BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488313
Length=2623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14720.1 | Symbols: | Protein kinase superfamily protein | ... 2128 0.0
> AT5G14720.1 | Symbols: | Protein kinase superfamily protein
| chr5:4747860-4753592 REVERSE LENGTH=2843
Length=2843
Score = 2128 bits (1152), Expect = 0.0
Identities = 1296/1362 (95%), Gaps = 24/1362 (2%)
Strand=Plus/Plus
Query 1 CAGACGACAGAAAAGCTAACAACACAAGAGGAGGAGAGAAACTC---AA-TAAC------ 50
|||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1 CAGACGACAGAAAAGCTAAC--CACAAGAGGAGGAGAGAAACTCGATAACAAACAAGAGA 58
Query 51 ----G-AA-CAAGATTCTTTAATCTAATCTCGTGCTTCCAATTTAAATAATTTTGTCTCC 104
| || | ||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 59 AAGAGAAAGCGAGATTCTAAAATCTAATCTCGTGCTTCCAATTCAAATAATTTTGTCTCC 118
Query 105 TTAGCGGATCGATTGCAGATTATCAAGCTCCGCCGTCGCCTCCGCCGCAATCGACGGCGG 164
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 119 TTAGCGGATCGATCGTAGATTATAAAGCTCCGCCGTCGCCTCCGCCGCAATCGACGGCGG 178
Query 165 TGTCTACGTCGCTTTCGATTCGTGCGTAACAGGAGCAGCAGCAGCAGAAGAAGTCAGCTT 224
||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||
Sbjct 179 TGTCTACGTCGCTTTCGTTTCGTGCGTAACAGGAGGAGCAGCAGCAAAATAAGTCAGCTT 238
Query 225 AAGTAACGCCGCCTTTGATTTGACTTGAGATAAGT-TTGTTGGTGATATGGCATTGATGA 283
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 239 AAGTAACGCCGTCTTTGATTTGACTTGAGATAAGTATT-TTGGTGATATGGCATTGATGA 297
Query 284 TGTTTCCGTATTTGCTCGGCGTTGAAGAAAAGTAAAATGCTGGCGAATTGGAAGAAACCA 343
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 TGTTTCCGCATTTGCTCGACGTTGACGAAAAGTAAAATGCTGGCGAATTGGAAGAAACCA 357
Query 344 CGCACAGATTGATGCTCTCTTCAGTCGACCTCTTTTGTATATTTACTGAAACTTACGGGG 403
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 358 CATACAGATTGATGCTCTCTTCAGTCGACCTCTTTTGTAAATTTGTTGAAACTTACGGGG 417
Query 404 TCGAAGGTGTGTAGC--ATATGCTTTAAGAAGATAAAAAAGTGAAAATTATGGAATCGGG 461
||||||||||||||| ||||||| ||||||||| | ||||| |||||||||||||||||
Sbjct 418 TCGAAGGTGTGTAGCATATATGCTATAAGAAGATTATAAAGTAAAAATTATGGAATCGGG 477
Query 462 TTCAGAGAAAAAGTTTCCTCTCAATGCAAAAGACTACAAGTTATATGAAGAAATTGGAGA 521
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCAGAGAAAAAGTTCCCTCTCAATGCAAAAGACTACAAGTTATATGAAGAAATTGGAGA 537
Query 522 TGGTGTCAGTGCGACAGTGCACAGAGCTTTGTGCATACCGCTTAATGTGGTAGTTGCTAT 581
||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 538 TGGTGTCAGTGCGACTGTGCATAGAGCTTTGTGTATACCGCTTAATGTGGTAGTTGCTAT 597
Query 582 CAAGGTTCTTGATTTGGAAAAGTGCAACAACGATTTGGATGGGATCCGGAGAGAGGTGCA 641
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 CAAGGTTCTTGATCTGGAAAAGTGCAACAACGATCTGGATGGGATCCGGAGAGAGGTGCA 657
Query 642 AACAATGAGTCTGATCAACCATCCAAATGTGTTGCAAGCTCATTGCTCATTTACCGCCGG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 AACAATGAGTCTGATCAACCATCCAAATGTGTTGCAAGCTCATTGCTCATTTACCACCGG 717
Query 702 ACACCAGCTTTGGGTTGTGATGCCTTACATGGCTGGAGGATCCTGTCTCCATATAATAAA 761
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 718 ACACCAGCTTTGGGTTGTGATGCCTTACATGGCTGGAGGATCTTGTCTCCATATAATTAA 777
Query 762 GTCTTCATATCCAGATGGATTCGAGGAACCTGTTATCGCTACTTTACTTCGTGAGACTCT 821
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTCTTCCTATCCAGATGGATTTGAGGAACCTGTTATCGCTACTTTACTTCGTGAGACTCT 837
Query 822 GAAAGCTCTTGTATATCTTCATGCTCATGGGCATATCCACAGGGATGTAAAGGCTGGAAA 881
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 838 GAAAGCTCTTGTATATCTTCATGCTCATGGGCATATCCACAGGGATGTGAAGGCTGGAAA 897
Query 882 CATTTTATTGGATTCCAATGGTGCCGTTAAGTTGGCAGACTTTGGAGTATCAGCTTGCAT 941
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 CATTTTATTGGATTCCAATGGTGCCGTTAAGTTAGCAGACTTTGGAGTATCAGCTTGCAT 957
Query 942 GTTTGATACGGGAGATAGACAACGTTCCAGAAATACATTCGTTGGGACTCCATGCTGGAT 1001
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 GTTTGATACGGGAGATAGACAACGTTCCAGAAATACATTTGTTGGGACTCCATGCTGGAT 1017
Query 1002 GGCTCCTGAAGTCATGCAGCAACTACATGGTTATGATTTCAAAGCAGATGTATGGTCATT 1061
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1018 GGCTCCTGAAGTCATGCAGCAACTACATGGATATGATTTCAAAGCAGATGTATGGTCATT 1077
Query 1062 TGGAATAACAGCACTTGAACTGGCACATGGTCATGCCCCATTTTCTAAATATCCGCCAAT 1121
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1078 TGGAATAACAGCACTTGAATTGGCACATGGTCATGCCCCATTTTCCAAATATCCGCCAAT 1137
Query 1122 GAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGACTTGACTACGAGAGAGACAA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAAGGTTTTGCTGATGACCTTACAAAATGCACCTCCTGGACTTGACTACGAGAGAGACAA 1197
Query 1182 AAGATTCTCGAAAGCCTTCAAGGAAATGGTGGGTACATGCCTGGTGAAGGACCCAAAGAA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGATTCTCGAAAGCCTTCAAGGAAATGGTGGGTACATGCCTGGTGAAGGACCCAAAGAA 1257
Query 1242 GCGTCCAACTTCAGAAAAGCTTTT-AAAGCACCCTTTCTTCAAACATGCACGTCCAGCTG 1300
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1258 GCGTCCAACTTCAGAAAAGCTTTTGAAA-CACCCTTTCTTCAAACATGCACGTCCAGCTG 1316
Query 1301 ATTACCTGGTTAAAACAATTCTAAATGGTCTTCCTCCATTAG 1342
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATTACCTGGTTAAAACAATTCTAAATGGTCTTCCTCCATTAG 1358
Score = 1755 bits (950), Expect = 0.0
Identities = 1032/1073 (96%), Gaps = 0/1073 (0%)
Strand=Plus/Plus
Query 1362 GCAAGAATACATAAGGGGAATAAGCGCTTGGAATTTCAATCTCGAGGACCTAAAAACTCA 1421
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCAAGAGTATATAAGGGGAATAAGCGCTTGGAATTTCAATCTCGAGGACCTAAAAACTCA 1500
Query 1422 AGCTGCCCTTATTTCAGATGATGATACTTCACATGCTGAAGAGCCCGATTTCAACCAAAA 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AGCTGCCCTTATTTCAGATGATGATACTTCACATGCTGAAGAGCCCGATTTCAACCAAAA 1560
Query 1482 GCAATGTGAAAGACAGGATGAATCTGCTCTTTCCCCTGAAAGGGCTAGCAGCTCAGCAAC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GCAATGTGAAAGACAGGATGAATCTGCTCTTTCCCCTGAAAGGGCTAGCAGCTCAGCAAC 1620
Query 1542 AGCTCCTAGTCAAGATGACGAACTGAACGATATTCATGATTTAGAGAGTTCTTTCGCCTC 1601
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1621 AGCTCCTAGTCAAGATGACGAACTGAATGATATTCATGATTTAGAGAGTTCTTTCGCCTC 1680
Query 1602 ATTTCCAATCAAACCTCTTCAAGCACTCAAAGGCTGCTTTGATATCAGTGAGGACGAGGA 1661
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1681 ATTTCCAATCAAACCTCTTCAAGCACTAAAAGGCTGCTTTGATATCAGTGAGGACGAGGA 1740
Query 1662 TAATGCAACTACTCCTGATTGGAAAGATGCAAATTTAAATTCTGGACAACAGCATTTAAC 1721
|||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||
Sbjct 1741 TAATGCAACTACTCCTGATTGGAAAGATGCTAATGTAAATTCTGGACAACAGCTTTTAAC 1800
Query 1722 AAAGGCTTCCATTGGATCTCTGGCTGATACCACGAAAGAAGAAGACACTGCAGCACAAAA 1781
||||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 1801 AAAGGCTTCCATTGGATCTTTGGCCGAAACCACGAAAGAAGAGGACACTGCAGCACAAAA 1860
Query 1782 CACTTCTTTACCACGTCATGTCATTTCCGAACAGAAAAAATATTTGAGCGGTTCAATTAT 1841
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1861 CACTTCTTTACCACGTCATGTCATTTCTGAACAGAAAAAATATTTGAGCGGTTCAATTAT 1920
Query 1842 ACCAGAGAGTACTTTCTCTCCAAAAAGAATCACATCTGAGGCTGACAGGGAGTTTCAACA 1901
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1921 ACCAGAGAGTACTTTCTCTCCAAAAAGAATCACATCTGATGCTGATAGGGAGTTTCAACA 1980
Query 1902 GCGTAGATATCAAACAGAGCGGAGCTACAGCGGATCATTGTATCGCACAAAAAGGGATTC 1961
||||||||||||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 1981 GCGTAGATATCAAACAGAGCGGAGCTACAGCGGATCATTATACCGCACCAAGAGAGATTC 2040
Query 1962 TGTGGACGAGACGTCAGAAGTCCCGCATGTGGAGCACAAGGGACGGTTTAAGGTTACATC 2021
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2041 CGTGGACGAGACGTCAGAAGTCCCGCATGTGGAGCACAAGGGACGGTTTAAGGTCACATC 2100
Query 2022 AGCAGATCTAAGTCCCAAGGGATCTACAAACTCTACATTCACACCATTTAGTGGTGGTTC 2081
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2101 AGCAGATCTGAGTCCCAAGGGATCTACAAACTCTACATTCACACCATTTAGTGGTGGTAC 2160
Query 2082 AAGCAGCCCGAGTTCCCTCAATGCGACAACCGCCTCAATCCTTCCATCAATTCAGTCGAT 2141
||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2161 AAGCAGCCCTAGTTGCCTCAATGCTACAACCGCCTCAATCCTCCCATCAATTCAGTCGAT 2220
Query 2142 TTTGCAGCAAAACGCCATGCAACGGGAAGAGATTTTGAGACTAATCAAATACGTGGAGCA 2201
|||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2221 TTTGCAGCAAAATGCTATGCAACGGGAAGAGATTTTGAGACTAATCAAATACTTGGAGCA 2280
Query 2202 AACCTCTGCCAAGCAACCTGGATCCCCCGAGACAAATGTCGATGAGCTACTGCAGACACC 2261
|||||||||||||||||||||||| || ||||| || |||||||| ||| ||||||| ||
Sbjct 2281 AACCTCTGCCAAGCAACCTGGATCGCCTGAGACGAACGTCGATGACCTATTGCAGACGCC 2340
Query 2262 TCCTGCAACGTCACGAGAGAGAGAACTTCAGTCCCAAGTGATGCTACTACAACAAAGCTT 2321
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2341 TCCTGCAACCTCACGAGAGAGAGAACTTCAGTCTCAAGTCATGCTACTACAACAAAGCTT 2400
Query 2322 TTCGAGCCTAACAGAAGAACTAAAGAAACAGAAGCAGAAAAATGGGCAGTTGGAGAATCA 2381
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 TTCCAGCCTAACAGAAGAACTAAAGAAACAGAAGCAGAAAAATGGGCAGTTGGAGAATCA 2460
Query 2382 GTTGAACGCATTAACACACAGAAATGATTGAGTCTCAAAAGCCATCGAGACAA 2434
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 GTTGAACGCATTAACACACAGAAATGATTGAGTCTCAAAAGCCATCGAGACAA 2513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130233384028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5