAAACATGGAAC 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 191 CCTCTTCGATATCGCCAACGCTAAACAGCTGAAGATTACATACCATAAGAAACATGGCAC 250
Query 241 CGATCGTGTATGCTTTACCCATCATCCCAGCTCTCTAATTTGCTCTTCTCGATACAATTT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 251 CGATCGTGTATGCTTTACCCATCATCCTAGCTCTCTAATTTGCTCTTCTCGATACAATTT 310
Query 301 GGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAACCGGATCCTTCGCTA 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 311 GGAGTCCACTGGTGAATCCTTGAGATATCTCTCAATGTATGATAATCGGATCCTACGCTA 370
Query 361 CTTTAAAGGGCATAAAGACAGGGTTGTATCGCTTTGTATGTCTCCTATTAATGATAGCTT 420
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 371 CTTTAAAGGGCATAAAGACAGGGTTGTATCACTTTGTATGTCTCCTATAAATGATAGCTT 430
Query 421 CATGTCTGGTTCTCTCGACCGAAGTGTCAGACTCTGGGATCTTCGTGTAAATGCCTGCCA 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 431 CATGTCTGGTTCTCTCGACCGAAGTGTTAGACTCTGGGATCTTCGTGTAAATGCCTGCCA 490
Query 481 GGGAATTCTACATCTACGAGGTAGGCCTGCAGTTGCGTATGACCAACAAGGCCTCGTGTT 540
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 491 GGGAATTCTACATCTACGTGGTAGACCTGCAGTTGCGTATGACCAACAAGGCCTTGTGTT 550
Query 541 TGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCCGGTGTTATGACAAGGG 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 551 TGCAATTGCAATGGAAGGAGGTGCTGTTAAATTATTTGATTCCAGGTGTTATGACAAGGG 610
Query 601 TCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATCAAATTCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 611 TCCCTTTGACACATTTCTGGTGGGTGGGGATACTGCTGAGGTTAACGATATAAAATTCAG 670
Query 661 TAACGATGGAAAATCCATGCTCCTAACGACTACAAATAATAATATCTACGTTCTTGATGC 720
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 671 CAACGATGGGAAATCCATGCTCCTAACGACTACAAATAACAATATCTACGTTCTTGATGC 730
Query 721 ATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCATCACAGGGCACACCCATAGA 780
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 731 ATATCGTGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACACCCATAGA 790
Query 781 AGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGATCAGGTGATGGAACCTTACA 840
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 791 GGCCACCTTCACACCAGATGGCAAGTATGTTCTGTCAGGTTCAGGTGATGGAACCTTACA 850
Query 841 TGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGT 910
Query 901 GTCATGTCTGAAATGGGCACCTCGTAGAGCCATGTTCGTTGCAGCTTCTACGGTTCTCAC 960
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 911 GTCGTGTCTGAAATGGGCACCACGTAGAGCCATGTTCGTTGCTGCTTCTACGGTTCTCAC 970
Query 961 ATTCTGGATCCCCAACGACGGTGAGGCACCAGCCCCCGCGGATCCTGCTGCCGACCAACA 1020
|||||||||||| ||||||||||| ||||||||||||| |||||| || |||| |||||
Sbjct 971 ATTCTGGATCCCAAACGACGGTGAATCACCAGCCCCCGCCGATCCTCCTACCGATCAACA 1030
Query 1021 AGCTCTTTCTCAGTGACAACATATATATGTTTCCATTATTCACTTG 1066
| | |||||| |||||||| ||||||||||| ||||||
Sbjct 1031 A-C--------AGTGACGACATATAT--GTTTCCATTATGCACTTG 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5