BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488305 Length=1626 Score E Sequences producing significant alignments: (Bits) Value AT5G14640.1 | Symbols: ATSK13, SK13 | shaggy-like kinase 13 | c... 2204 0.0 > AT5G14640.1 | Symbols: ATSK13, SK13 | shaggy-like kinase 13 | chr5:4719077-4722279 REVERSE LENGTH=1719 Length=1719 Score = 2204 bits (1193), Expect = 0.0 Identities = 1374/1458 (94%), Gaps = 25/1458 (2%) Strand=Plus/Plus Query 13 CATCA-GAAGAAAAAGAGAGATTTGCCATTTTCGGCAAGGAAGAGTCTTTTATTCTAGGG 71 ||||| |||| || |||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct 65 CATCACGAAG-AAGAGAGAGATTTGCCATTTTCGGCAAGG-A-AGTGTTTTATTCTAGGG 121 Query 72 TTTCTCTAGTTGCTGCTGCGTAAACAAGATGGTGAACTGAAATTGCGGCGGAGACTTTTC 131 |||||||| | ||||||||| ||||||||||| | |||||||||||||| ||||||| Sbjct 122 CTTCTCTAG-T--TGCTGCGTAGACAAGATGGTGGAGTGAAATTGCGGCGGTGACTTTT- 177 Query 132 AGACAGATTGACGAATTGAATCAAAGTTCTTG---A-ATATGGCTTCTGTGGGAACATTA 187 ||||||||| |||||||| |||| ||||| | ||||||||||||||||||||||| Sbjct 178 ---CAGATTGACAAATTGAATTAAAGATCTTGAATACATATGGCTTCTGTGGGAACATTA 234 Query 188 CCGGCTTCTTCTATGGCTACAAAACAAAGCAATGCTTCCATATGCGCTGAAAAACTACCT 247 || ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 235 CCAGCTTCTTCTATGGCTACAAAACAAAGCAATGCTTCTATATGCGCTGAAAAATTACCT 294 Query 248 GAAGGGATTAATGAGATGAAGATAAAAGATGATAAGGAAATGGAAGCAGCTGTGGTTGAT 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 295 GAAGGGATTAATGAGATGAAGATAAAAGATGATAAGGAAATGGAAGCAGCTGTGGTTGAT 354 Query 308 GGGAATGGAACTGAAACAGGTCACATTATTGTTACAACTATTGGTGGTAAAAATGGTCAG 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 GGGAATGGAACTGAAACAGGTCACATTATTGTTACAACTATTGGTGGTAAAAATGGTCAG 414 Query 368 CCTAAACAGACCATAAGTTATATGGCAGAGCGCATCGTTGGACAAGGTTCTTTTGGAATT 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 CCTAAACAGACCATAAGTTATATGGCAGAGCGCATCGTTGGACAAGGTTCTTTTGGAATC 474 Query 428 GTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAAGAAAGTTTTGCAA 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 GTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAAGAAAGTTTTGCAA 534 Query 488 GACAAAAGATACAAGAACCGTGAGCTGCAGACGATGAGGCTTCTTGATCACCCTAATGTT 547 ||||| ||||||||||| || ||||||||||| ||| | ||||||||||||||||||||| Sbjct 535 GACAAGAGATACAAGAATCGGGAGCTGCAGACAATGCGTCTTCTTGATCACCCTAATGTT 594 Query 548 GTATCCCTCAAGCATTGTTTTTTCTCAACGACCGAAAAAGATGAGCTGTATCTCAATTTG 607 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || Sbjct 595 GTATCCCTCAAGCATTGTTTTTTCTCAACGACTGAAAAAGATGAGCTCTATCTCAATCTG 654 Query 608 GTCCTTGAATACGTTCCTGAGACTGTATATCGCGTCTCAAAGCACTACAGTCGGGCAAAC 667 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 655 GTCCTTGAATACGTTCCTGAGACTGTCTATCGCGTCTCAAAGCACTATAGTCGGGCAAAC 714 Query 668 CAGAGGATGCCCATGATATATGTTAAACTCTACACTTATCAGATTTGCAGAGCTTTGGCT 727 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 715 CAGAGGATGCCCATTATATATGTTAAACTCTATACTTATCAGATTTGCAGAGCTTTGGCT 774 Query 728 TATATTCATGGTGGAGTAGGAGTCTGCCACAGAGACATAAAACCACAGAATCTTCTGGTT 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 TATATTCATGGTGGAGTAGGAGTCTGCCACAGAGACATAAAACCACAGAATCTTCTGGTT 834 Query 788 AATCCTCATACGCATCAAGTCAAGCTCTGCGATTTTGGTAGCGCAAAAGTTCTGGTCAAA 847 ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||| Sbjct 835 AATCCTCATACGCATCAGGTCAAACTATGCGATTTTGGTAGCGCAAAAGTTCTGGTTAAA 894 Query 848 GGCGAACCAAACATCTCTTACATCTGCTCCCGTTACTATCGAGCGCCTGAACTTATATTT 907 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 895 GGCGAGCCAAACATCTCATACATCTGCTCCCGTTACTATCGAGCACCTGAACTTATATTT 954 Query 908 GGAGCCACAGAGTATACGACAGCTATTGACATATGGTCTGCAGGCTGTGTTCTTGCTGAA 967 ||||| ||||| ||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 955 GGAGCTACAGAATATACAACAACAATTGACATATGGTCTGCAGGCTGTGTTCTTGCTGAA 1014 Query 968 TTGCTCCTTGGTCAGCCTTTATTTCCAGGTGAGAGTGGAGTCGACCAGCTAGTCGAGATA 1027 ||||| || || |||||| |||||||||||||||||||||| ||||||||||| |||||| Sbjct 1015 TTGCTTCTGGGACAGCCTCTATTTCCAGGTGAGAGTGGAGTTGACCAGCTAGTTGAGATA 1074 Query 1028 ATTAAGGTTCTTGGAACACCAACCCGGGAGGAAATCAAATGCATGAATCCAAATTACACT 1087 || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1075 ATAAAGGTTCTTGGAACACCAACACGGGAGGAAATCAAATGCATGAATCCAAACTACACA 1134 Query 1088 GAATTCAAATTCCCTCAAATAAAGGCTCATCCTTGGCACAAAATATTCCATAAGCGTACA 1147 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 GAATTCAAATTCCCGCAAATAAAGGCTCATCCTTGGCACAAAATATTCCATAAGCGTACA 1194 Query 1148 CCTCCAGAAGCTGTAGACCTCGTCTCAAGACTTCTCCAGTATTCTCCAAACCTCAGATCA 1207 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1195 CCTCCAGAAGCTGTAGACCTTGTCTCAAGACTTCTCCAGTATTCTCCAAACCTCAGATCA 1254 Query 1208 ACCGCTATGGAGGCGATAGTTCACCCGTTCTTCGATGAGCTACGTGATCCCAATACACGT 1267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 ACCGCTATGGAGGCGATAGTTCACCCGTTCTTCGATGAGCTACGTGATCCCAATACACGT 1314 Query 1268 CTTCCTAATGGTCGC-CCATTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGG 1326 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 CTTCCTAATGGTCGTGCC-TTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGG 1373 Query 1327 AGCAAGTTCAGAGTTGTTTTCCAAGCTTATACCTGACCACGCCAGAAAACAATGTTCCTT 1386 |||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1374 AGCAAGTTTAGAGTTGTTGTCCAAGCTTATACCTGACCACGCCCGAAAACAATGTTCCTT 1433 Query 1387 CCTCGctctctaaatctctctctctctctctctctctctatatatatatatatatGTGTG 1446 ||||||||||||||||||| || |||||||||| |||||||| | | | |||||| Sbjct 1434 CCTCGCTCTCTAAATCTCT-TC-CTCTCTCTCT------ATATATATGTGTGTGTGTGTG 1485 Query 1447 TATGTACACATGCATATA 1464 |||||||||||||||||| Sbjct 1486 TATGTACACATGCATATA 1503 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1465 TAAGTAATGGAGATAGCTTCTCAGGATT 1492 |||||||||||||||||||||||||||| Sbjct 1520 TAAGTAATGGAGATAGCTTCTCAGGATT 1547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80320872000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5