BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488323
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14760.1 | Symbols: AO | L-aspartate oxidase | chr5:4768468-... 3241 0.0
> AT5G14760.1 | Symbols: AO | L-aspartate oxidase | chr5:4768468-4772153
FORWARD LENGTH=2389
Length=2389
Score = 3241 bits (1755), Expect = 0.0
Identities = 1923/2004 (96%), Gaps = 12/2004 (1%)
Strand=Plus/Plus
Query 333 CAAATCCATTCAAAGAGCCCTCTTGGTCAAGTGGCGTATTTAAGGCTCTAAAAGCTGAGA 392
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 396 CAAATCCATTCAAAGAGCCCTCTTGGTCAAGTGGGGTATTTAAGGCTCTAAAAGCTGAGA 455
Query 393 GATGTGGTTGTTACTCTCGTGGTGTTTCTGCCATCACCGAGAGCTCAAAACCTTGTACAA 452
||||||||||||||||||||||| |||| |||||| |||| ||||||| | |
Sbjct 456 GATGTGGTTGTTACTCTCGTGGTATTTCCCCCATCAGTGAGACCTCAAAA-C-----C-- 507
Query 453 GTATCAGGGCTGTTTCGGTATCCTCTTCAACAAAGTATTATGATTTCACTGTGATTGGCA 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 508 -TATCAGGGCTGTTTCGGTATCTTCTTCAACAAAGTATTATGATTTCACTGTGATTGGTA 566
Query 513 GTGGAGTTGCGGGTCTGCGTTATGCTTTAGAAGTTGCAAAGCAAGGAACAGTGGCTGTGA 572
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 567 GTGGAGTAGCGGGTCTGCGTTATGCTTTAGAAGTTGCAAAGCAAGGAACAGTCGCAGTGA 626
Query 573 TTACCAAAGATGAGCCTCATGAGAGTAACACAAACTATGCTCAAGGTGGTGTTAGTGCAG 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 627 TTACCAAAGATGAGCCTCATGAGAGTAACACAAACTATGCTCAAGGTGGTGTTAGTGCTG 686
Query 633 TGTTATGCCCTTTGGATTCTGTTGAAAGTCATATGCAGGACACAATGGTTGCCGGTGCTC 692
|||||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||
Sbjct 687 TGTTATGCCCTTTGGATTCTGTTGAAAGTCATATGCGGGACACTATGGTCGCTGGTGCTC 746
Query 693 ATCTTTGTGATGAAGAAACCGTAAGAGTTGTGTGTACTGAAGGGCCTGAAAGGATTCGTG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 ATCTTTGTGATGAAGAAACCGTAAGAGTTGTGTGTACTGAAGGGCCTGAAAGGATTCGTG 806
Query 753 AACTGATTGCGATGGGAGCATCTTTTGATCACGGCGAGGATGGAAATTTGCATTTGGCAA 812
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 807 AACTGATTGCAATGGGAGCATCATTTGATCACGGCGAGGATGGAAATTTGCATTTGGCCA 866
Query 813 GAGAGGGTGGTCATTCGCATCGTAGGATCGTTCACGCAGCTGATATGACAGGAAGAGAGA 872
||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 867 GAGAGGGTGGTCACTCGCATTGTAGGATCGTTCACGCTGCTGATATGACAGGAAGAGAGA 926
Query 873 TTGAGAGAGCTTTGCTTGAAGCTGTACTTAATGATCCCAACATATCTGTCTTCAAACACC 932
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TTGAGAGAGCTTTACTTGAAGCTGTACTTAATGATCCCAACATATCTGTCTTCAAACACC 986
Query 933 ATTTCGCAATCGATCTGCTCACTTCTCAGGTTGGTTTGAACACAGTTTGTCATGGTGTTG 992
|||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 987 ATTTTGCAATCGATCTGCTCACTTCTCAGGATGGCTTGAACACAGTTTGTCATGGTGTGG 1046
Query 993 ACACTTTGAATATCAAAACAAATGAGGTAGTACGCTTTATATCGAAGGTGACATTGCTTG 1052
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 ACACTTTGAATATCAAAACTAATGAGGTAGTACGCTTTATATCGAAGGTGACATTGCTTG 1106
Query 1053 CTTCAGGTGGAGCTGGGCATATCTATCCATCAACCACAAATCCTCTGGTCGCTACTGGAG 1112
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1107 CTTCAGGTGGAGCTGGGCATATCTATCCATCAACCACAAATCCTCTGGTGGCTACTGGAG 1166
Query 1113 ATGGGATGGCTATGGCTCATCGAGCTCAAGCTGTGATCTCAAATATGGAATTTGTGCAGT 1172
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 ATGGGATGGCGATGGCTCATCGAGCTCAAGCTGTGATCTCAAATATGGAATTTGTGCAGT 1226
Query 1173 TTCATCCTACTGCCCTAGCTGACGAAGGTCTTCCCATCAAACCACAAACCGCTAGAGAAA 1232
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||||
Sbjct 1227 TTCATCCTACTGCCCTAGCCGACGAAGGTCTTCCCATCAAACTACAAACTGCTAGGGAAA 1286
Query 1233 ACGCGTTCCTCATCACCGAGGCCGTGAGAGGTGATGGTGGCATCCTCTACAATCTAGGAA 1292
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1287 ACGCGTTCCTCATCACCGAGGCGGTGAGAGGTGATGGTGGCATCCTCTATAATCTAGGAA 1346
Query 1293 TGGAGCGATTCATGCCCGTTTACGATGAACGAGCTGAGCTTGCTCCTAGAGACGTGGTTG 1352
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1347 TGGAGCGATTCATGCCTGTTTACGATGAACGAGCTGAGCTTGCTCCAAGAGACGTGGTTG 1406
Query 1353 CAAGAAGCATTGATGACCAGCTTAAGAAACGGAACGAAAAGTATGTGTTACTTGACATAA 1412
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1407 CAAGAAGTATTGATGACCAGCTTAAGAAACGAAACGAAAAGTATGTGTTACTTGACATAA 1466
Query 1413 GCCATAAGCCAAGAGAAAAGATTCTTGCCCATTTCCCGAACATAGCTTCTGAATGTCTTA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 GCCATAAGCCAAGAGAAAAGATTCTTGCCCATTTCCCGAACATAGCTTCTGAATGTCTTA 1526
Query 1473 AACACGGTCTGGATATCACCCGTCAGCCTATTCCGGTTGTCCCTGCAGCCCATTACATGT 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 AACACGGTCTGGATATCACCCGTCAGCCTATTCCGGTTGTCCCTGCAGCCCATTACATGT 1586
Query 1533 GTGGAGGAGTTCGTGCTGGTTTACAAGGCGAAACCAATGTCCTTGGATTGTTTGTAGCAG 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 GTGGAGGAGTTCGTGCTGGTTTACAAGGCGAAACCAATGTCCTTGGATTGTTTGTAGCAG 1646
Query 1593 GTGAGGTAGCGTGTACCGGCCTCCACGGGGCAAATCGTCTTGCTAGTAACTCACTTTTAG 1652
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1647 GTGAAGTAGCATGTACAGGCCTCCACGGGGCAAATCGTCTTGCTAGTAACTCGCTTTTAG 1706
Query 1653 AAGCTCTGGTTTTCGCAAGACGGGCTGTTCAGCCTTCGACTGAGCTCATGAAACGCACAA 1712
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 AAGCTCTGGTTTTCGCGAGACGGGCTGTTCAGCCTTCGACTGAGCTCATGAAACGCACAA 1766
Query 1713 GACTTGATGTCA-GCGCATCAGAGAAATGGACAAGGCCTGTTGTTGCAACAGCTAGATTG 1771
|||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1767 GACTTGATGT-ATGCGCATCAGAGAAATGGACAAGGCCTGTTGTTGCGACAGCTAGATTG 1825
Query 1772 TTAGGAGATGAAGTAATATCAAAGATTATAGCTTTGACTAAAGAAGTGAGAAGAGAGCTT 1831
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 CTAGGAGATGAAGTAATAGCAAAGATTATAGCTTTGACTAAAGAAGTGAGAAGAGAGCTT 1885
Query 1832 CAGGAAGTGATGTGGAAGTATGTTGGTATTGTCAGATCGACCATTCGGCTCACCACTGCC 1891
||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1886 CAGGAGGTAATGTGGAAGTATGTTGGTATTGTCAGATCGACAATTCGGCTCACCACTGCT 1945
Query 1892 GAGAGGAAAATCGCAGAGCTAGAAGCAAAATGGGAAACATTTTTGTTTGAACATGGATGG 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1946 GAGAGGAAAATCGCAGAGCTAGAAGCAAAATGGGAAACATTTTTGTTTGAACATGGATGG 2005
Query 1952 GAACAAACAGTGGTAGCTCTTGAAGCTTGTGAGATGAGAAACTTGTTCTGTTGCGCTAAG 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006 GAACAAACAGTGGTAGCTCTTGAAGCTTGTGAGATGAGAAACTTGTTCTGTTGCGCTAAG 2065
Query 2012 CTTGTGGTGAGCAGCGCGTTAGCTAGACATGAAAGCCGAGGTCTTCATTATATGACAGAC 2071
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2066 CTTGTGGTGAGCAGCGCGTTAGCTAGACATGAAAGCAGAGGTCTTCATTACATGACAGAC 2125
Query 2072 TTTCCTTTTGTTGAAGAAAGCAAGCGGATTCCTACAATTATTCTCCCCTCTTCTCCTACA 2131
||||||||||| |||||||||||||||||||| || |||||||| || ||||||||||||
Sbjct 2126 TTTCCTTTTGTGGAAGAAAGCAAGCGGATTCCGACGATTATTCTACCGTCTTCTCCTACA 2185
Query 2132 ACAGCTAGTTGGAGCTCAAGGCGGTTACAGAATATAAGCAGCAGCTCACTTATTGATTGT 2191
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2186 ACAGCTAGTTGGAGCTCAAGGCGGTTACAGAATATAAGTAGCAGCTCACTTATTGATTGC 2245
Query 2192 TAAAACTGCAGGAGTTTT-GTTCTTATTTGAATCCAATCCTCTCTTATTATTGTATCAAT 2250
|||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2246 TAAAACTGCAGGAGTTTTTGTTCTTATTTGAATCCAAACCTCTCTGATTATTGTATCAAT 2305
Query 2251 TTGAAAAATTTTGGAACTCAAAAGAAATCTCTGATTCTGACAATCTGTAATACAAAAGAA 2310
|||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 2306 TTGAAAAAATTTGGATCTCAAAAGGAATCTCTGATTCTGACACTCTGTAATACAAAAGGA 2365
Query 2311 AATAAATTATTCATTTGAGATATC 2334
||||||||||||||||||||||||
Sbjct 2366 AATAAATTATTCATTTGAGATATC 2389
Score = 152 bits (82), Expect = 1e-35
Identities = 286/374 (76%), Gaps = 55/374 (15%)
Strand=Plus/Plus
Query 1 ACACCACTTGGGGGCGGCTCATACACAAACACAAAAGGAAGGCGCGAATTTCAAGGACGC 60
|||||||||||||| ||||| | || |||||||| ||||||||||||||||||||| |
Sbjct 5 ACACCACTTGGGGGAGGCTC---C-CATACACAAAACGAAGGCGCGAATTTCAAGGACTC 60
Query 61 TTCTCGACGACCAAACCAGA-AAAA-A----T---A-AA-CACTCTT-TC--C--TC--T 102
|||||||||||||||||| | |||| | | | || | || || | || |
Sbjct 61 TTCTCGACGACCAAACCACATAAAACACTCTTACCAGAATTTGTGTTGTCTTCGTTCATT 120
Query 103 T-CTT-TCGTTTTC-TGTT-GTATT--TCGTAATTTTGATTCTTTCTTTGCGAAAAATC- 155
| ||| || | ||| | || | || |||||||||||||| |||||||||||||| ||
Sbjct 121 TCCTTCTCCTCTTCTTCTTCTTCTTCGTCGTAATTTTGATTGTTTCTTTGCGAAAAGTCG 180
Query 156 TTCTTCTTCT-AT-AAGTCTGAATCACGTTCTATTGATCTATCGACACTCGCGT---TTC 210
|| || || | || |||||||||||||||| |||||||| | |||||||||| |||
Sbjct 181 TT-TT-TT-TAATCAAGTCTGAATCACGTTTTATTGATC--T--ACACTCGCGTGGGTTC 233
Query 211 T-CGTTTCGTGCTTAGATCAGAGCGCTTCCTCTCATGttttttttG-TAGGAGCT-ATAT 267
| ||||||||||||||||||||| ||| |||| | || || | | || | |
Sbjct 234 TCCGTTTCGTGCTTAGATCAGAGAGCTCCCTCCCGTG-ATTCCGAGCTTTAAGGTCGGA- 291
Query 268 AATGGCGGCTCATGTTTCTGCTGG--------A-AATTTCTATCTTGCGGGGCAGGTTTA 318
||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 292 AATGGCGGCTCATGTTTCTACTGGAAACATTCATAATTTCTATCTTGCGGGGCAGGTTTA 351
Query 319 CAGGGGACAAGCTT 332
||||||||||||||
Sbjct 352 CAGGGGACAAGCTT 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115862857860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5