BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488319 Length=1407 Score E Sequences producing significant alignments: (Bits) Value AT5G14740.1 | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase... 1875 0.0 AT3G01500.2 | Symbols: CA1 | carbonic anhydrase 1 | chr3:194724... 778 0.0 > AT5G14740.1 | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase 2 | chr5:4757972-4762615 FORWARD LENGTH=1514 Length=1514 Score = 1875 bits (1015), Expect = 0.0 Identities = 1222/1315 (93%), Gaps = 41/1315 (3%) Strand=Plus/Plus Query 101 TAATCTGTACAAAGATGTTGTGCTCTCATATACAGTTCAATTTTTTGTAAACAAGCTCAA 160 |||||||||||||||||||||| ||||||| | | ||||| ||||||||| |||||| | Sbjct 207 TAATCTGTACAAAGATGTTGTGTTCTCATAAAAAATTCAA--TTTTGTAAAGAAGCTCTA 264 Query 161 CATGTT-CTGTGCTCTGTAAACTTGGTCCCCTTTTGGGCTACATTTTCTCGAAATGGCTC 219 |||||| || |||||||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 265 CATGTTCCT-TGCTCTGTAAACATGGTCCCCTTTTGGACTACAGTTTCTCGAAATGGCTC 323 Query 220 ATCAGACTCAGAGACGACTCTCTC-ATCTGCTTCAGAAGCCACAAAACAGTATAAATATC 278 |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| Sbjct 324 ATCAGACTCAGAGACGACTCTC-CAATCTGCTTCAAAAGCCACAAAACAGTATAAATATC 382 Query 279 CTTCTCTTCGTCCATTATCTCATCGCCTGTCTCTCCTCTTCCTCTTCTCGTTCCGTTTAT 338 ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 383 CTTCTCTTCGTCC---CTCTCATCGCCTGTCTCTCCTCTTCCTCTTCCCGTTCCATTTAT 439 Query 339 CCGCAAACGGAGCTTGTGTTCGTTGCACCTGCTTCAGTCATCACTTCAATTTTGGTA-TA 397 ||||||||||||||||| |||| |||||||||||||| | |||||||| || | | | Sbjct 440 CCGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAG-C--CACTTCAAACTT-GAACT- 494 Query 398 GAAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 457 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 G-AGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 553 Query 458 TTGAGAAGGATGAGCTGAAGGATGTAGCTGCGGCCAAAGTGAAAAAGATCACCGCGGAGC 517 ||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 554 TTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGC 613 Query 518 TTCAGACAGTCTCGTCGTCCGACAACAAGTCTTTCGATCCCGTCGAACGAATTAAGGAAG 577 ||||| ||| |||||| || |||| ||| ||||| ||||||||||||||||||||||||| Sbjct 614 TTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCCGTCGAACGAATTAAGGAAG 673 Query 578 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAGCTCG 637 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 674 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCTCG 733 Query 638 CTAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTGCCCAT 697 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 734 CCAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCAT 793 Query 698 CACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 757 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 CACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 853 Query 758 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGCTGTCT 817 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 854 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCT 913 Query 818 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 877 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 914 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 973 Query 878 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGATTTCATAGAGGATTGGGTGA 937 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 974 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGACTTCATAGAGGATTGGGTCA 1033 Query 938 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAGG 997 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1034 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAAG 1093 Query 998 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTATTGACAT 1057 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1094 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATTGACAT 1153 Query 1058 ATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1117 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1154 ATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1213 Query 1118 ATTTTGTTAATGGCTCCTTTGAGCTTTGGGAACTCCAGTTTGGAATTTCACCCGTTCATT 1177 | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1214 ACTTTGTTAATGGCTCCTTTGAGCTTTGGGAGCTCCAGTTTGGAATTTCCCCCGTTCATT 1273 Query 1178 CTATATGAACTAACACATCACCATCACCGTCGCCACCACCACCACCGTGatcatcacaag 1237 |||||||||||||||||||||||||||| |||| |||||||||| | || || || Sbjct 1274 CTATATGAACTAACACATCACCATCACCATCGCTACCACCACCA---T---CA-CA-AA- 1324 Query 1238 catcatgcatcatcgtcgtcatcatcatgatcaccatcatcatatatatatatataATGT 1297 |||||| |||| ||||||||||||||||||| |||| ||||||||| | || || Sbjct 1325 CATCAT-CATC---GTCGTCATCATCATGATCAGCATCTTCATATATA-A-AT-----GT 1373 Query 1298 TTTACTCTTATTTAATTGCTGTTTGTAATGG-A--CATTTACTTGCGATGAGCTTCTTTT 1354 |||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| Sbjct 1374 TTTACTCTTATTTAATTGCTACTTGTAATGGTATACATTTACTTGCGATGAGCTTCTTTT 1433 Query 1355 CCTTCATTATCCACTTATAAAATAAATAAA-AA-TCATCTTTATTTTCACAGATA 1407 ||||||||||||| |||||||||||||||| || |||| |||| ||||||||||| Sbjct 1434 CCTTCATTATCCAGTTATAAAATAAATAAATAAATCATGTTTACTTTCACAGATA 1488 > AT3G01500.2 | Symbols: CA1 | carbonic anhydrase 1 | chr3:194724-198019 REVERSE LENGTH=1319 Length=1319 Score = 778 bits (421), Expect = 0.0 Identities = 651/761 (86%), Gaps = 19/761 (2%) Strand=Plus/Plus Query 401 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 459 |||| |||||||| |||| |||| || || || || ||||||||||||||||||||||| Sbjct 372 GAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 431 Query 460 GAGAAGGATGAGCTGAAGGA-TGTAGCTGCGGCCAAA-GTGAAAAAGATCACCGCGGAGC 517 |||||||| ||||| || || || || |||| |||| ||| | ||||||| |||| | Sbjct 432 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGG-CAAAGGTGGAGCAGATCACAGCGGCTC 489 Query 518 TTCAGACA-GTCTCGTCGTCCGACAA-CAAGTCTTTCGATCCCGTCG-AACGAATTAAGG 574 |||||||| || | || |||||||| ||| ||||||| ||||||| ||| |||||| Sbjct 490 TTCAGACAGGT-ACTTCATCCGACAAGAAAG-CTTTCGACCCCGTCGAAAC-CATTAAGC 546 Query 575 AAGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAGC 634 | |||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 547 AGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAGC 606 Query 635 TCGCTAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTGC 693 |||| ||| |||||||| || ||||||||||||||||||||||| ||||| || ||||| Sbjct 607 TCGC-AAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCACGTGTGTGT 665 Query 694 CCATCACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAAT 753 |||||||| || || |||| || || ||||||||||||||||| ||||| || ||||| Sbjct 666 CCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAAC 725 Query 754 ATGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGCT 813 |||||||||||||| |||||||||||||| | || |||||||| ||||||||||| || Sbjct 726 ATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGCG 785 Query 814 GTCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATC 873 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 786 GTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGATC 845 Query 874 AAGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGATTTCATAGAGGATTG 932 || ||||||||||| ||||| ||| || ||||||||||| ||||| ||||||||||| || Sbjct 846 AAAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACTG 904 Query 933 GGTGAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCAT 991 ||| ||||||||||||||||| |||||||| ||| | ||||| | || | |||||| | Sbjct 905 GGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCCT 963 Query 992 TTGAGGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTAT 1051 |||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 964 TTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAAACCTAT 1023 Query 1052 TGACATATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGCT 1111 |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 1024 TGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGCT 1083 Query 1112 ACTATGATTTTGTTAATGGCTCCTTT-GAGCTTTGGGAACT 1151 ||||||| || || || || | |||| |||||||||| ||| Sbjct 1084 ACTATGACTTCGTCAAGGG-TGCTTTTGAGCTTTGGGGACT 1123 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69326952645 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5