BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488300 Length=1746 Score E Sequences producing significant alignments: (Bits) Value AT5G14590.1 | Symbols: | Isocitrate/isopropylmalate dehydrogen... 2497 0.0 > AT5G14590.1 | Symbols: | Isocitrate/isopropylmalate dehydrogenase family protein | chr5:4703298-4706738 REVERSE LENGTH=1804 Length=1804 Score = 2497 bits (1352), Expect = 0.0 Identities = 1546/1633 (95%), Gaps = 39/1633 (2%) Strand=Plus/Plus Query 1 CTCAGAGCACGCTTTAGCAATAAACTTG--G--CG-AAGCT--A-TTTCA--GATTCAGT 50 |||||||||| ||||||||||||||||| | || ||||| | |||| |||||||| Sbjct 13 CTCAGAGCACACTTTAGCAATAAACTTGCCGACCGAAAGCTGCAGATTCACTGATTCAGT 72 Query 51 GGTCGAAGTTGA-AGGAAAGATTAGAGGTCGGAGTATCGGATGCTGAATAAGCTCACGCA 109 | |||||||||| || | || ||||||||||| |||||||||||||||||||||||| Sbjct 73 GATCGAAGTTGAGAGTTTGGGTT-GAGGTCGGAGTCTCGGATGCTGAATAAGCTCACGCA 131 Query 110 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 191 Query 170 TTTATCGTCTTCGTTCGCTTCTACTAGGAATTCATGGAAGTCTCCGGGATTTCTCAGTTC 229 ||||||||||||||||| || | | ||| | | ||||||| ||||| Sbjct 192 TTTATCGTCTTCGTTCG-TT-T-C------TTC---G-A--------GATTTCTTAGTTC 230 Query 230 CGGTATATTCTTTGGTGGCGCTTCGAGGAATCGTGTTTCTTTTCACGTTCAGTCTCATCG 289 ||||||||||| | ||||||||||||||||||| || |||||| |||||||| |||||| Sbjct 231 CGGTATATTCTCTAGTGGCGCTTCGAGGAATCGCGTGACTTTTCCCGTTCAGTTTCATCG 290 Query 290 CGCATCAGCTGTTCGATGTTTTGCCTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 349 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 291 CGCATCAGCTGTTCGATGTTTTGCTTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 350 Query 350 TCCTATCGTTGAAATGGACGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 409 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 351 TCCTATCGTTGAAATGGATGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 410 Query 410 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 470 Query 470 TCGTGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 529 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 TCGCGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 530 Query 530 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 531 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 590 Query 590 GAAATCAATGTGGAGGAGTCCTAATGGGACAATCAGAAACATTTTAGATGGTACTGTATT 649 |||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||| Sbjct 591 GAAATCAATGTGGAGGAGTCCTAATGGGACGATCAGAAACATTCTAGATGGAACCGTATT 650 Query 650 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGAAAAAGCCTAT 709 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 651 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGGAAAAGCCTAT 710 Query 710 ATGCATTGGTAGGCATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 769 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 ATGCATTGGTAGACATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 770 Query 770 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAAAAGATGGAAACGCACCTGTGGAGCTAGA 829 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 771 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAGAAGATGGAAACGCACCTGTGGAGCTAGA 830 Query 830 TGTATATGATTTCAAAGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 889 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 TGTATATGATTTCAAGGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 890 Query 890 TCGAGCTTTTGCTGAGTCATCTATGGCGATTGCATTAACTAAGAAATGGCCACTATACTT 949 | |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 891 TAGAGCTTTTGCTGAGTCATCTATGGCGATGGCATTAACTAAGAAATGGCCATTATACTT 950 Query 950 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTCAAGGACATATTTCAAGA 1009 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 951 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTTAAGGACATATTTCAAGA 1010 Query 1010 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTATGAGCACCG 1069 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1011 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTACGAGCACCG 1070 Query 1070 CTTGATCGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGGGGCTATGTCTGGGCATG 1129 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1071 GTTGATTGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGTGGCTATGTCTGGGCTTG 1130 Query 1130 CAAAAACTACGATGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1189 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 CAAAAACTACGACGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1190 Query 1190 CCTCATGACCTCTGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1249 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 CCTCATGACCTCCGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1250 Query 1250 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1310 Query 1310 CATTGCCTCCATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1369 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1311 CATAGCCTCAATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1370 Query 1370 CGAAAAATTAATGGATTTCGTGAAGAAGCTAGAGTCGTCATGTGTAAACACTGTTGAGAC 1429 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1371 CGAGAAATTAATGGATTTCGTGAAGAAGCTCGAGTCGTCATGTGTAAACACTGTTGAGAC 1430 Query 1430 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGCCCCAAGGTGAGTAGGGATTT 1489 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1431 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGTCCCAAGGTGAGTAGGGATTT 1490 Query 1490 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCGAAGCTCAAAACACAGCTCAA 1549 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1491 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCCAAGCTCAAAACACAGTTCAA 1550 Query 1550 AGAGCTTCCTCTTGTCTGAGTCTGACCATTCCTGGGAAGTGGGAACAATACAAAAATAAT 1609 ||||||||||||||||||| | | ||||||||||| ||||||||||||||||||||| Sbjct 1551 AGAGCTTCCTCTTGTCTGA--C---C-ATTCCTGGGAATTGGGAACAATACAAAAATAAT 1604 Query 1610 GCTCGCAACAATT 1622 |||||||| |||| Sbjct 1605 GCTCGCAATAATT 1617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86344937400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5